Wall clock time and date at job start Tue Mar 31 2020 22:15:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.69768 * 2 1 4 4 C 1.53191 * 109.58641 * 239.64935 * 2 1 3 5 5 C 1.53046 * 109.33879 * 185.59220 * 4 2 1 6 6 H 1.09001 * 109.45719 * 301.33033 * 5 4 2 7 7 N 1.46494 * 109.46030 * 181.36720 * 5 4 2 8 8 C 1.34778 * 120.00201 * 154.99838 * 7 5 4 9 9 O 1.21569 * 119.99494 * 0.02562 * 8 7 5 10 10 C 1.47753 * 120.00284 * 179.97438 * 8 7 5 11 11 C 1.40600 * 120.26728 * 0.02562 * 10 8 7 12 12 N 1.30808 * 121.53687 * 180.02562 * 11 10 8 13 13 C 1.33820 * 121.71841 * 359.97438 * 12 11 10 14 14 C 1.40524 * 120.81936 * 180.02562 * 13 12 11 15 15 C 1.36129 * 119.81670 * 179.97438 * 14 13 12 16 16 C 1.39340 * 121.08771 * 359.97438 * 15 14 13 17 17 C 1.36136 * 120.83304 * 0.03259 * 16 15 14 18 18 C 1.40542 * 119.62240 * 359.96574 * 17 16 15 19 19 C 1.39012 * 120.27119 * 179.72410 * 10 8 7 20 20 C 1.53038 * 109.53632 * 61.34673 * 5 4 2 21 21 C 1.53191 * 109.31291 * 298.63263 * 20 5 4 22 22 N 1.46929 * 108.77642 * 54.64098 * 21 20 5 23 23 C 1.36933 * 120.63495 * 126.42991 * 22 21 20 24 24 H 1.08003 * 120.00098 * 209.00886 * 23 22 21 25 25 C 1.38814 * 120.00092 * 29.00384 * 23 22 21 26 26 N 1.31621 * 119.99524 * 15.02137 * 25 23 22 27 27 Si 1.86791 * 120.00198 * 195.01299 * 25 23 22 28 28 H 1.48501 * 109.47056 * 90.00332 * 27 25 23 29 29 H 1.48497 * 109.47387 * 210.00206 * 27 25 23 30 30 H 1.48494 * 109.47364 * 330.00365 * 27 25 23 31 31 H 1.08998 * 109.46924 * 180.35376 * 1 2 3 32 32 H 1.08998 * 109.47152 * 300.34878 * 1 2 3 33 33 H 1.08996 * 109.47326 * 60.35628 * 1 2 3 34 34 H 1.08998 * 109.49924 * 65.62655 * 4 2 1 35 35 H 1.08999 * 109.49902 * 305.55865 * 4 2 1 36 36 H 0.97005 * 120.00238 * 335.00396 * 7 5 4 37 37 H 1.07994 * 119.23215 * 359.97438 * 11 10 8 38 38 H 1.08005 * 120.09056 * 359.97438 * 14 13 12 39 39 H 1.08004 * 119.45253 * 179.97438 * 15 14 13 40 40 H 1.08001 * 119.58014 * 179.97438 * 16 15 14 41 41 H 1.08003 * 120.18891 * 179.97438 * 17 16 15 42 42 H 1.08007 * 121.01480 * 0.02562 * 19 10 8 43 43 H 1.08999 * 109.49774 * 58.58563 * 20 5 4 44 44 H 1.09001 * 109.49373 * 178.68782 * 20 5 4 45 45 H 1.09000 * 109.58688 * 174.42290 * 21 20 5 46 46 H 1.08991 * 109.59212 * 294.84802 * 21 20 5 47 47 H 0.97005 * 119.99466 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8974 1.0262 0.0000 4 6 2.0436 -0.7293 -1.2455 5 6 3.5676 -0.8485 -1.1706 6 1 4.0066 0.1466 -1.1000 7 7 4.0646 -1.5166 -2.3759 8 6 5.3288 -1.3036 -2.7918 9 8 6.0567 -0.5574 -2.1664 10 6 5.8303 -1.9779 -4.0071 11 6 4.9934 -2.8424 -4.7344 12 7 5.4117 -3.4525 -5.8132 13 6 6.6549 -3.2848 -6.2790 14 6 7.0844 -3.9493 -7.4404 15 6 8.3534 -3.7635 -7.8965 16 6 9.2412 -2.9211 -7.2303 17 6 8.8625 -2.2600 -6.1021 18 6 7.5597 -2.4282 -5.6026 19 6 7.1314 -1.7578 -4.4443 20 6 3.9569 -1.6663 0.0629 21 6 3.4658 -0.9471 1.3232 22 7 2.0233 -0.6992 1.1945 23 6 1.1547 -1.1115 2.1694 24 1 0.1367 -1.3656 1.9134 25 6 1.5826 -1.2030 3.4868 26 7 2.7063 -0.6252 3.8553 27 14 0.5635 -2.1458 4.7365 28 1 0.9966 -3.5661 4.7580 29 1 0.7553 -1.5494 6.0828 30 1 -0.8716 -2.0716 4.3622 31 1 -0.3633 -1.0276 0.0063 32 1 -0.3633 0.5192 0.8868 33 1 -0.3634 0.5083 -0.8931 34 1 1.7661 -0.1667 -2.1368 35 1 1.6026 -1.7250 -1.2918 36 1 3.4838 -2.1123 -2.8748 37 1 3.9818 -3.0073 -4.3939 38 1 6.4094 -4.6057 -7.9696 39 1 8.6774 -4.2775 -8.7894 40 1 10.2427 -2.7917 -7.6135 41 1 9.5593 -1.6099 -5.5938 42 1 7.7943 -1.0953 -3.9074 43 1 3.4979 -2.6532 0.0049 44 1 5.0412 -1.7706 0.1028 45 1 3.6526 -1.5719 2.1967 46 1 3.9915 0.0015 1.4310 47 1 3.0055 -0.6895 4.7758 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000947753553.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:15:38 Heat of formation + Delta-G solvation = 37.925217 kcal Electronic energy + Delta-G solvation = -28485.908267 eV Core-core repulsion = 24633.785057 eV Total energy + Delta-G solvation = -3852.123211 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -41.24981 -39.67880 -37.79455 -37.13367 -34.71025 -33.73859 -32.49084 -31.73080 -30.74418 -30.39962 -29.35828 -26.42889 -25.38107 -24.43325 -24.30689 -22.44583 -22.09893 -21.40804 -20.26510 -19.44518 -18.43465 -18.02776 -17.40387 -16.38116 -16.06284 -15.64213 -15.12108 -15.05746 -14.92854 -14.55260 -14.32463 -14.05223 -13.90860 -13.75233 -13.64137 -13.37807 -13.22482 -12.82157 -12.71134 -12.16159 -12.12554 -11.86060 -11.60857 -11.23485 -11.11788 -10.94210 -10.91879 -10.82081 -10.67112 -10.32840 -10.29018 -10.13382 -10.03598 -9.75244 -9.70024 -9.37682 -9.19052 -8.78321 -8.63370 -8.42104 -6.64743 -5.76437 -3.20640 -0.08999 0.27591 1.53728 2.29068 3.12854 3.17475 3.38428 3.45083 3.46210 3.79722 3.84391 4.20793 4.37651 4.45079 4.48327 4.49410 4.67674 4.75346 4.87226 5.04086 5.24925 5.36132 5.39107 5.42278 5.51795 5.55814 5.57079 5.67231 5.75907 5.91662 5.97986 6.01184 6.10299 6.14664 6.22100 6.30916 6.38578 6.40138 6.41855 6.49804 6.62868 6.78578 6.85571 7.02109 7.09311 7.38565 7.49259 7.59255 7.70723 7.82988 8.25261 8.47430 9.22965 9.86461 10.43150 11.32090 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.024894 B = 0.002145 C = 0.002102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1124.498818 B =13052.508592 C =13315.185219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.171 3.829 3 H 0.027 0.973 4 C -0.135 4.135 5 C 0.151 3.849 6 H 0.084 0.916 7 N -0.716 5.716 8 C 0.559 3.441 9 O -0.533 6.533 10 C -0.188 4.188 11 C 0.163 3.837 12 N -0.477 5.477 13 C 0.140 3.860 14 C -0.098 4.098 15 C -0.093 4.093 16 C -0.122 4.122 17 C -0.085 4.085 18 C -0.113 4.113 19 C 0.010 3.990 20 C -0.147 4.147 21 C 0.174 3.826 22 N -0.588 5.588 23 C -0.250 4.250 24 H 0.071 0.929 25 C 0.001 3.999 26 N -0.903 5.903 27 Si 0.901 3.099 28 H -0.288 1.288 29 H -0.292 1.292 30 H -0.279 1.279 31 H 0.054 0.946 32 H 0.062 0.938 33 H 0.038 0.962 34 H 0.056 0.944 35 H 0.064 0.936 36 H 0.394 0.606 37 H 0.162 0.838 38 H 0.137 0.863 39 H 0.131 0.869 40 H 0.130 0.870 41 H 0.134 0.866 42 H 0.154 0.846 43 H 0.055 0.945 44 H 0.053 0.947 45 H 0.091 0.909 46 H 0.020 0.980 47 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.374 -4.880 -23.270 25.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.064 3.936 3 H 0.045 0.955 4 C -0.175 4.175 5 C 0.048 3.952 6 H 0.102 0.898 7 N -0.366 5.366 8 C 0.345 3.655 9 O -0.411 6.411 10 C -0.193 4.193 11 C -0.011 4.011 12 N -0.184 5.184 13 C 0.019 3.981 14 C -0.117 4.117 15 C -0.113 4.113 16 C -0.140 4.140 17 C -0.104 4.104 18 C -0.115 4.115 19 C -0.016 4.016 20 C -0.187 4.187 21 C 0.048 3.952 22 N -0.311 5.311 23 C -0.380 4.380 24 H 0.088 0.912 25 C -0.197 4.197 26 N -0.547 5.547 27 Si 0.732 3.268 28 H -0.215 1.215 29 H -0.218 1.218 30 H -0.205 1.205 31 H 0.073 0.927 32 H 0.081 0.919 33 H 0.057 0.943 34 H 0.074 0.926 35 H 0.083 0.917 36 H 0.229 0.771 37 H 0.179 0.821 38 H 0.155 0.845 39 H 0.149 0.851 40 H 0.148 0.852 41 H 0.152 0.848 42 H 0.172 0.828 43 H 0.074 0.926 44 H 0.072 0.928 45 H 0.109 0.891 46 H 0.038 0.962 47 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 9.436 -4.904 -23.156 25.481 hybrid contribution -0.155 -0.282 0.945 0.998 sum 9.281 -5.186 -22.211 24.625 Atomic orbital electron populations 1.21791 0.95713 1.01466 1.00322 1.20358 0.93094 0.93586 0.86592 0.95519 1.22397 0.93514 1.01769 0.99793 1.21113 0.94387 0.96804 0.82919 0.89833 1.46266 1.12733 1.48399 1.29218 1.17948 0.82400 0.81490 0.83692 1.90802 1.56217 1.37319 1.56737 1.21094 0.96415 1.02808 0.99025 1.23079 0.99210 0.89630 0.89222 1.67962 1.14887 1.22487 1.13046 1.19027 0.89336 0.94684 0.95095 1.20839 0.96485 0.99612 0.94755 1.20995 0.93227 0.97402 0.99667 1.20957 1.00199 0.97117 0.95707 1.21101 0.94248 0.98852 0.96159 1.18853 0.95948 0.99765 0.96902 1.22002 0.94402 0.93284 0.91936 1.22585 0.99793 0.99628 0.96740 1.20764 0.83195 0.97338 0.93883 1.44179 1.03015 1.64908 1.19007 1.19183 0.94804 1.37762 0.86222 0.91170 1.25106 0.97856 0.99762 0.97010 1.70019 1.23292 1.44486 1.16920 0.86303 0.79813 0.79753 0.80961 1.21543 1.21836 1.20467 0.92732 0.91870 0.94280 0.92582 0.91693 0.77124 0.82053 0.84480 0.85088 0.85236 0.84784 0.82822 0.92584 0.92849 0.89091 0.96155 0.93658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.44 7.95 37.16 0.30 -2.14 16 2 C 0.17 3.41 3.50 -67.59 -0.24 3.17 16 3 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16 4 C -0.13 -2.18 4.84 -26.61 -0.13 -2.31 16 5 C 0.15 2.55 2.42 -67.89 -0.16 2.39 16 6 H 0.08 1.59 7.58 -51.93 -0.39 1.20 16 7 N -0.72 -9.80 5.03 -54.74 -0.28 -10.07 16 8 C 0.56 8.26 7.74 -12.37 -0.10 8.16 16 9 O -0.53 -9.84 16.05 5.31 0.09 -9.76 16 10 C -0.19 -2.29 5.89 -104.83 -0.62 -2.91 16 11 C 0.16 1.76 10.68 -17.10 -0.18 1.58 16 12 N -0.48 -5.58 10.30 -10.67 -0.11 -5.69 16 13 C 0.14 1.54 6.61 -84.79 -0.56 0.98 16 14 C -0.10 -0.84 9.97 -39.48 -0.39 -1.24 16 15 C -0.09 -0.61 9.94 -39.93 -0.40 -1.00 16 16 C -0.12 -0.78 9.96 -39.93 -0.40 -1.18 16 17 C -0.08 -0.67 9.77 -39.47 -0.39 -1.05 16 18 C -0.11 -1.17 5.74 -106.82 -0.61 -1.79 16 19 C 0.01 0.12 9.46 -38.43 -0.36 -0.25 16 20 C -0.15 -2.88 5.65 -26.61 -0.15 -3.03 16 21 C 0.17 4.17 5.29 -3.71 -0.02 4.15 16 22 N -0.59 -14.17 2.99 -164.77 -0.49 -14.66 16 23 C -0.25 -6.58 8.61 -15.06 -0.13 -6.71 16 24 H 0.07 1.79 6.20 -52.48 -0.33 1.47 16 25 C 0.00 0.03 4.96 -17.43 -0.09 -0.05 16 26 N -0.90 -26.04 11.14 55.49 0.62 -25.43 16 27 Si 0.90 21.49 29.58 -169.99 -5.03 16.46 16 28 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 29 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 30 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 31 H 0.05 0.98 7.41 -51.93 -0.38 0.60 16 32 H 0.06 1.24 7.66 -51.93 -0.40 0.84 16 33 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 34 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 36 H 0.39 4.17 6.63 -40.82 -0.27 3.90 16 37 H 0.16 1.31 6.37 -52.49 -0.33 0.98 16 38 H 0.14 0.99 8.06 -52.48 -0.42 0.57 16 39 H 0.13 0.50 8.06 -52.48 -0.42 0.07 16 40 H 0.13 0.50 8.06 -52.49 -0.42 0.08 16 41 H 0.13 0.78 8.06 -52.48 -0.42 0.35 16 42 H 0.15 1.62 7.70 -52.48 -0.40 1.22 16 43 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 44 H 0.05 1.06 8.14 -51.93 -0.42 0.63 16 45 H 0.09 2.44 6.06 -51.93 -0.31 2.12 16 46 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 47 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 LS Contribution 378.50 15.07 5.70 5.70 Total: -1.00 -32.36 378.50 -10.74 -43.09 By element: Atomic # 1 Polarization: 10.20 SS G_CDS: -6.61 Total: 3.58 kcal Atomic # 6 Polarization: 1.40 SS G_CDS: -4.63 Total: -3.23 kcal Atomic # 7 Polarization: -55.60 SS G_CDS: -0.26 Total: -55.86 kcal Atomic # 8 Polarization: -9.84 SS G_CDS: 0.09 Total: -9.76 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.03 Total: 16.46 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -32.36 -10.74 -43.09 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947753553.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.020 kcal (2) G-P(sol) polarization free energy of solvation -32.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.095 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds