Wall clock time and date at job start Tue Mar 31 2020 22:15:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.69768 * 2 1 4 4 C 1.53191 * 109.58641 * 239.64935 * 2 1 3 5 5 C 1.53046 * 109.33879 * 185.59220 * 4 2 1 6 6 H 1.09001 * 109.45719 * 301.33033 * 5 4 2 7 7 N 1.46494 * 109.46030 * 181.36720 * 5 4 2 8 8 C 1.34778 * 120.00201 * 154.99838 * 7 5 4 9 9 O 1.21569 * 119.99494 * 0.02562 * 8 7 5 10 10 C 1.47753 * 120.00284 * 179.97438 * 8 7 5 11 11 C 1.40600 * 120.26728 * 0.02562 * 10 8 7 12 12 N 1.30808 * 121.53687 * 180.02562 * 11 10 8 13 13 C 1.33820 * 121.71841 * 359.97438 * 12 11 10 14 14 C 1.40524 * 120.81936 * 180.02562 * 13 12 11 15 15 C 1.36129 * 119.81670 * 179.97438 * 14 13 12 16 16 C 1.39340 * 121.08771 * 359.97438 * 15 14 13 17 17 C 1.36136 * 120.83304 * 0.03259 * 16 15 14 18 18 C 1.40542 * 119.62240 * 359.96574 * 17 16 15 19 19 C 1.39012 * 120.27119 * 179.72410 * 10 8 7 20 20 C 1.53038 * 109.53632 * 61.34673 * 5 4 2 21 21 C 1.53191 * 109.31291 * 298.63263 * 20 5 4 22 22 N 1.46929 * 108.77642 * 54.64098 * 21 20 5 23 23 C 1.36933 * 120.63495 * 126.42991 * 22 21 20 24 24 H 1.08003 * 120.00098 * 209.00886 * 23 22 21 25 25 C 1.38814 * 120.00092 * 29.00384 * 23 22 21 26 26 N 1.31621 * 119.99524 * 15.02137 * 25 23 22 27 27 Si 1.86791 * 120.00198 * 195.01299 * 25 23 22 28 28 H 1.48501 * 109.47056 * 90.00332 * 27 25 23 29 29 H 1.48497 * 109.47387 * 210.00206 * 27 25 23 30 30 H 1.48494 * 109.47364 * 330.00365 * 27 25 23 31 31 H 1.08998 * 109.46924 * 180.35376 * 1 2 3 32 32 H 1.08998 * 109.47152 * 300.34878 * 1 2 3 33 33 H 1.08996 * 109.47326 * 60.35628 * 1 2 3 34 34 H 1.08998 * 109.49924 * 65.62655 * 4 2 1 35 35 H 1.08999 * 109.49902 * 305.55865 * 4 2 1 36 36 H 0.97005 * 120.00238 * 335.00396 * 7 5 4 37 37 H 1.07994 * 119.23215 * 359.97438 * 11 10 8 38 38 H 1.08005 * 120.09056 * 359.97438 * 14 13 12 39 39 H 1.08004 * 119.45253 * 179.97438 * 15 14 13 40 40 H 1.08001 * 119.58014 * 179.97438 * 16 15 14 41 41 H 1.08003 * 120.18891 * 179.97438 * 17 16 15 42 42 H 1.08007 * 121.01480 * 0.02562 * 19 10 8 43 43 H 1.08999 * 109.49774 * 58.58563 * 20 5 4 44 44 H 1.09001 * 109.49373 * 178.68782 * 20 5 4 45 45 H 1.09000 * 109.58688 * 174.42290 * 21 20 5 46 46 H 1.08991 * 109.59212 * 294.84802 * 21 20 5 47 47 H 0.97005 * 119.99466 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8974 1.0262 0.0000 4 6 2.0436 -0.7293 -1.2455 5 6 3.5676 -0.8485 -1.1706 6 1 4.0066 0.1466 -1.1000 7 7 4.0646 -1.5166 -2.3759 8 6 5.3288 -1.3036 -2.7918 9 8 6.0567 -0.5574 -2.1664 10 6 5.8303 -1.9779 -4.0071 11 6 4.9934 -2.8424 -4.7344 12 7 5.4117 -3.4525 -5.8132 13 6 6.6549 -3.2848 -6.2790 14 6 7.0844 -3.9493 -7.4404 15 6 8.3534 -3.7635 -7.8965 16 6 9.2412 -2.9211 -7.2303 17 6 8.8625 -2.2600 -6.1021 18 6 7.5597 -2.4282 -5.6026 19 6 7.1314 -1.7578 -4.4443 20 6 3.9569 -1.6663 0.0629 21 6 3.4658 -0.9471 1.3232 22 7 2.0233 -0.6992 1.1945 23 6 1.1547 -1.1115 2.1694 24 1 0.1367 -1.3656 1.9134 25 6 1.5826 -1.2030 3.4868 26 7 2.7063 -0.6252 3.8553 27 14 0.5635 -2.1458 4.7365 28 1 0.9966 -3.5661 4.7580 29 1 0.7553 -1.5494 6.0828 30 1 -0.8716 -2.0716 4.3622 31 1 -0.3633 -1.0276 0.0063 32 1 -0.3633 0.5192 0.8868 33 1 -0.3634 0.5083 -0.8931 34 1 1.7661 -0.1667 -2.1368 35 1 1.6026 -1.7250 -1.2918 36 1 3.4838 -2.1123 -2.8748 37 1 3.9818 -3.0073 -4.3939 38 1 6.4094 -4.6057 -7.9696 39 1 8.6774 -4.2775 -8.7894 40 1 10.2427 -2.7917 -7.6135 41 1 9.5593 -1.6099 -5.5938 42 1 7.7943 -1.0953 -3.9074 43 1 3.4979 -2.6532 0.0049 44 1 5.0412 -1.7706 0.1028 45 1 3.6526 -1.5719 2.1967 46 1 3.9915 0.0015 1.4310 47 1 3.0055 -0.6895 4.7758 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000947753553.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:15:37 Heat of formation + Delta-G solvation = 18.184240 kcal Electronic energy + Delta-G solvation = -28486.764300 eV Core-core repulsion = 24633.785057 eV Total energy + Delta-G solvation = -3852.979244 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -42.05721 -40.85229 -39.28202 -37.91912 -36.20116 -34.52740 -34.25423 -33.13503 -31.97590 -31.10326 -30.82835 -27.99924 -26.84937 -25.63595 -25.12066 -23.73237 -23.12314 -22.71376 -21.63836 -21.03866 -19.37910 -18.89781 -18.27615 -18.16214 -17.14166 -16.95124 -16.56186 -16.22394 -15.75028 -15.57391 -15.55725 -15.33371 -15.23003 -14.96768 -14.82867 -14.58612 -14.39903 -14.27664 -14.13234 -13.32440 -12.95459 -12.80228 -12.75309 -12.73046 -12.65045 -12.61183 -12.43877 -12.36566 -12.06868 -11.84467 -11.71188 -11.62846 -11.50800 -11.48586 -11.09764 -10.56459 -10.54382 -10.13729 -9.83608 -9.31831 -8.64144 -7.82323 -5.28757 -0.84749 -0.44372 0.81784 1.48174 1.49087 1.49520 1.57849 2.00915 2.20506 2.53625 3.04182 3.12730 3.33561 3.51309 3.54499 3.61798 3.68807 3.77010 3.85504 3.96731 4.06964 4.20766 4.27198 4.31575 4.40258 4.41827 4.62537 4.67601 4.71561 4.76643 4.77911 4.85151 4.92928 4.97513 5.04006 5.08134 5.10053 5.17257 5.32893 5.39423 5.40449 5.44692 5.47044 5.54762 5.57427 5.72985 5.74634 5.83015 6.44308 6.46994 6.72472 7.12813 7.18430 7.90370 8.42834 9.24927 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.024894 B = 0.002145 C = 0.002102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1124.498818 B =13052.508592 C =13315.185219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.159 3.841 3 H 0.012 0.988 4 C -0.119 4.119 5 C 0.162 3.838 6 H 0.060 0.940 7 N -0.702 5.702 8 C 0.562 3.438 9 O -0.578 6.578 10 C -0.204 4.204 11 C 0.162 3.838 12 N -0.492 5.492 13 C 0.119 3.881 14 C -0.118 4.118 15 C -0.078 4.078 16 C -0.114 4.114 17 C -0.095 4.095 18 C -0.128 4.128 19 C 0.008 3.992 20 C -0.131 4.131 21 C 0.183 3.817 22 N -0.603 5.603 23 C -0.245 4.245 24 H 0.081 0.919 25 C -0.060 4.060 26 N -0.942 5.942 27 Si 0.964 3.036 28 H -0.288 1.288 29 H -0.301 1.301 30 H -0.264 1.264 31 H 0.056 0.944 32 H 0.039 0.961 33 H 0.077 0.923 34 H 0.091 0.909 35 H 0.078 0.922 36 H 0.413 0.587 37 H 0.186 0.814 38 H 0.147 0.853 39 H 0.165 0.835 40 H 0.163 0.837 41 H 0.151 0.849 42 H 0.153 0.847 43 H 0.062 0.938 44 H 0.044 0.956 45 H 0.056 0.944 46 H -0.013 1.013 47 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.031 -6.384 -26.925 29.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.053 3.947 3 H 0.029 0.971 4 C -0.159 4.159 5 C 0.058 3.942 6 H 0.078 0.922 7 N -0.353 5.353 8 C 0.350 3.650 9 O -0.458 6.458 10 C -0.209 4.209 11 C -0.012 4.012 12 N -0.199 5.199 13 C -0.002 4.002 14 C -0.136 4.136 15 C -0.098 4.098 16 C -0.132 4.132 17 C -0.114 4.114 18 C -0.130 4.130 19 C -0.018 4.018 20 C -0.171 4.171 21 C 0.056 3.944 22 N -0.327 5.327 23 C -0.375 4.375 24 H 0.099 0.901 25 C -0.254 4.254 26 N -0.589 5.589 27 Si 0.793 3.207 28 H -0.216 1.216 29 H -0.229 1.229 30 H -0.188 1.188 31 H 0.075 0.925 32 H 0.058 0.942 33 H 0.096 0.904 34 H 0.110 0.890 35 H 0.097 0.903 36 H 0.252 0.748 37 H 0.203 0.797 38 H 0.164 0.836 39 H 0.183 0.817 40 H 0.180 0.820 41 H 0.169 0.831 42 H 0.171 0.829 43 H 0.081 0.919 44 H 0.063 0.937 45 H 0.074 0.926 46 H 0.005 0.995 47 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 9.053 -6.435 -26.878 29.083 hybrid contribution 0.096 0.208 1.913 1.927 sum 9.149 -6.227 -24.965 27.308 Atomic orbital electron populations 1.21710 0.93803 1.01762 1.01152 1.20650 0.94750 0.92920 0.86422 0.97057 1.22208 0.92169 1.02506 0.98971 1.20723 0.95195 0.95276 0.83016 0.92221 1.45931 1.12865 1.48348 1.28110 1.18313 0.82044 0.80683 0.83961 1.90781 1.57362 1.39386 1.58316 1.20855 0.97229 1.04264 0.98594 1.23343 0.99932 0.89026 0.88886 1.68001 1.15570 1.22963 1.13375 1.19455 0.89361 0.95274 0.96069 1.21081 0.97817 1.00240 0.94468 1.21451 0.92126 0.96146 1.00027 1.21405 1.01575 0.95610 0.94601 1.21396 0.93515 0.99531 0.96960 1.19026 0.97193 1.00006 0.96740 1.22142 0.94240 0.93122 0.92311 1.22322 0.99046 0.99673 0.96102 1.20455 0.83663 0.95473 0.94785 1.44438 1.02624 1.65610 1.20014 1.19567 0.95313 1.36054 0.86594 0.90101 1.25882 0.99144 1.01318 0.99072 1.70200 1.25292 1.46667 1.16703 0.85299 0.79134 0.78084 0.78171 1.21551 1.22853 1.18832 0.92538 0.94207 0.90383 0.89028 0.90319 0.74838 0.79722 0.83555 0.81704 0.81960 0.83105 0.82930 0.91878 0.93739 0.92563 0.99456 0.94496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.30 7.95 71.98 0.57 -3.73 16 2 C 0.16 6.21 3.50 44.97 0.16 6.37 16 3 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 4 C -0.12 -3.57 4.84 30.67 0.15 -3.43 16 5 C 0.16 5.43 2.42 45.02 0.11 5.54 16 6 H 0.06 2.33 7.58 -2.39 -0.02 2.31 16 7 N -0.70 -18.37 5.03 -445.36 -2.24 -20.61 16 8 C 0.56 16.63 7.74 86.76 0.67 17.30 16 9 O -0.58 -22.07 16.05 -3.93 -0.06 -22.13 16 10 C -0.20 -4.92 5.89 -20.00 -0.12 -5.03 16 11 C 0.16 3.33 10.68 85.42 0.91 4.24 16 12 N -0.49 -10.98 10.30 -187.68 -1.93 -12.92 16 13 C 0.12 2.47 6.61 40.27 0.27 2.74 16 14 C -0.12 -1.76 9.97 22.34 0.22 -1.54 16 15 C -0.08 -0.74 9.94 22.04 0.22 -0.52 16 16 C -0.11 -1.06 9.96 22.05 0.22 -0.84 16 17 C -0.10 -1.30 9.77 22.34 0.22 -1.08 16 18 C -0.13 -2.54 5.74 -21.29 -0.12 -2.66 16 19 C 0.01 0.19 9.46 23.01 0.22 0.41 16 20 C -0.13 -5.25 5.65 30.67 0.17 -5.08 16 21 C 0.18 9.19 5.29 86.36 0.46 9.65 16 22 N -0.60 -29.59 2.99 -675.21 -2.02 -31.61 16 23 C -0.25 -13.00 8.61 84.03 0.72 -12.28 16 24 H 0.08 4.06 6.20 -2.91 -0.02 4.04 16 25 C -0.06 -3.34 4.96 84.86 0.42 -2.92 16 26 N -0.94 -56.93 11.14 21.65 0.24 -56.69 16 27 Si 0.96 45.02 29.58 68.60 2.03 47.05 16 28 H -0.29 -13.34 7.11 99.48 0.71 -12.63 16 29 H -0.30 -14.42 7.11 99.48 0.71 -13.71 16 30 H -0.26 -11.52 7.11 99.48 0.71 -10.81 16 31 H 0.06 1.89 7.41 -2.39 -0.02 1.87 16 32 H 0.04 1.51 7.66 -2.39 -0.02 1.49 16 33 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 34 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 35 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 36 H 0.41 7.70 6.63 -92.70 -0.61 7.08 16 37 H 0.19 2.60 6.37 -2.91 -0.02 2.59 16 38 H 0.15 1.81 8.06 -2.91 -0.02 1.79 16 39 H 0.17 0.43 8.06 -2.91 -0.02 0.41 16 40 H 0.16 0.46 8.06 -2.91 -0.02 0.44 16 41 H 0.15 1.45 8.06 -2.91 -0.02 1.43 16 42 H 0.15 3.34 7.70 -2.91 -0.02 3.32 16 43 H 0.06 2.43 8.14 -2.39 -0.02 2.41 16 44 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 45 H 0.06 3.20 6.06 -2.39 -0.01 3.19 16 46 H -0.01 -0.70 8.14 -2.39 -0.02 -0.72 16 47 H 0.25 14.54 8.31 -92.70 -0.77 13.77 16 Total: -1.00 -74.72 378.50 1.86 -72.86 By element: Atomic # 1 Polarization: 16.52 SS G_CDS: 0.38 Total: 16.90 kcal Atomic # 6 Polarization: 1.69 SS G_CDS: 5.47 Total: 7.15 kcal Atomic # 7 Polarization: -115.88 SS G_CDS: -5.95 Total: -121.84 kcal Atomic # 8 Polarization: -22.07 SS G_CDS: -0.06 Total: -22.13 kcal Atomic # 14 Polarization: 45.02 SS G_CDS: 2.03 Total: 47.05 kcal Total: -74.72 1.86 -72.86 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947753553.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.046 kcal (2) G-P(sol) polarization free energy of solvation -74.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.862 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds