Wall clock time and date at job start Tue Mar 31 2020 22:17:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.70540 * 2 1 4 4 C 1.53192 * 109.58316 * 120.35592 * 2 1 3 5 5 C 1.53035 * 109.31596 * 65.15073 * 4 2 1 6 6 H 1.09002 * 109.45675 * 301.34280 * 5 4 2 7 7 N 1.46498 * 109.46103 * 181.38490 * 5 4 2 8 8 C 1.34782 * 119.99985 * 154.99901 * 7 5 4 9 9 O 1.21585 * 119.99807 * 359.97438 * 8 7 5 10 10 C 1.47562 * 119.99925 * 180.02562 * 8 7 5 11 11 C 1.38703 * 120.43542 * 5.82386 * 10 8 7 12 12 C 1.38999 * 120.75467 * 179.97438 * 11 10 8 13 13 C 1.36349 * 121.18855 * 0.02562 * 12 11 10 14 14 C 1.40351 * 119.92901 * 359.97438 * 13 12 11 15 15 C 1.40679 * 122.09896 * 179.97438 * 14 13 12 16 16 C 1.36263 * 118.66416 * 180.02562 * 15 14 13 17 17 N 1.32508 * 121.84290 * 359.97438 * 16 15 14 18 18 C 1.31315 * 122.71848 * 0.02562 * 17 16 15 19 19 C 1.40138 * 119.91882 * 359.74094 * 18 17 16 20 20 C 1.53037 * 109.53753 * 61.36543 * 5 4 2 21 21 C 1.53197 * 109.31390 * 298.63261 * 20 5 4 22 22 N 1.46922 * 109.58534 * 239.63878 * 2 1 3 23 23 C 1.36948 * 120.62847 * 113.80118 * 22 2 1 24 24 H 1.07998 * 119.99277 * 31.29186 * 23 22 2 25 25 C 1.38808 * 120.00127 * 211.28929 * 23 22 2 26 26 N 1.31623 * 119.99673 * 9.92318 * 25 23 22 27 27 Si 1.86797 * 119.99938 * 189.92350 * 25 23 22 28 28 H 1.48502 * 109.47237 * 90.00163 * 27 25 23 29 29 H 1.48500 * 109.47038 * 210.00305 * 27 25 23 30 30 H 1.48496 * 109.47130 * 329.99869 * 27 25 23 31 31 H 1.08994 * 109.47826 * 180.35630 * 1 2 3 32 32 H 1.09001 * 109.47262 * 300.35972 * 1 2 3 33 33 H 1.09005 * 109.46850 * 60.35578 * 1 2 3 34 34 H 1.09008 * 109.49610 * 185.10438 * 4 2 1 35 35 H 1.09006 * 109.49948 * 305.16362 * 4 2 1 36 36 H 0.96996 * 120.00000 * 334.99713 * 7 5 4 37 37 H 1.07997 * 119.62509 * 359.97438 * 11 10 8 38 38 H 1.08002 * 119.40725 * 180.02562 * 12 11 10 39 39 H 1.08002 * 120.03254 * 179.97438 * 13 12 11 40 40 H 1.07998 * 120.67484 * 0.02562 * 15 14 13 41 41 H 1.08001 * 119.08173 * 180.02562 * 16 15 14 42 42 H 1.08004 * 120.04506 * 179.97438 * 18 17 16 43 43 H 1.08999 * 109.50005 * 178.68672 * 20 5 4 44 44 H 1.08990 * 109.50108 * 58.58410 * 20 5 4 45 45 H 1.08999 * 109.58611 * 294.85544 * 21 20 5 46 46 H 1.08999 * 109.59023 * 174.41973 * 21 20 5 47 47 H 0.97008 * 119.99275 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0435 -0.7294 1.2454 5 6 1.6413 -2.2041 1.1702 6 1 0.5564 -2.2814 1.0994 7 7 2.1022 -2.8977 2.3755 8 6 1.4748 -4.0159 2.7909 9 8 0.5261 -4.4487 2.1656 10 6 1.9386 -4.7143 4.0053 11 6 2.9396 -4.1649 4.7927 12 6 3.3812 -4.8168 5.9382 13 6 2.8469 -6.0113 6.3212 14 6 1.8318 -6.6027 5.5533 15 6 1.2488 -7.8336 5.9057 16 6 0.2683 -8.3443 5.1091 17 7 -0.1462 -7.7143 4.0196 18 6 0.3532 -6.5634 3.6318 19 6 1.3637 -5.9506 4.3850 20 6 2.2799 -2.8464 -0.0633 21 6 1.7691 -2.1411 -1.3237 22 7 2.0225 -0.6997 -1.1944 23 6 2.7044 -0.0210 -2.1690 24 1 3.3163 0.8295 -1.9072 25 6 2.6092 -0.4263 -3.4932 26 7 1.7195 -1.3315 -3.8419 27 14 3.7436 0.3128 -4.7801 28 1 4.9797 -0.5043 -4.8783 29 1 3.0552 0.3294 -6.0958 30 1 4.0976 1.7010 -4.3892 31 1 -0.3634 -1.0275 0.0064 32 1 -0.3634 0.5194 0.8867 33 1 -0.3633 0.5083 -0.8932 34 1 3.1297 -0.6504 1.2914 35 1 1.6079 -0.2780 2.1369 36 1 2.8588 -2.5523 2.8745 37 1 3.3810 -3.2199 4.5126 38 1 4.1616 -4.3691 6.5356 39 1 3.2044 -6.5017 7.2146 40 1 1.5717 -8.3632 6.7898 41 1 -0.1842 -9.2886 5.3736 42 1 -0.0169 -6.0877 2.7356 43 1 2.0121 -3.9022 -0.1036 44 1 3.3638 -2.7475 -0.0051 45 1 0.6986 -2.3156 -1.4316 46 1 2.2944 -2.5276 -2.1971 47 1 1.6533 -1.6150 -4.7672 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000947877776.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:17:31 Heat of formation + Delta-G solvation = 43.444250 kcal Electronic energy + Delta-G solvation = -29113.868046 eV Core-core repulsion = 25261.984158 eV Total energy + Delta-G solvation = -3851.883887 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -41.27581 -39.64793 -37.86878 -37.35468 -34.66291 -33.22109 -32.54575 -31.43190 -30.98219 -30.12119 -29.16098 -26.94053 -25.04025 -24.34952 -23.72919 -23.44788 -21.93989 -21.60182 -20.58677 -18.70888 -18.08348 -17.86373 -16.97870 -16.83187 -16.19716 -15.89428 -15.25797 -15.02208 -14.92277 -14.56393 -14.17044 -13.95523 -13.82472 -13.73886 -13.56644 -13.03822 -12.95786 -12.67822 -12.50831 -12.34870 -12.30889 -12.21557 -11.86190 -11.39113 -11.02490 -10.94216 -10.83392 -10.63566 -10.41396 -10.35054 -10.17349 -10.06555 -9.83541 -9.76550 -9.51498 -9.43228 -9.34797 -8.82961 -8.45482 -8.32514 -6.64265 -5.78120 -3.27044 -0.14466 0.61419 1.41764 2.52078 3.10883 3.18156 3.36885 3.43375 3.44686 3.90091 4.23322 4.29268 4.40360 4.47027 4.50646 4.61555 4.65984 4.79406 5.01224 5.19607 5.33732 5.36285 5.41957 5.43925 5.45347 5.57807 5.65222 5.74569 5.80366 5.85837 5.99989 6.01895 6.05196 6.23441 6.26827 6.35802 6.38958 6.44822 6.56848 6.58218 6.65343 6.79059 6.84974 6.93861 7.15542 7.40409 7.55576 7.73867 7.79143 7.87055 8.23483 8.48196 9.22253 9.83421 10.41272 11.29362 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.020414 B = 0.002497 C = 0.002417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1371.300995 B =11208.784871 C =11579.890813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.170 3.830 3 H 0.066 0.934 4 C -0.133 4.133 5 C 0.148 3.852 6 H 0.089 0.911 7 N -0.713 5.713 8 C 0.555 3.445 9 O -0.529 6.529 10 C -0.093 4.093 11 C -0.083 4.083 12 C -0.106 4.106 13 C -0.091 4.091 14 C -0.030 4.030 15 C -0.167 4.167 16 C 0.079 3.921 17 N -0.490 5.490 18 C 0.149 3.851 19 C -0.081 4.081 20 C -0.148 4.148 21 C 0.174 3.826 22 N -0.585 5.585 23 C -0.254 4.254 24 H 0.064 0.936 25 C 0.006 3.994 26 N -0.902 5.902 27 Si 0.904 3.096 28 H -0.288 1.288 29 H -0.291 1.291 30 H -0.279 1.279 31 H 0.049 0.951 32 H 0.036 0.964 33 H 0.055 0.945 34 H 0.062 0.938 35 H 0.056 0.944 36 H 0.394 0.606 37 H 0.133 0.867 38 H 0.134 0.866 39 H 0.134 0.866 40 H 0.137 0.863 41 H 0.152 0.848 42 H 0.202 0.798 43 H 0.053 0.947 44 H 0.054 0.946 45 H 0.022 0.978 46 H 0.092 0.908 47 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.086 -8.026 22.622 24.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.062 3.938 3 H 0.084 0.916 4 C -0.173 4.173 5 C 0.045 3.955 6 H 0.107 0.893 7 N -0.362 5.362 8 C 0.342 3.658 9 O -0.408 6.408 10 C -0.098 4.098 11 C -0.102 4.102 12 C -0.125 4.125 13 C -0.109 4.109 14 C -0.035 4.035 15 C -0.186 4.186 16 C -0.065 4.065 17 N -0.198 5.198 18 C -0.021 4.021 19 C -0.084 4.084 20 C -0.188 4.188 21 C 0.048 3.952 22 N -0.307 5.307 23 C -0.383 4.383 24 H 0.082 0.918 25 C -0.193 4.193 26 N -0.546 5.546 27 Si 0.734 3.266 28 H -0.215 1.215 29 H -0.217 1.217 30 H -0.205 1.205 31 H 0.068 0.932 32 H 0.055 0.945 33 H 0.074 0.926 34 H 0.081 0.919 35 H 0.074 0.926 36 H 0.229 0.771 37 H 0.151 0.849 38 H 0.152 0.848 39 H 0.152 0.848 40 H 0.155 0.845 41 H 0.169 0.831 42 H 0.218 0.782 43 H 0.072 0.928 44 H 0.073 0.927 45 H 0.040 0.960 46 H 0.110 0.890 47 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 1.707 -8.871 21.550 23.367 hybrid contribution 1.715 0.806 0.222 1.908 sum 3.422 -8.065 21.772 23.469 Atomic orbital electron populations 1.22301 0.98647 1.01144 1.00092 1.20442 0.91807 0.95086 0.86461 0.91625 1.22318 1.01164 0.94036 0.99778 1.21211 1.00090 0.91348 0.82818 0.89281 1.46292 1.34233 1.26522 1.29152 1.18065 0.82980 0.80917 0.83841 1.90586 1.28109 1.64968 1.57152 1.20040 0.98073 0.95321 0.96413 1.21449 0.94941 0.99626 0.94190 1.20906 0.99878 0.95247 0.96491 1.21147 0.95094 0.95550 0.99114 1.18167 0.96149 0.94902 0.94292 1.21857 0.99096 0.95848 1.01838 1.22346 0.94171 0.99348 0.90602 1.67702 1.27494 1.09350 1.15270 1.24701 0.89484 0.89150 0.98771 1.18887 0.98540 0.94955 0.95998 1.22603 1.00134 0.99279 0.96820 1.20778 0.97803 0.82864 0.93747 1.44129 1.63702 1.03472 1.19381 1.19154 1.20536 1.12606 0.86045 0.91799 1.25180 0.97656 0.99307 0.97202 1.69971 1.34319 1.33322 1.16969 0.86271 0.80173 0.78923 0.81229 1.21480 1.21704 1.20464 0.93152 0.94521 0.92589 0.91889 0.92556 0.77081 0.84902 0.84800 0.84778 0.84487 0.83092 0.78182 0.92808 0.92708 0.96001 0.89022 0.93545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.04 9.03 37.16 0.34 -2.71 16 2 C 0.17 3.33 3.29 -67.60 -0.22 3.11 16 3 H 0.07 1.28 7.93 -51.93 -0.41 0.87 16 4 C -0.13 -2.10 5.02 -26.61 -0.13 -2.23 16 5 C 0.15 2.44 2.21 -67.89 -0.15 2.29 16 6 H 0.09 1.65 5.92 -51.93 -0.31 1.34 16 7 N -0.71 -9.44 5.03 -54.80 -0.28 -9.71 16 8 C 0.56 8.02 7.70 -12.46 -0.10 7.93 16 9 O -0.53 -9.35 13.14 5.29 0.07 -9.28 16 10 C -0.09 -1.13 5.90 -104.67 -0.62 -1.74 16 11 C -0.08 -0.72 9.51 -39.13 -0.37 -1.10 16 12 C -0.11 -0.76 9.93 -39.98 -0.40 -1.15 16 13 C -0.09 -0.70 9.79 -39.47 -0.39 -1.09 16 14 C -0.03 -0.31 5.74 -106.84 -0.61 -0.93 16 15 C -0.17 -1.53 9.88 -39.37 -0.39 -1.92 16 16 C 0.08 0.84 11.07 -17.97 -0.20 0.64 16 17 N -0.49 -6.83 10.30 -13.21 -0.14 -6.97 16 18 C 0.15 2.15 10.49 -17.06 -0.18 1.97 16 19 C -0.08 -1.04 5.76 -106.59 -0.61 -1.66 16 20 C -0.15 -2.85 5.65 -26.61 -0.15 -3.00 16 21 C 0.17 4.11 4.84 -3.71 -0.02 4.09 16 22 N -0.59 -13.94 2.70 -164.78 -0.44 -14.38 16 23 C -0.25 -6.71 9.59 -15.06 -0.14 -6.85 16 24 H 0.06 1.66 7.85 -52.49 -0.41 1.25 16 25 C 0.01 0.15 5.07 -17.43 -0.09 0.06 16 26 N -0.90 -25.78 11.00 55.49 0.61 -25.17 16 27 Si 0.90 21.36 29.56 -169.99 -5.03 16.34 16 28 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 29 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 30 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 31 H 0.05 0.98 5.72 -51.93 -0.30 0.68 16 32 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 34 H 0.06 0.97 8.14 -51.92 -0.42 0.55 16 35 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.39 3.98 6.67 -40.82 -0.27 3.71 16 37 H 0.13 0.83 6.42 -52.49 -0.34 0.49 16 38 H 0.13 0.56 8.06 -52.49 -0.42 0.14 16 39 H 0.13 0.64 8.06 -52.49 -0.42 0.22 16 40 H 0.14 0.80 8.06 -52.49 -0.42 0.37 16 41 H 0.15 1.16 8.06 -52.49 -0.42 0.74 16 42 H 0.20 3.20 4.98 -52.49 -0.26 2.93 16 43 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 44 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 45 H 0.02 0.55 7.50 -51.93 -0.39 0.16 16 46 H 0.09 2.45 6.07 -51.93 -0.32 2.13 16 47 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 LS Contribution 371.96 15.07 5.61 5.61 Total: -1.00 -31.69 371.96 -10.40 -42.09 By element: Atomic # 1 Polarization: 12.14 SS G_CDS: -6.37 Total: 5.77 kcal Atomic # 6 Polarization: 0.14 SS G_CDS: -4.44 Total: -4.30 kcal Atomic # 7 Polarization: -55.98 SS G_CDS: -0.25 Total: -56.23 kcal Atomic # 8 Polarization: -9.35 SS G_CDS: 0.07 Total: -9.28 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.03 Total: 16.34 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -31.69 -10.40 -42.09 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947877776.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.537 kcal (2) G-P(sol) polarization free energy of solvation -31.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.093 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds