Wall clock time and date at job start Tue Mar 31 2020 22:16:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 H 1.08997 * 109.70301 * 2 1 4 4 C 1.53196 * 109.58646 * 120.35835 * 2 1 3 5 5 C 1.53038 * 109.31481 * 65.14977 * 4 2 1 6 6 H 1.08996 * 109.44902 * 301.35165 * 5 4 2 7 7 N 1.46502 * 109.46069 * 181.38290 * 5 4 2 8 8 C 1.34776 * 119.99833 * 154.92710 * 7 5 4 9 9 O 1.21549 * 119.99870 * 0.02562 * 8 7 5 10 10 C 1.47882 * 120.00024 * 179.97438 * 8 7 5 11 11 C 1.40580 * 119.70533 * 359.97438 * 10 8 7 12 12 C 1.35819 * 120.73667 * 180.02562 * 11 10 8 13 13 C 1.40545 * 119.98096 * 359.97438 * 12 11 10 14 14 C 1.40823 * 121.13448 * 180.02562 * 13 12 11 15 15 C 1.36564 * 118.19412 * 179.17781 * 14 13 12 16 16 C 1.39425 * 119.93536 * 0.85393 * 15 14 13 17 17 N 1.31016 * 121.71625 * 359.39548 * 16 15 14 18 18 C 1.33746 * 121.34809 * 0.02562 * 17 16 15 19 19 C 1.38400 * 119.71145 * 180.02562 * 10 8 7 20 20 C 1.53046 * 109.53740 * 61.36772 * 5 4 2 21 21 C 1.53194 * 109.30904 * 298.63138 * 20 5 4 22 22 N 1.46925 * 108.77529 * 54.63956 * 21 20 5 23 23 C 1.36944 * 120.63230 * 126.40966 * 22 21 20 24 24 H 1.07998 * 119.99903 * 207.67620 * 23 22 21 25 25 C 1.38807 * 119.99780 * 27.67488 * 23 22 21 26 26 N 1.31620 * 120.00170 * 17.36213 * 25 23 22 27 27 Si 1.86802 * 119.99859 * 197.35317 * 25 23 22 28 28 H 1.48502 * 109.46834 * 90.00396 * 27 25 23 29 29 H 1.48495 * 109.47098 * 210.00418 * 27 25 23 30 30 H 1.48502 * 109.47214 * 330.00077 * 27 25 23 31 31 H 1.09003 * 109.47710 * 180.35834 * 1 2 3 32 32 H 1.09004 * 109.47407 * 300.35247 * 1 2 3 33 33 H 1.08996 * 109.47393 * 60.35505 * 1 2 3 34 34 H 1.08995 * 109.49580 * 305.19372 * 4 2 1 35 35 H 1.09002 * 109.49717 * 185.10223 * 4 2 1 36 36 H 0.97000 * 119.99836 * 334.93582 * 7 5 4 37 37 H 1.07994 * 119.63234 * 359.97438 * 11 10 8 38 38 H 1.07992 * 120.00710 * 179.97438 * 12 11 10 39 39 H 1.07991 * 120.89951 * 359.96981 * 14 13 12 40 40 H 1.07995 * 120.02907 * 180.24972 * 15 14 13 41 41 H 1.08003 * 119.13746 * 179.41866 * 16 15 14 42 42 H 1.08009 * 120.23230 * 359.97438 * 19 10 8 43 43 H 1.08999 * 109.49990 * 58.58296 * 20 5 4 44 44 H 1.08998 * 109.49381 * 178.65595 * 20 5 4 45 45 H 1.09001 * 109.58279 * 174.42216 * 21 20 5 46 46 H 1.08994 * 109.59332 * 294.70701 * 21 20 5 47 47 H 0.96999 * 120.00171 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8974 1.0262 0.0000 4 6 2.0435 -0.7295 1.2454 5 6 1.6413 -2.2041 1.1701 6 1 0.5564 -2.2813 1.0992 7 7 2.1023 -2.8979 2.3753 8 6 1.4740 -4.0153 2.7916 9 8 0.5253 -4.4476 2.1667 10 6 1.9397 -4.7159 4.0078 11 6 3.0385 -4.2113 4.7248 12 6 3.4840 -4.8383 5.8443 13 6 2.8444 -6.0047 6.2977 14 6 3.2856 -6.6739 7.4555 15 6 2.6094 -7.7924 7.8514 16 6 1.5257 -8.2514 7.1039 17 7 1.1210 -7.6295 6.0241 18 6 1.7321 -6.5224 5.5885 19 6 1.2905 -5.8631 4.4295 20 6 2.2799 -2.8465 -0.0635 21 6 1.7690 -2.1411 -1.3237 22 7 2.0224 -0.6996 -1.1945 23 6 2.7043 -0.0209 -2.1690 24 1 3.2695 0.8639 -1.9161 25 6 2.6691 -0.4703 -3.4819 26 7 1.7363 -1.3172 -3.8628 27 14 3.9453 0.1271 -4.7082 28 1 5.1160 -0.7863 -4.6887 29 1 3.3534 0.1442 -6.0699 30 1 4.3811 1.4984 -4.3407 31 1 -0.3634 -1.0276 0.0064 32 1 -0.3634 0.5193 0.8868 33 1 -0.3634 0.5083 -0.8931 34 1 1.6075 -0.2785 2.1368 35 1 3.1296 -0.6504 1.2913 36 1 2.8595 -2.5529 2.8738 37 1 3.5345 -3.3156 4.3812 38 1 4.3295 -4.4406 6.3858 39 1 4.1278 -6.3053 8.0221 40 1 2.9199 -8.3264 8.7373 41 1 1.0061 -9.1426 7.4236 42 1 0.4470 -6.2461 3.8740 43 1 3.3639 -2.7475 -0.0053 44 1 2.0125 -3.9024 -0.1034 45 1 2.2943 -2.5275 -2.1971 46 1 0.6990 -2.3177 -1.4331 47 1 1.7119 -1.6315 -4.7801 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000947829310.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:16:27 Heat of formation + Delta-G solvation = 38.970112 kcal Electronic energy + Delta-G solvation = -28595.232977 eV Core-core repulsion = 24743.155077 eV Total energy + Delta-G solvation = -3852.077901 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -41.21602 -39.81632 -37.93365 -36.87041 -34.58140 -33.82632 -32.59298 -31.38496 -30.53479 -30.34487 -29.40342 -26.96027 -25.30254 -24.23813 -24.11591 -22.57844 -21.97167 -21.76465 -20.71707 -19.00206 -18.12211 -17.78314 -17.24508 -16.77119 -16.16970 -15.85050 -15.00106 -14.83825 -14.77238 -14.42909 -14.31947 -14.18228 -13.85879 -13.74994 -13.70568 -13.42651 -13.07069 -12.66607 -12.50294 -12.23073 -12.16803 -11.96477 -11.90700 -11.39753 -11.06981 -10.93756 -10.90974 -10.79258 -10.62107 -10.34914 -10.17345 -10.06365 -9.89181 -9.80197 -9.71507 -9.35881 -9.17713 -8.75637 -8.61693 -8.39942 -6.68890 -5.77619 -3.20292 -0.06770 0.29501 1.55640 2.22755 3.18586 3.23032 3.38485 3.45155 3.46429 3.82029 3.93962 4.17823 4.32497 4.46746 4.49132 4.54414 4.62177 4.79120 4.83939 5.10166 5.27878 5.38514 5.39793 5.40727 5.50586 5.54883 5.60262 5.68914 5.78858 5.91179 5.97050 6.02312 6.06982 6.13196 6.26244 6.30585 6.38232 6.42772 6.47113 6.58622 6.65882 6.80325 6.88073 6.95557 7.16615 7.39658 7.53075 7.64291 7.71871 7.80848 8.31955 8.46242 9.21996 9.85486 10.42063 11.30536 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.024690 B = 0.002155 C = 0.002146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1133.786190 B =12992.346885 C =13043.429778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.170 3.830 3 H 0.066 0.934 4 C -0.133 4.133 5 C 0.149 3.851 6 H 0.087 0.913 7 N -0.717 5.717 8 C 0.552 3.448 9 O -0.530 6.530 10 C -0.112 4.112 11 C -0.089 4.089 12 C -0.102 4.102 13 C -0.089 4.089 14 C -0.061 4.061 15 C -0.170 4.170 16 C 0.128 3.872 17 N -0.465 5.465 18 C 0.117 3.883 19 C -0.025 4.025 20 C -0.147 4.147 21 C 0.173 3.827 22 N -0.585 5.585 23 C -0.253 4.253 24 H 0.066 0.934 25 C 0.003 3.997 26 N -0.900 5.900 27 Si 0.902 3.098 28 H -0.288 1.288 29 H -0.292 1.292 30 H -0.279 1.279 31 H 0.049 0.951 32 H 0.036 0.964 33 H 0.055 0.945 34 H 0.056 0.944 35 H 0.063 0.937 36 H 0.394 0.606 37 H 0.133 0.867 38 H 0.136 0.864 39 H 0.141 0.859 40 H 0.139 0.861 41 H 0.161 0.839 42 H 0.152 0.848 43 H 0.055 0.945 44 H 0.053 0.947 45 H 0.089 0.911 46 H 0.022 0.978 47 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.311 -9.121 25.259 27.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.062 3.938 3 H 0.084 0.916 4 C -0.173 4.173 5 C 0.046 3.954 6 H 0.105 0.895 7 N -0.367 5.367 8 C 0.338 3.662 9 O -0.408 6.408 10 C -0.117 4.117 11 C -0.107 4.107 12 C -0.121 4.121 13 C -0.091 4.091 14 C -0.087 4.087 15 C -0.190 4.190 16 C -0.045 4.045 17 N -0.173 5.173 18 C -0.004 4.004 19 C -0.045 4.045 20 C -0.187 4.187 21 C 0.047 3.953 22 N -0.306 5.306 23 C -0.382 4.382 24 H 0.084 0.916 25 C -0.196 4.196 26 N -0.544 5.544 27 Si 0.732 3.268 28 H -0.215 1.215 29 H -0.218 1.218 30 H -0.205 1.205 31 H 0.068 0.932 32 H 0.055 0.945 33 H 0.074 0.926 34 H 0.075 0.925 35 H 0.081 0.919 36 H 0.228 0.772 37 H 0.151 0.849 38 H 0.154 0.846 39 H 0.158 0.842 40 H 0.157 0.843 41 H 0.178 0.822 42 H 0.169 0.831 43 H 0.073 0.927 44 H 0.072 0.928 45 H 0.107 0.893 46 H 0.040 0.960 47 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 2.878 -9.688 24.016 26.056 hybrid contribution 1.776 0.640 0.120 1.891 sum 4.654 -9.048 24.135 26.193 Atomic orbital electron populations 1.22307 0.98666 1.01157 1.00110 1.20437 0.91812 0.95091 0.86481 0.91603 1.22310 1.01167 0.94082 0.99699 1.21166 0.99988 0.91314 0.82931 0.89456 1.46266 1.34388 1.26860 1.29202 1.18159 0.83072 0.80968 0.84004 1.90805 1.27734 1.65539 1.56702 1.20063 0.97637 0.96991 0.96971 1.21013 0.95262 0.99719 0.94742 1.20864 0.99946 0.94404 0.96845 1.18962 0.96810 0.96863 0.96501 1.21520 0.98572 0.94320 0.94293 1.21973 0.97448 0.97894 1.01695 1.23031 0.93441 0.98196 0.89862 1.68045 1.28695 1.06856 1.13685 1.18783 0.93094 0.92974 0.95508 1.21279 0.98308 0.92043 0.92846 1.22579 1.00157 0.99234 0.96775 1.20744 0.97809 0.82875 0.93862 1.44175 1.63771 1.03455 1.19233 1.19164 1.22058 1.10261 0.86748 0.91632 1.25051 0.97701 1.00038 0.96806 1.70037 1.31641 1.35710 1.16967 0.86304 0.81367 0.78440 0.80717 1.21507 1.21821 1.20480 0.93165 0.94490 0.92572 0.92541 0.91860 0.77162 0.84937 0.84623 0.84168 0.84331 0.82165 0.83075 0.92654 0.92847 0.89261 0.96003 0.93598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.12 9.03 37.15 0.34 -2.78 16 2 C 0.17 3.39 3.29 -67.60 -0.22 3.16 16 3 H 0.07 1.30 7.93 -51.93 -0.41 0.89 16 4 C -0.13 -2.16 5.02 -26.61 -0.13 -2.29 16 5 C 0.15 2.56 2.21 -67.89 -0.15 2.41 16 6 H 0.09 1.69 5.92 -51.93 -0.31 1.39 16 7 N -0.72 -10.05 5.03 -54.70 -0.27 -10.33 16 8 C 0.55 8.50 7.73 -12.31 -0.10 8.41 16 9 O -0.53 -10.30 15.96 5.32 0.08 -10.22 16 10 C -0.11 -1.39 5.87 -105.01 -0.62 -2.01 16 11 C -0.09 -0.82 9.44 -39.57 -0.37 -1.20 16 12 C -0.10 -0.82 9.74 -39.58 -0.39 -1.20 16 13 C -0.09 -0.84 5.75 -106.73 -0.61 -1.46 16 14 C -0.06 -0.41 9.89 -39.21 -0.39 -0.80 16 15 C -0.17 -1.03 10.03 -39.74 -0.40 -1.42 16 16 C 0.13 1.01 11.15 -17.46 -0.19 0.82 16 17 N -0.47 -5.37 10.34 -10.98 -0.11 -5.49 16 18 C 0.12 1.39 6.60 -84.87 -0.56 0.83 16 19 C -0.03 -0.33 9.56 -38.69 -0.37 -0.70 16 20 C -0.15 -2.92 5.65 -26.61 -0.15 -3.07 16 21 C 0.17 4.16 4.89 -3.71 -0.02 4.14 16 22 N -0.58 -14.14 2.70 -164.78 -0.45 -14.58 16 23 C -0.25 -6.76 9.59 -15.06 -0.14 -6.90 16 24 H 0.07 1.72 7.89 -52.49 -0.41 1.30 16 25 C 0.00 0.08 4.91 -17.43 -0.09 0.00 16 26 N -0.90 -26.03 11.19 55.49 0.62 -25.41 16 27 Si 0.90 21.54 29.59 -169.99 -5.03 16.51 16 28 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 29 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 30 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 31 H 0.05 1.00 5.73 -51.93 -0.30 0.70 16 32 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 34 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 35 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.39 4.23 6.59 -40.82 -0.27 3.96 16 37 H 0.13 0.91 6.34 -52.49 -0.33 0.57 16 38 H 0.14 0.67 8.06 -52.49 -0.42 0.24 16 39 H 0.14 0.52 8.06 -52.49 -0.42 0.10 16 40 H 0.14 0.39 8.06 -52.49 -0.42 -0.03 16 41 H 0.16 0.76 8.06 -52.48 -0.42 0.33 16 42 H 0.15 2.12 7.61 -52.48 -0.40 1.72 16 43 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 44 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 45 H 0.09 2.41 6.04 -51.93 -0.31 2.10 16 46 H 0.02 0.56 7.51 -51.93 -0.39 0.17 16 47 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 LS Contribution 377.39 15.07 5.69 5.69 Total: -1.00 -33.20 377.39 -10.53 -43.74 By element: Atomic # 1 Polarization: 10.65 SS G_CDS: -6.50 Total: 4.15 kcal Atomic # 6 Polarization: 0.50 SS G_CDS: -4.56 Total: -4.07 kcal Atomic # 7 Polarization: -55.59 SS G_CDS: -0.21 Total: -55.81 kcal Atomic # 8 Polarization: -10.30 SS G_CDS: 0.08 Total: -10.22 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.03 Total: 16.51 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -33.20 -10.53 -43.74 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947829310.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.706 kcal (2) G-P(sol) polarization free energy of solvation -33.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.736 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds