Wall clock time and date at job start Tue Mar 31 2020 22:16:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.69933 * 2 1 4 4 C 1.53192 * 109.58861 * 239.64491 * 2 1 3 5 5 C 1.53035 * 109.31417 * 185.57439 * 4 2 1 6 6 H 1.09002 * 109.46386 * 301.34728 * 5 4 2 7 7 N 1.46502 * 109.46146 * 181.38304 * 5 4 2 8 8 C 1.34773 * 120.00077 * 154.99975 * 7 5 4 9 9 O 1.21545 * 120.00131 * 0.02562 * 8 7 5 10 10 C 1.47889 * 119.99918 * 180.02562 * 8 7 5 11 11 C 1.40563 * 119.70329 * 359.73086 * 10 8 7 12 12 C 1.35822 * 120.73129 * 179.72896 * 11 10 8 13 13 C 1.40551 * 119.97991 * 0.56406 * 12 11 10 14 14 C 1.40822 * 121.12687 * 179.71740 * 13 12 11 15 15 C 1.36549 * 118.19773 * 179.97438 * 14 13 12 16 16 C 1.39417 * 119.93992 * 0.02562 * 15 14 13 17 17 N 1.31025 * 121.71224 * 359.97331 * 16 15 14 18 18 C 1.33740 * 121.35563 * 0.04593 * 17 16 15 19 19 C 1.38406 * 119.70209 * 180.02562 * 10 8 7 20 20 C 1.53044 * 109.53749 * 61.36532 * 5 4 2 21 21 C 1.53193 * 109.31425 * 298.63778 * 20 5 4 22 22 N 1.46923 * 108.77736 * 54.62991 * 21 20 5 23 23 C 1.36936 * 120.62911 * 126.41715 * 22 21 20 24 24 H 1.08000 * 119.99853 * 209.01480 * 23 22 21 25 25 C 1.38808 * 119.99903 * 29.01379 * 23 22 21 26 26 N 1.31615 * 119.99919 * 15.01900 * 25 23 22 27 27 Si 1.86803 * 119.99890 * 195.01100 * 25 23 22 28 28 H 1.48497 * 109.46802 * 90.00462 * 27 25 23 29 29 H 1.48504 * 109.47224 * 210.00444 * 27 25 23 30 30 H 1.48498 * 109.47058 * 330.00637 * 27 25 23 31 31 H 1.08996 * 109.46833 * 299.64647 * 1 2 3 32 32 H 1.08996 * 109.47004 * 59.64391 * 1 2 3 33 33 H 1.08996 * 109.46731 * 179.64469 * 1 2 3 34 34 H 1.08996 * 109.49621 * 305.53102 * 4 2 1 35 35 H 1.09005 * 109.49498 * 65.59040 * 4 2 1 36 36 H 0.97003 * 119.99853 * 335.00753 * 7 5 4 37 37 H 1.08003 * 119.63800 * 359.97438 * 11 10 8 38 38 H 1.08000 * 120.00966 * 180.23216 * 12 11 10 39 39 H 1.08000 * 120.89735 * 359.97438 * 14 13 12 40 40 H 1.08002 * 120.02999 * 179.97438 * 15 14 13 41 41 H 1.07999 * 119.14619 * 179.97438 * 16 15 14 42 42 H 1.08000 * 120.23795 * 0.02562 * 19 10 8 43 43 H 1.08998 * 109.50107 * 178.67693 * 20 5 4 44 44 H 1.09005 * 109.49337 * 58.58567 * 20 5 4 45 45 H 1.09005 * 109.57989 * 294.84139 * 21 20 5 46 46 H 1.08995 * 109.58946 * 174.42402 * 21 20 5 47 47 H 0.97007 * 119.99487 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8974 1.0263 0.0000 4 6 2.0436 -0.7294 -1.2454 5 6 3.5675 -0.8479 -1.1702 6 1 4.0061 0.1475 -1.0993 7 7 4.0652 -1.5157 -2.3754 8 6 5.3294 -1.3020 -2.7908 9 8 6.0568 -0.5557 -2.1653 10 6 5.8317 -1.9758 -4.0077 11 6 4.9870 -2.8421 -4.7232 12 6 5.4248 -3.4674 -5.8466 13 6 6.7395 -3.2604 -6.2986 14 6 7.2204 -3.9009 -7.4568 15 6 8.5073 -3.6563 -7.8422 16 6 9.3056 -2.7926 -7.0936 17 7 8.8551 -2.1981 -6.0164 18 6 7.6048 -2.3947 -5.5844 19 6 7.1311 -1.7524 -4.4285 20 6 3.9570 -1.6656 0.0635 21 6 3.4650 -0.9469 1.3238 22 7 2.0226 -0.6995 1.1945 23 6 1.1538 -1.1127 2.1690 24 1 0.1360 -1.3672 1.9125 25 6 1.5812 -1.2043 3.4865 26 7 2.7045 -0.6261 3.8556 27 14 0.5621 -2.1482 4.7355 28 1 0.9961 -3.5682 4.7567 29 1 0.7531 -1.5520 6.0821 30 1 -0.8728 -2.0747 4.3605 31 1 -0.3633 0.5083 0.8931 32 1 -0.3633 0.5193 -0.8867 33 1 -0.3633 -1.0276 -0.0064 34 1 1.6030 -1.7252 -1.2913 35 1 1.7655 -0.1671 -2.1369 36 1 3.4849 -2.1115 -2.8744 37 1 3.9773 -3.0092 -4.3780 38 1 4.7647 -4.1277 -6.3893 39 1 6.5885 -4.5675 -8.0248 40 1 8.9067 -4.1322 -8.7256 41 1 10.3218 -2.6086 -7.4098 42 1 7.7768 -1.0896 -3.8715 43 1 5.0412 -1.7695 0.1037 44 1 3.4983 -2.6528 0.0052 45 1 3.9904 0.0021 1.4317 46 1 3.6519 -1.5716 2.1971 47 1 3.0029 -0.6899 4.7764 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000947829309.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:16:23 Heat of formation + Delta-G solvation = 39.249137 kcal Electronic energy + Delta-G solvation = -28476.761644 eV Core-core repulsion = 24624.695843 eV Total energy + Delta-G solvation = -3852.065801 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.21580 -39.79053 -37.83846 -36.87135 -34.67445 -33.82708 -32.47187 -31.69527 -30.73872 -30.34493 -29.37580 -26.42917 -25.47462 -24.44535 -24.20317 -22.56239 -21.99742 -21.37176 -20.26319 -19.47231 -18.45552 -17.80465 -17.20296 -16.46268 -16.14917 -15.74492 -15.09615 -14.99279 -14.82650 -14.43097 -14.35713 -14.10904 -13.92498 -13.78395 -13.61173 -13.43101 -13.27166 -12.81720 -12.71003 -12.17509 -11.98501 -11.90697 -11.59969 -11.22560 -11.09853 -10.94780 -10.90825 -10.87882 -10.66514 -10.30673 -10.14702 -10.04149 -9.93668 -9.85083 -9.73317 -9.37985 -9.17767 -8.75202 -8.61455 -8.40968 -6.63835 -5.75628 -3.19951 -0.06824 0.29466 1.55631 2.22701 3.18128 3.22764 3.38605 3.45048 3.46469 3.81984 3.93839 4.17761 4.32446 4.46719 4.49787 4.54243 4.62125 4.79014 4.83915 5.10172 5.26647 5.37318 5.40323 5.42694 5.50615 5.54771 5.58624 5.68868 5.76873 5.90830 5.97056 5.99840 6.12949 6.15399 6.24249 6.31108 6.37799 6.41532 6.43260 6.50841 6.64389 6.80671 6.88458 7.02988 7.09743 7.40168 7.53072 7.64283 7.72469 7.83448 8.31724 8.48224 9.23672 9.87232 10.44087 11.32865 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.024914 B = 0.002140 C = 0.002096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1123.602038 B =13078.539208 C =13352.916977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.171 3.829 3 H 0.027 0.973 4 C -0.134 4.134 5 C 0.150 3.850 6 H 0.083 0.917 7 N -0.717 5.717 8 C 0.552 3.448 9 O -0.530 6.530 10 C -0.112 4.112 11 C -0.089 4.089 12 C -0.102 4.102 13 C -0.089 4.089 14 C -0.061 4.061 15 C -0.170 4.170 16 C 0.128 3.872 17 N -0.465 5.465 18 C 0.117 3.883 19 C -0.025 4.025 20 C -0.147 4.147 21 C 0.174 3.826 22 N -0.588 5.588 23 C -0.250 4.250 24 H 0.070 0.930 25 C 0.001 3.999 26 N -0.902 5.902 27 Si 0.901 3.099 28 H -0.288 1.288 29 H -0.292 1.292 30 H -0.279 1.279 31 H 0.063 0.937 32 H 0.038 0.962 33 H 0.053 0.947 34 H 0.063 0.937 35 H 0.055 0.945 36 H 0.394 0.606 37 H 0.133 0.867 38 H 0.136 0.864 39 H 0.141 0.859 40 H 0.139 0.861 41 H 0.161 0.839 42 H 0.152 0.848 43 H 0.053 0.947 44 H 0.055 0.945 45 H 0.021 0.979 46 H 0.091 0.909 47 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.572 -7.457 -25.238 27.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.063 3.937 3 H 0.045 0.955 4 C -0.174 4.174 5 C 0.047 3.953 6 H 0.101 0.899 7 N -0.367 5.367 8 C 0.338 3.662 9 O -0.408 6.408 10 C -0.117 4.117 11 C -0.107 4.107 12 C -0.121 4.121 13 C -0.091 4.091 14 C -0.087 4.087 15 C -0.190 4.190 16 C -0.045 4.045 17 N -0.173 5.173 18 C -0.004 4.004 19 C -0.045 4.045 20 C -0.187 4.187 21 C 0.048 3.952 22 N -0.311 5.311 23 C -0.380 4.380 24 H 0.088 0.912 25 C -0.197 4.197 26 N -0.547 5.547 27 Si 0.731 3.269 28 H -0.215 1.215 29 H -0.218 1.218 30 H -0.205 1.205 31 H 0.082 0.918 32 H 0.057 0.943 33 H 0.072 0.928 34 H 0.082 0.918 35 H 0.074 0.926 36 H 0.229 0.771 37 H 0.151 0.849 38 H 0.154 0.846 39 H 0.158 0.842 40 H 0.157 0.843 41 H 0.178 0.822 42 H 0.169 0.831 43 H 0.072 0.928 44 H 0.073 0.927 45 H 0.039 0.961 46 H 0.109 0.891 47 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 7.586 -6.286 -24.004 25.947 hybrid contribution -1.200 -1.474 -0.121 1.905 sum 6.386 -7.761 -24.125 26.135 Atomic orbital electron populations 1.21790 0.95740 1.01364 1.00382 1.20358 0.93072 0.93609 0.86616 0.95502 1.22387 0.93580 1.01669 0.99764 1.21104 0.94310 0.96851 0.83013 0.89857 1.46255 1.12818 1.48440 1.29175 1.18161 0.82379 0.81649 0.84012 1.90805 1.56188 1.37086 1.56674 1.20060 0.94854 0.99780 0.96969 1.21011 0.99668 0.95330 0.94726 1.20868 0.94260 1.00130 0.96802 1.18966 0.95445 0.98295 0.96437 1.21517 0.95906 0.96937 0.94344 1.21968 0.95112 1.00199 1.01729 1.23031 1.00073 0.91550 0.89870 1.68043 1.13440 1.22047 1.13757 1.18782 0.89934 0.96111 0.95525 1.21279 0.94282 0.96013 0.92895 1.22583 0.99831 0.99566 0.96750 1.20766 0.83176 0.97366 0.93888 1.44176 1.03014 1.64884 1.19035 1.19174 0.94811 1.37781 0.86237 0.91198 1.25107 0.97847 0.99758 0.97008 1.70017 1.23309 1.44442 1.16895 0.86309 0.79797 0.79763 0.80986 1.21547 1.21821 1.20480 0.91820 0.94308 0.92797 0.91788 0.92638 0.77139 0.84941 0.84622 0.84166 0.84329 0.82162 0.83071 0.92813 0.92655 0.96135 0.89099 0.93640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.44 7.94 37.16 0.30 -2.15 16 2 C 0.17 3.44 3.50 -67.60 -0.24 3.20 16 3 H 0.03 0.58 8.14 -51.93 -0.42 0.15 16 4 C -0.13 -2.19 4.84 -26.61 -0.13 -2.32 16 5 C 0.15 2.60 2.42 -67.89 -0.16 2.44 16 6 H 0.08 1.63 7.58 -51.93 -0.39 1.24 16 7 N -0.72 -10.08 5.03 -54.70 -0.27 -10.36 16 8 C 0.55 8.53 7.73 -12.31 -0.10 8.43 16 9 O -0.53 -10.34 15.96 5.33 0.08 -10.25 16 10 C -0.11 -1.40 5.87 -105.01 -0.62 -2.01 16 11 C -0.09 -0.83 9.44 -39.57 -0.37 -1.20 16 12 C -0.10 -0.82 9.74 -39.58 -0.39 -1.21 16 13 C -0.09 -0.84 5.75 -106.72 -0.61 -1.46 16 14 C -0.06 -0.41 9.88 -39.21 -0.39 -0.80 16 15 C -0.17 -1.03 10.03 -39.75 -0.40 -1.43 16 16 C 0.13 1.01 11.15 -17.46 -0.19 0.82 16 17 N -0.47 -5.38 10.34 -10.98 -0.11 -5.49 16 18 C 0.12 1.39 6.60 -84.87 -0.56 0.83 16 19 C -0.03 -0.33 9.56 -38.68 -0.37 -0.70 16 20 C -0.15 -2.93 5.65 -26.61 -0.15 -3.08 16 21 C 0.17 4.21 5.29 -3.71 -0.02 4.19 16 22 N -0.59 -14.28 2.99 -164.78 -0.49 -14.77 16 23 C -0.25 -6.61 8.60 -15.06 -0.13 -6.74 16 24 H 0.07 1.79 6.21 -52.49 -0.33 1.47 16 25 C 0.00 0.04 4.96 -17.43 -0.09 -0.05 16 26 N -0.90 -26.18 11.14 55.49 0.62 -25.57 16 27 Si 0.90 21.54 29.58 -169.99 -5.03 16.51 16 28 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 29 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 30 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 31 H 0.06 1.26 7.62 -51.93 -0.40 0.86 16 32 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 33 H 0.05 0.97 7.45 -51.93 -0.39 0.59 16 34 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 35 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.39 4.25 6.58 -40.82 -0.27 3.98 16 37 H 0.13 0.91 6.34 -52.48 -0.33 0.58 16 38 H 0.14 0.67 8.06 -52.49 -0.42 0.25 16 39 H 0.14 0.52 8.06 -52.49 -0.42 0.10 16 40 H 0.14 0.39 8.06 -52.49 -0.42 -0.03 16 41 H 0.16 0.76 8.06 -52.49 -0.42 0.34 16 42 H 0.15 2.12 7.60 -52.49 -0.40 1.72 16 43 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 44 H 0.05 1.09 8.14 -51.93 -0.42 0.66 16 45 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 46 H 0.09 2.46 6.06 -51.93 -0.31 2.15 16 47 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 LS Contribution 378.26 15.07 5.70 5.70 Total: -1.00 -33.26 378.26 -10.72 -43.98 By element: Atomic # 1 Polarization: 10.07 SS G_CDS: -6.60 Total: 3.47 kcal Atomic # 6 Polarization: 1.39 SS G_CDS: -4.61 Total: -3.22 kcal Atomic # 7 Polarization: -55.92 SS G_CDS: -0.26 Total: -56.19 kcal Atomic # 8 Polarization: -10.34 SS G_CDS: 0.08 Total: -10.25 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.03 Total: 16.51 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -33.26 -10.72 -43.98 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947829309.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.231 kcal (2) G-P(sol) polarization free energy of solvation -33.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.982 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds