Wall clock time and date at job start Tue Mar 31 2020 22:16:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 H 1.08997 * 109.70301 * 2 1 4 4 C 1.53196 * 109.58646 * 120.35835 * 2 1 3 5 5 C 1.53038 * 109.31481 * 65.14977 * 4 2 1 6 6 H 1.08996 * 109.44902 * 301.35165 * 5 4 2 7 7 N 1.46502 * 109.46069 * 181.38290 * 5 4 2 8 8 C 1.34776 * 119.99833 * 154.92710 * 7 5 4 9 9 O 1.21549 * 119.99870 * 0.02562 * 8 7 5 10 10 C 1.47882 * 120.00024 * 179.97438 * 8 7 5 11 11 C 1.40580 * 119.70533 * 359.97438 * 10 8 7 12 12 C 1.35819 * 120.73667 * 180.02562 * 11 10 8 13 13 C 1.40545 * 119.98096 * 359.97438 * 12 11 10 14 14 C 1.40823 * 121.13448 * 180.02562 * 13 12 11 15 15 C 1.36564 * 118.19412 * 179.17781 * 14 13 12 16 16 C 1.39425 * 119.93536 * 0.85393 * 15 14 13 17 17 N 1.31016 * 121.71625 * 359.39548 * 16 15 14 18 18 C 1.33746 * 121.34809 * 0.02562 * 17 16 15 19 19 C 1.38400 * 119.71145 * 180.02562 * 10 8 7 20 20 C 1.53046 * 109.53740 * 61.36772 * 5 4 2 21 21 C 1.53194 * 109.30904 * 298.63138 * 20 5 4 22 22 N 1.46925 * 108.77529 * 54.63956 * 21 20 5 23 23 C 1.36944 * 120.63230 * 126.40966 * 22 21 20 24 24 H 1.07998 * 119.99903 * 207.67620 * 23 22 21 25 25 C 1.38807 * 119.99780 * 27.67488 * 23 22 21 26 26 N 1.31620 * 120.00170 * 17.36213 * 25 23 22 27 27 Si 1.86802 * 119.99859 * 197.35317 * 25 23 22 28 28 H 1.48502 * 109.46834 * 90.00396 * 27 25 23 29 29 H 1.48495 * 109.47098 * 210.00418 * 27 25 23 30 30 H 1.48502 * 109.47214 * 330.00077 * 27 25 23 31 31 H 1.09003 * 109.47710 * 180.35834 * 1 2 3 32 32 H 1.09004 * 109.47407 * 300.35247 * 1 2 3 33 33 H 1.08996 * 109.47393 * 60.35505 * 1 2 3 34 34 H 1.08995 * 109.49580 * 305.19372 * 4 2 1 35 35 H 1.09002 * 109.49717 * 185.10223 * 4 2 1 36 36 H 0.97000 * 119.99836 * 334.93582 * 7 5 4 37 37 H 1.07994 * 119.63234 * 359.97438 * 11 10 8 38 38 H 1.07992 * 120.00710 * 179.97438 * 12 11 10 39 39 H 1.07991 * 120.89951 * 359.96981 * 14 13 12 40 40 H 1.07995 * 120.02907 * 180.24972 * 15 14 13 41 41 H 1.08003 * 119.13746 * 179.41866 * 16 15 14 42 42 H 1.08009 * 120.23230 * 359.97438 * 19 10 8 43 43 H 1.08999 * 109.49990 * 58.58296 * 20 5 4 44 44 H 1.08998 * 109.49381 * 178.65595 * 20 5 4 45 45 H 1.09001 * 109.58279 * 174.42216 * 21 20 5 46 46 H 1.08994 * 109.59332 * 294.70701 * 21 20 5 47 47 H 0.96999 * 120.00171 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8974 1.0262 0.0000 4 6 2.0435 -0.7295 1.2454 5 6 1.6413 -2.2041 1.1701 6 1 0.5564 -2.2813 1.0992 7 7 2.1023 -2.8979 2.3753 8 6 1.4740 -4.0153 2.7916 9 8 0.5253 -4.4476 2.1667 10 6 1.9397 -4.7159 4.0078 11 6 3.0385 -4.2113 4.7248 12 6 3.4840 -4.8383 5.8443 13 6 2.8444 -6.0047 6.2977 14 6 3.2856 -6.6739 7.4555 15 6 2.6094 -7.7924 7.8514 16 6 1.5257 -8.2514 7.1039 17 7 1.1210 -7.6295 6.0241 18 6 1.7321 -6.5224 5.5885 19 6 1.2905 -5.8631 4.4295 20 6 2.2799 -2.8465 -0.0635 21 6 1.7690 -2.1411 -1.3237 22 7 2.0224 -0.6996 -1.1945 23 6 2.7043 -0.0209 -2.1690 24 1 3.2695 0.8639 -1.9161 25 6 2.6691 -0.4703 -3.4819 26 7 1.7363 -1.3172 -3.8628 27 14 3.9453 0.1271 -4.7082 28 1 5.1160 -0.7863 -4.6887 29 1 3.3534 0.1442 -6.0699 30 1 4.3811 1.4984 -4.3407 31 1 -0.3634 -1.0276 0.0064 32 1 -0.3634 0.5193 0.8868 33 1 -0.3634 0.5083 -0.8931 34 1 1.6075 -0.2785 2.1368 35 1 3.1296 -0.6504 1.2913 36 1 2.8595 -2.5529 2.8738 37 1 3.5345 -3.3156 4.3812 38 1 4.3295 -4.4406 6.3858 39 1 4.1278 -6.3053 8.0221 40 1 2.9199 -8.3264 8.7373 41 1 1.0061 -9.1426 7.4236 42 1 0.4470 -6.2461 3.8740 43 1 3.3639 -2.7475 -0.0053 44 1 2.0125 -3.9024 -0.1034 45 1 2.2943 -2.5275 -2.1971 46 1 0.6990 -2.3177 -1.4331 47 1 1.7119 -1.6315 -4.7801 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000947829310.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:16:26 Heat of formation + Delta-G solvation = 17.788105 kcal Electronic energy + Delta-G solvation = -28596.151498 eV Core-core repulsion = 24743.155077 eV Total energy + Delta-G solvation = -3852.996421 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -41.96362 -41.00943 -39.42492 -37.73037 -36.12066 -34.47665 -34.35963 -32.67975 -31.94925 -31.04509 -30.92713 -28.57211 -26.47822 -25.71206 -24.87245 -23.77708 -23.45384 -22.93357 -21.92586 -20.33418 -19.44618 -18.75161 -18.35479 -17.93088 -17.20010 -17.11700 -16.56957 -16.14819 -15.71259 -15.51900 -15.49254 -15.32627 -15.15697 -14.99241 -14.65002 -14.56009 -14.31280 -14.13607 -13.91787 -13.89271 -13.16512 -12.95682 -12.93214 -12.73382 -12.67137 -12.55429 -12.51695 -12.29783 -12.04234 -11.98994 -11.77192 -11.56406 -11.50387 -11.24731 -10.94404 -10.55698 -10.49104 -10.12108 -9.81027 -9.33835 -8.69012 -7.84833 -5.29977 -0.78381 -0.36582 0.86288 1.45333 1.47912 1.49275 1.57982 2.02477 2.26169 2.52532 3.08536 3.26659 3.31186 3.52371 3.59512 3.65460 3.82803 3.83673 3.96152 4.04474 4.07217 4.08014 4.27793 4.31319 4.44297 4.51902 4.57890 4.70740 4.72846 4.74482 4.84427 4.85189 4.87292 4.96817 5.08179 5.09162 5.12343 5.16334 5.18439 5.30972 5.33706 5.43893 5.45809 5.52676 5.56764 5.69276 5.75697 5.78019 6.41423 6.51220 6.91333 7.16056 7.16527 7.88257 8.40681 9.21822 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.024690 B = 0.002155 C = 0.002146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1133.786190 B =12992.346885 C =13043.429778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.160 3.840 3 H 0.074 0.926 4 C -0.117 4.117 5 C 0.160 3.840 6 H 0.063 0.937 7 N -0.699 5.699 8 C 0.550 3.450 9 O -0.583 6.583 10 C -0.119 4.119 11 C -0.098 4.098 12 C -0.081 4.081 13 C -0.102 4.102 14 C -0.056 4.056 15 C -0.163 4.163 16 C 0.126 3.874 17 N -0.515 5.515 18 C 0.093 3.907 19 C -0.054 4.054 20 C -0.133 4.133 21 C 0.185 3.815 22 N -0.599 5.599 23 C -0.254 4.254 24 H 0.075 0.925 25 C -0.056 4.056 26 N -0.938 5.938 27 Si 0.966 3.034 28 H -0.287 1.287 29 H -0.301 1.301 30 H -0.264 1.264 31 H 0.032 0.968 32 H 0.075 0.925 33 H 0.028 0.972 34 H 0.093 0.907 35 H 0.078 0.922 36 H 0.415 0.585 37 H 0.161 0.839 38 H 0.181 0.819 39 H 0.182 0.818 40 H 0.179 0.821 41 H 0.186 0.814 42 H 0.119 0.881 43 H 0.063 0.937 44 H 0.039 0.961 45 H 0.053 0.947 46 H -0.011 1.011 47 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.706 -8.149 29.900 31.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.053 3.947 3 H 0.092 0.908 4 C -0.157 4.157 5 C 0.056 3.944 6 H 0.081 0.919 7 N -0.350 5.350 8 C 0.338 3.662 9 O -0.464 6.464 10 C -0.123 4.123 11 C -0.116 4.116 12 C -0.100 4.100 13 C -0.104 4.104 14 C -0.082 4.082 15 C -0.182 4.182 16 C -0.047 4.047 17 N -0.224 5.224 18 C -0.027 4.027 19 C -0.074 4.074 20 C -0.173 4.173 21 C 0.058 3.942 22 N -0.321 5.321 23 C -0.385 4.385 24 H 0.092 0.908 25 C -0.251 4.251 26 N -0.584 5.584 27 Si 0.795 3.205 28 H -0.214 1.214 29 H -0.228 1.228 30 H -0.188 1.188 31 H 0.051 0.949 32 H 0.094 0.906 33 H 0.047 0.953 34 H 0.112 0.888 35 H 0.097 0.903 36 H 0.254 0.746 37 H 0.179 0.821 38 H 0.198 0.802 39 H 0.199 0.801 40 H 0.197 0.803 41 H 0.203 0.797 42 H 0.137 0.863 43 H 0.082 0.918 44 H 0.058 0.942 45 H 0.071 0.929 46 H 0.007 0.993 47 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 6.312 -8.680 28.718 30.658 hybrid contribution 0.674 0.218 -1.153 1.353 sum 6.986 -8.462 27.565 29.669 Atomic orbital electron populations 1.22203 0.98380 1.00209 1.00605 1.20726 0.92073 0.95653 0.86254 0.90801 1.22146 1.02197 0.92333 0.98986 1.20790 0.98370 0.92340 0.82936 0.91925 1.45917 1.34805 1.26254 1.28070 1.18691 0.82209 0.80786 0.84484 1.90780 1.30147 1.66895 1.58546 1.19847 0.99321 0.96912 0.96269 1.21235 0.94321 1.00905 0.95122 1.21349 0.99899 0.92922 0.95784 1.19311 0.96054 0.97687 0.97358 1.22023 0.99246 0.93828 0.93091 1.22421 0.95967 0.97627 1.02211 1.23676 0.93929 0.98370 0.88748 1.68007 1.30529 1.07921 1.15940 1.18849 0.94595 0.93626 0.95638 1.21156 0.98531 0.93413 0.94258 1.22333 1.00489 0.98111 0.96345 1.20401 0.95396 0.83829 0.94585 1.44385 1.64096 1.03484 1.20123 1.19556 1.21573 1.10043 0.87280 0.90764 1.25835 0.99570 1.00871 0.98783 1.70215 1.33694 1.37675 1.16826 0.85274 0.78777 0.78534 0.77913 1.21430 1.22789 1.18849 0.94907 0.90631 0.95266 0.88812 0.90298 0.74632 0.82114 0.80214 0.80097 0.80315 0.79701 0.86272 0.91790 0.94182 0.92855 0.99297 0.94383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.91 9.03 71.98 0.65 -5.26 16 2 C 0.16 6.19 3.29 44.97 0.15 6.34 16 3 H 0.07 2.76 7.93 -2.39 -0.02 2.74 16 4 C -0.12 -3.49 5.02 30.67 0.15 -3.34 16 5 C 0.16 5.44 2.21 45.02 0.10 5.54 16 6 H 0.06 2.50 5.92 -2.39 -0.01 2.49 16 7 N -0.70 -18.77 5.03 -445.24 -2.24 -21.00 16 8 C 0.55 17.44 7.73 86.80 0.67 18.12 16 9 O -0.58 -24.43 15.96 -3.87 -0.06 -24.49 16 10 C -0.12 -3.00 5.87 -20.11 -0.12 -3.12 16 11 C -0.10 -1.54 9.44 22.28 0.21 -1.33 16 12 C -0.08 -0.97 9.74 22.27 0.22 -0.76 16 13 C -0.10 -1.65 5.75 -21.23 -0.12 -1.77 16 14 C -0.06 -0.50 9.89 22.51 0.22 -0.27 16 15 C -0.16 -1.29 10.03 22.16 0.22 -1.07 16 16 C 0.13 1.76 11.15 85.10 0.95 2.71 16 17 N -0.52 -12.16 10.34 -188.65 -1.95 -14.11 16 18 C 0.09 2.23 6.60 40.25 0.27 2.50 16 19 C -0.05 -1.52 9.56 22.85 0.22 -1.30 16 20 C -0.13 -5.42 5.65 30.67 0.17 -5.25 16 21 C 0.18 9.35 4.89 86.36 0.42 9.78 16 22 N -0.60 -29.41 2.70 -675.24 -1.82 -31.24 16 23 C -0.25 -13.69 9.59 84.03 0.81 -12.89 16 24 H 0.07 3.81 7.89 -2.91 -0.02 3.79 16 25 C -0.06 -3.12 4.91 84.86 0.42 -2.70 16 26 N -0.94 -56.94 11.19 21.65 0.24 -56.70 16 27 Si 0.97 45.10 29.59 68.60 2.03 47.13 16 28 H -0.29 -13.25 7.11 99.48 0.71 -12.54 16 29 H -0.30 -14.36 7.11 99.48 0.71 -13.65 16 30 H -0.26 -11.53 7.11 99.48 0.71 -10.82 16 31 H 0.03 1.34 5.73 -2.39 -0.01 1.33 16 32 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 33 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 34 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 35 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 36 H 0.42 7.57 6.59 -92.71 -0.61 6.95 16 37 H 0.16 1.49 6.34 -2.91 -0.02 1.47 16 38 H 0.18 0.56 8.06 -2.91 -0.02 0.53 16 39 H 0.18 0.10 8.06 -2.92 -0.02 0.07 16 40 H 0.18 -0.03 8.06 -2.91 -0.02 -0.05 16 41 H 0.19 1.37 8.06 -2.91 -0.02 1.35 16 42 H 0.12 3.94 7.61 -2.91 -0.02 3.92 16 43 H 0.06 2.49 8.14 -2.39 -0.02 2.47 16 44 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 45 H 0.05 3.07 6.04 -2.39 -0.01 3.05 16 46 H -0.01 -0.62 7.51 -2.39 -0.02 -0.64 16 47 H 0.25 14.65 8.31 -92.71 -0.77 13.88 16 Total: -1.00 -80.86 377.39 2.19 -78.67 By element: Atomic # 1 Polarization: 15.43 SS G_CDS: 0.39 Total: 15.82 kcal Atomic # 6 Polarization: 0.32 SS G_CDS: 5.61 Total: 5.92 kcal Atomic # 7 Polarization: -117.28 SS G_CDS: -5.77 Total: -123.05 kcal Atomic # 8 Polarization: -24.43 SS G_CDS: -0.06 Total: -24.49 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 2.03 Total: 47.13 kcal Total: -80.86 2.19 -78.67 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947829310.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.462 kcal (2) G-P(sol) polarization free energy of solvation -80.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.674 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds