Wall clock time and date at job start Tue Mar 31 2020 22:16:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.69933 * 2 1 4 4 C 1.53192 * 109.58861 * 239.64491 * 2 1 3 5 5 C 1.53035 * 109.31417 * 185.57439 * 4 2 1 6 6 H 1.09002 * 109.46386 * 301.34728 * 5 4 2 7 7 N 1.46502 * 109.46146 * 181.38304 * 5 4 2 8 8 C 1.34773 * 120.00077 * 154.99975 * 7 5 4 9 9 O 1.21545 * 120.00131 * 0.02562 * 8 7 5 10 10 C 1.47889 * 119.99918 * 180.02562 * 8 7 5 11 11 C 1.40563 * 119.70329 * 359.73086 * 10 8 7 12 12 C 1.35822 * 120.73129 * 179.72896 * 11 10 8 13 13 C 1.40551 * 119.97991 * 0.56406 * 12 11 10 14 14 C 1.40822 * 121.12687 * 179.71740 * 13 12 11 15 15 C 1.36549 * 118.19773 * 179.97438 * 14 13 12 16 16 C 1.39417 * 119.93992 * 0.02562 * 15 14 13 17 17 N 1.31025 * 121.71224 * 359.97331 * 16 15 14 18 18 C 1.33740 * 121.35563 * 0.04593 * 17 16 15 19 19 C 1.38406 * 119.70209 * 180.02562 * 10 8 7 20 20 C 1.53044 * 109.53749 * 61.36532 * 5 4 2 21 21 C 1.53193 * 109.31425 * 298.63778 * 20 5 4 22 22 N 1.46923 * 108.77736 * 54.62991 * 21 20 5 23 23 C 1.36936 * 120.62911 * 126.41715 * 22 21 20 24 24 H 1.08000 * 119.99853 * 209.01480 * 23 22 21 25 25 C 1.38808 * 119.99903 * 29.01379 * 23 22 21 26 26 N 1.31615 * 119.99919 * 15.01900 * 25 23 22 27 27 Si 1.86803 * 119.99890 * 195.01100 * 25 23 22 28 28 H 1.48497 * 109.46802 * 90.00462 * 27 25 23 29 29 H 1.48504 * 109.47224 * 210.00444 * 27 25 23 30 30 H 1.48498 * 109.47058 * 330.00637 * 27 25 23 31 31 H 1.08996 * 109.46833 * 299.64647 * 1 2 3 32 32 H 1.08996 * 109.47004 * 59.64391 * 1 2 3 33 33 H 1.08996 * 109.46731 * 179.64469 * 1 2 3 34 34 H 1.08996 * 109.49621 * 305.53102 * 4 2 1 35 35 H 1.09005 * 109.49498 * 65.59040 * 4 2 1 36 36 H 0.97003 * 119.99853 * 335.00753 * 7 5 4 37 37 H 1.08003 * 119.63800 * 359.97438 * 11 10 8 38 38 H 1.08000 * 120.00966 * 180.23216 * 12 11 10 39 39 H 1.08000 * 120.89735 * 359.97438 * 14 13 12 40 40 H 1.08002 * 120.02999 * 179.97438 * 15 14 13 41 41 H 1.07999 * 119.14619 * 179.97438 * 16 15 14 42 42 H 1.08000 * 120.23795 * 0.02562 * 19 10 8 43 43 H 1.08998 * 109.50107 * 178.67693 * 20 5 4 44 44 H 1.09005 * 109.49337 * 58.58567 * 20 5 4 45 45 H 1.09005 * 109.57989 * 294.84139 * 21 20 5 46 46 H 1.08995 * 109.58946 * 174.42402 * 21 20 5 47 47 H 0.97007 * 119.99487 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8974 1.0263 0.0000 4 6 2.0436 -0.7294 -1.2454 5 6 3.5675 -0.8479 -1.1702 6 1 4.0061 0.1475 -1.0993 7 7 4.0652 -1.5157 -2.3754 8 6 5.3294 -1.3020 -2.7908 9 8 6.0568 -0.5557 -2.1653 10 6 5.8317 -1.9758 -4.0077 11 6 4.9870 -2.8421 -4.7232 12 6 5.4248 -3.4674 -5.8466 13 6 6.7395 -3.2604 -6.2986 14 6 7.2204 -3.9009 -7.4568 15 6 8.5073 -3.6563 -7.8422 16 6 9.3056 -2.7926 -7.0936 17 7 8.8551 -2.1981 -6.0164 18 6 7.6048 -2.3947 -5.5844 19 6 7.1311 -1.7524 -4.4285 20 6 3.9570 -1.6656 0.0635 21 6 3.4650 -0.9469 1.3238 22 7 2.0226 -0.6995 1.1945 23 6 1.1538 -1.1127 2.1690 24 1 0.1360 -1.3672 1.9125 25 6 1.5812 -1.2043 3.4865 26 7 2.7045 -0.6261 3.8556 27 14 0.5621 -2.1482 4.7355 28 1 0.9961 -3.5682 4.7567 29 1 0.7531 -1.5520 6.0821 30 1 -0.8728 -2.0747 4.3605 31 1 -0.3633 0.5083 0.8931 32 1 -0.3633 0.5193 -0.8867 33 1 -0.3633 -1.0276 -0.0064 34 1 1.6030 -1.7252 -1.2913 35 1 1.7655 -0.1671 -2.1369 36 1 3.4849 -2.1115 -2.8744 37 1 3.9773 -3.0092 -4.3780 38 1 4.7647 -4.1277 -6.3893 39 1 6.5885 -4.5675 -8.0248 40 1 8.9067 -4.1322 -8.7256 41 1 10.3218 -2.6086 -7.4098 42 1 7.7768 -1.0896 -3.8715 43 1 5.0412 -1.7695 0.1037 44 1 3.4983 -2.6528 0.0052 45 1 3.9904 0.0021 1.4317 46 1 3.6519 -1.5716 2.1971 47 1 3.0029 -0.6899 4.7764 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000947829309.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:16:22 Heat of formation + Delta-G solvation = 17.801758 kcal Electronic energy + Delta-G solvation = -28477.691672 eV Core-core repulsion = 24624.695843 eV Total energy + Delta-G solvation = -3852.995829 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.96540 -40.98392 -39.35618 -37.74095 -36.21096 -34.47966 -34.26046 -33.13111 -31.95697 -31.04829 -30.89542 -28.01734 -26.88890 -25.76097 -24.87492 -23.80424 -23.19429 -22.60928 -21.67174 -21.06219 -19.52987 -18.54821 -18.23314 -17.91761 -17.21419 -17.09973 -16.71999 -16.16176 -15.75407 -15.57017 -15.49682 -15.31877 -15.17807 -14.92080 -14.86629 -14.60083 -14.49529 -14.31971 -13.91576 -13.32742 -12.96470 -12.96127 -12.77021 -12.73977 -12.66174 -12.61644 -12.50127 -12.37213 -12.06902 -11.84337 -11.71828 -11.56790 -11.51816 -11.39996 -10.98451 -10.55469 -10.49245 -10.14306 -9.81718 -9.34145 -8.65211 -7.82679 -5.29593 -0.78805 -0.36877 0.85985 1.44742 1.48141 1.49263 1.57952 2.00442 2.25389 2.53321 3.08227 3.26321 3.33676 3.51730 3.57791 3.64435 3.82904 3.84321 3.96124 4.04352 4.05515 4.06798 4.26220 4.29476 4.38994 4.57725 4.61548 4.70196 4.72804 4.75325 4.80001 4.86774 4.93852 4.97366 5.06754 5.08836 5.09429 5.15394 5.18364 5.30756 5.38600 5.44197 5.52346 5.54591 5.56976 5.71429 5.73795 5.77741 6.43614 6.49902 6.91145 7.15203 7.17418 7.89390 8.42389 9.24721 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.024914 B = 0.002140 C = 0.002096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1123.602038 B =13078.539208 C =13352.916977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.158 3.842 3 H 0.009 0.991 4 C -0.117 4.117 5 C 0.161 3.839 6 H 0.055 0.945 7 N -0.698 5.698 8 C 0.550 3.450 9 O -0.583 6.583 10 C -0.119 4.119 11 C -0.098 4.098 12 C -0.081 4.081 13 C -0.102 4.102 14 C -0.056 4.056 15 C -0.163 4.163 16 C 0.126 3.874 17 N -0.515 5.515 18 C 0.093 3.907 19 C -0.054 4.054 20 C -0.131 4.131 21 C 0.183 3.817 22 N -0.602 5.602 23 C -0.245 4.245 24 H 0.083 0.917 25 C -0.061 4.061 26 N -0.943 5.943 27 Si 0.966 3.034 28 H -0.288 1.288 29 H -0.302 1.302 30 H -0.262 1.262 31 H 0.039 0.961 32 H 0.078 0.922 33 H 0.057 0.943 34 H 0.081 0.919 35 H 0.092 0.908 36 H 0.416 0.584 37 H 0.162 0.838 38 H 0.181 0.819 39 H 0.182 0.818 40 H 0.180 0.820 41 H 0.186 0.814 42 H 0.119 0.881 43 H 0.040 0.960 44 H 0.065 0.935 45 H -0.015 1.015 46 H 0.056 0.944 47 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.264 -10.545 -29.953 32.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.052 3.948 3 H 0.027 0.973 4 C -0.156 4.156 5 C 0.056 3.944 6 H 0.073 0.927 7 N -0.350 5.350 8 C 0.338 3.662 9 O -0.464 6.464 10 C -0.123 4.123 11 C -0.116 4.116 12 C -0.099 4.099 13 C -0.104 4.104 14 C -0.082 4.082 15 C -0.182 4.182 16 C -0.047 4.047 17 N -0.224 5.224 18 C -0.027 4.027 19 C -0.074 4.074 20 C -0.171 4.171 21 C 0.056 3.944 22 N -0.326 5.326 23 C -0.375 4.375 24 H 0.101 0.899 25 C -0.255 4.255 26 N -0.590 5.590 27 Si 0.794 3.206 28 H -0.215 1.215 29 H -0.229 1.229 30 H -0.187 1.187 31 H 0.058 0.942 32 H 0.097 0.903 33 H 0.076 0.924 34 H 0.099 0.901 35 H 0.110 0.890 36 H 0.254 0.746 37 H 0.179 0.821 38 H 0.198 0.802 39 H 0.199 0.801 40 H 0.197 0.803 41 H 0.203 0.797 42 H 0.137 0.863 43 H 0.059 0.941 44 H 0.084 0.916 45 H 0.003 0.997 46 H 0.075 0.925 47 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 5.228 -9.401 -28.782 30.726 hybrid contribution -0.340 -0.497 1.168 1.314 sum 4.888 -9.898 -27.614 29.739 Atomic orbital electron populations 1.21705 0.93619 1.01855 1.01175 1.20663 0.94881 0.92839 0.86463 0.97287 1.22193 0.91887 1.02595 0.98954 1.20727 0.95352 0.95146 0.83156 0.92701 1.45892 1.12756 1.48303 1.28001 1.18707 0.82113 0.80850 0.84509 1.90780 1.57588 1.39503 1.58547 1.19838 0.95178 1.01093 0.96238 1.21232 1.00333 0.94900 0.95116 1.21355 0.93914 0.98913 0.95734 1.19316 0.95860 0.97939 0.97292 1.22021 0.96604 0.96409 0.93135 1.22417 0.94724 0.98857 1.02220 1.23677 1.01516 0.90772 0.88748 1.68003 1.14020 1.24374 1.16024 1.18845 0.90918 0.97282 0.95659 1.21154 0.94691 0.97194 0.94319 1.22319 0.98865 0.99777 0.96150 1.20446 0.83767 0.95377 0.94780 1.44436 1.02527 1.65572 1.20099 1.19580 0.95353 1.36034 0.86561 0.89927 1.25913 0.99148 1.01320 0.99144 1.70208 1.25411 1.46696 1.16676 0.85279 0.79148 0.78059 0.78075 1.21490 1.22931 1.18682 0.94218 0.90350 0.92364 0.90067 0.88991 0.74561 0.82099 0.80173 0.80070 0.80299 0.79700 0.86298 0.94109 0.91621 0.99727 0.92512 0.94509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.26 7.94 71.98 0.57 -3.69 16 2 C 0.16 6.23 3.50 44.97 0.16 6.39 16 3 H 0.01 0.40 8.14 -2.38 -0.02 0.38 16 4 C -0.12 -3.53 4.84 30.67 0.15 -3.38 16 5 C 0.16 5.57 2.42 45.02 0.11 5.67 16 6 H 0.05 2.25 7.58 -2.39 -0.02 2.23 16 7 N -0.70 -18.93 5.03 -445.24 -2.24 -21.16 16 8 C 0.55 17.59 7.73 86.80 0.67 18.26 16 9 O -0.58 -24.69 15.96 -3.86 -0.06 -24.75 16 10 C -0.12 -3.01 5.87 -20.11 -0.12 -3.13 16 11 C -0.10 -1.54 9.44 22.28 0.21 -1.33 16 12 C -0.08 -0.97 9.74 22.27 0.22 -0.75 16 13 C -0.10 -1.65 5.75 -21.22 -0.12 -1.77 16 14 C -0.06 -0.49 9.88 22.51 0.22 -0.27 16 15 C -0.16 -1.29 10.03 22.16 0.22 -1.07 16 16 C 0.13 1.76 11.15 85.10 0.95 2.71 16 17 N -0.52 -12.20 10.34 -188.65 -1.95 -14.15 16 18 C 0.09 2.24 6.60 40.25 0.27 2.51 16 19 C -0.05 -1.52 9.56 22.85 0.22 -1.31 16 20 C -0.13 -5.39 5.65 30.67 0.17 -5.21 16 21 C 0.18 9.39 5.29 86.36 0.46 9.84 16 22 N -0.60 -29.86 2.99 -675.23 -2.02 -31.88 16 23 C -0.25 -13.04 8.60 84.03 0.72 -12.32 16 24 H 0.08 4.13 6.21 -2.91 -0.02 4.12 16 25 C -0.06 -3.42 4.96 84.86 0.42 -3.00 16 26 N -0.94 -57.58 11.14 21.65 0.24 -57.34 16 27 Si 0.97 45.10 29.58 68.60 2.03 47.12 16 28 H -0.29 -13.29 7.11 99.48 0.71 -12.58 16 29 H -0.30 -14.50 7.11 99.48 0.71 -13.79 16 30 H -0.26 -11.40 7.11 99.48 0.71 -10.69 16 31 H 0.04 1.51 7.62 -2.39 -0.02 1.49 16 32 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 33 H 0.06 1.91 7.45 -2.39 -0.02 1.90 16 34 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 35 H 0.09 2.19 8.14 -2.38 -0.02 2.18 16 36 H 0.42 7.63 6.58 -92.71 -0.61 7.02 16 37 H 0.16 1.49 6.34 -2.91 -0.02 1.47 16 38 H 0.18 0.55 8.06 -2.91 -0.02 0.52 16 39 H 0.18 0.09 8.06 -2.91 -0.02 0.06 16 40 H 0.18 -0.04 8.06 -2.91 -0.02 -0.06 16 41 H 0.19 1.38 8.06 -2.91 -0.02 1.35 16 42 H 0.12 3.95 7.60 -2.91 -0.02 3.93 16 43 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 44 H 0.07 2.56 8.14 -2.38 -0.02 2.54 16 45 H -0.02 -0.88 8.14 -2.38 -0.02 -0.90 16 46 H 0.06 3.28 6.06 -2.39 -0.01 3.27 16 47 H 0.25 14.68 8.31 -92.70 -0.77 13.91 16 Total: -1.00 -81.54 378.26 1.88 -79.66 By element: Atomic # 1 Polarization: 13.95 SS G_CDS: 0.38 Total: 14.34 kcal Atomic # 6 Polarization: 2.66 SS G_CDS: 5.50 Total: 8.15 kcal Atomic # 7 Polarization: -118.56 SS G_CDS: -5.97 Total: -124.53 kcal Atomic # 8 Polarization: -24.69 SS G_CDS: -0.06 Total: -24.75 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 2.03 Total: 47.12 kcal Total: -81.54 1.88 -79.66 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947829309.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.465 kcal (2) G-P(sol) polarization free energy of solvation -81.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.663 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds