Wall clock time and date at job start Tue Mar 31 2020 22:17:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.70540 * 2 1 4 4 C 1.53192 * 109.58316 * 120.35592 * 2 1 3 5 5 C 1.53035 * 109.31596 * 65.15073 * 4 2 1 6 6 H 1.09002 * 109.45675 * 301.34280 * 5 4 2 7 7 N 1.46498 * 109.46103 * 181.38490 * 5 4 2 8 8 C 1.34782 * 119.99985 * 154.99901 * 7 5 4 9 9 O 1.21585 * 119.99807 * 359.97438 * 8 7 5 10 10 C 1.47562 * 119.99925 * 180.02562 * 8 7 5 11 11 C 1.38703 * 120.43542 * 5.82386 * 10 8 7 12 12 C 1.38999 * 120.75467 * 179.97438 * 11 10 8 13 13 C 1.36349 * 121.18855 * 0.02562 * 12 11 10 14 14 C 1.40351 * 119.92901 * 359.97438 * 13 12 11 15 15 C 1.40679 * 122.09896 * 179.97438 * 14 13 12 16 16 C 1.36263 * 118.66416 * 180.02562 * 15 14 13 17 17 N 1.32508 * 121.84290 * 359.97438 * 16 15 14 18 18 C 1.31315 * 122.71848 * 0.02562 * 17 16 15 19 19 C 1.40138 * 119.91882 * 359.74094 * 18 17 16 20 20 C 1.53037 * 109.53753 * 61.36543 * 5 4 2 21 21 C 1.53197 * 109.31390 * 298.63261 * 20 5 4 22 22 N 1.46922 * 109.58534 * 239.63878 * 2 1 3 23 23 C 1.36948 * 120.62847 * 113.80118 * 22 2 1 24 24 H 1.07998 * 119.99277 * 31.29186 * 23 22 2 25 25 C 1.38808 * 120.00127 * 211.28929 * 23 22 2 26 26 N 1.31623 * 119.99673 * 9.92318 * 25 23 22 27 27 Si 1.86797 * 119.99938 * 189.92350 * 25 23 22 28 28 H 1.48502 * 109.47237 * 90.00163 * 27 25 23 29 29 H 1.48500 * 109.47038 * 210.00305 * 27 25 23 30 30 H 1.48496 * 109.47130 * 329.99869 * 27 25 23 31 31 H 1.08994 * 109.47826 * 180.35630 * 1 2 3 32 32 H 1.09001 * 109.47262 * 300.35972 * 1 2 3 33 33 H 1.09005 * 109.46850 * 60.35578 * 1 2 3 34 34 H 1.09008 * 109.49610 * 185.10438 * 4 2 1 35 35 H 1.09006 * 109.49948 * 305.16362 * 4 2 1 36 36 H 0.96996 * 120.00000 * 334.99713 * 7 5 4 37 37 H 1.07997 * 119.62509 * 359.97438 * 11 10 8 38 38 H 1.08002 * 119.40725 * 180.02562 * 12 11 10 39 39 H 1.08002 * 120.03254 * 179.97438 * 13 12 11 40 40 H 1.07998 * 120.67484 * 0.02562 * 15 14 13 41 41 H 1.08001 * 119.08173 * 180.02562 * 16 15 14 42 42 H 1.08004 * 120.04506 * 179.97438 * 18 17 16 43 43 H 1.08999 * 109.50005 * 178.68672 * 20 5 4 44 44 H 1.08990 * 109.50108 * 58.58410 * 20 5 4 45 45 H 1.08999 * 109.58611 * 294.85544 * 21 20 5 46 46 H 1.08999 * 109.59023 * 174.41973 * 21 20 5 47 47 H 0.97008 * 119.99275 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0435 -0.7294 1.2454 5 6 1.6413 -2.2041 1.1702 6 1 0.5564 -2.2814 1.0994 7 7 2.1022 -2.8977 2.3755 8 6 1.4748 -4.0159 2.7909 9 8 0.5261 -4.4487 2.1656 10 6 1.9386 -4.7143 4.0053 11 6 2.9396 -4.1649 4.7927 12 6 3.3812 -4.8168 5.9382 13 6 2.8469 -6.0113 6.3212 14 6 1.8318 -6.6027 5.5533 15 6 1.2488 -7.8336 5.9057 16 6 0.2683 -8.3443 5.1091 17 7 -0.1462 -7.7143 4.0196 18 6 0.3532 -6.5634 3.6318 19 6 1.3637 -5.9506 4.3850 20 6 2.2799 -2.8464 -0.0633 21 6 1.7691 -2.1411 -1.3237 22 7 2.0225 -0.6997 -1.1944 23 6 2.7044 -0.0210 -2.1690 24 1 3.3163 0.8295 -1.9072 25 6 2.6092 -0.4263 -3.4932 26 7 1.7195 -1.3315 -3.8419 27 14 3.7436 0.3128 -4.7801 28 1 4.9797 -0.5043 -4.8783 29 1 3.0552 0.3294 -6.0958 30 1 4.0976 1.7010 -4.3892 31 1 -0.3634 -1.0275 0.0064 32 1 -0.3634 0.5194 0.8867 33 1 -0.3633 0.5083 -0.8932 34 1 3.1297 -0.6504 1.2914 35 1 1.6079 -0.2780 2.1369 36 1 2.8588 -2.5523 2.8745 37 1 3.3810 -3.2199 4.5126 38 1 4.1616 -4.3691 6.5356 39 1 3.2044 -6.5017 7.2146 40 1 1.5717 -8.3632 6.7898 41 1 -0.1842 -9.2886 5.3736 42 1 -0.0169 -6.0877 2.7356 43 1 2.0121 -3.9022 -0.1036 44 1 3.3638 -2.7475 -0.0051 45 1 0.6986 -2.3156 -1.4316 46 1 2.2944 -2.5276 -2.1971 47 1 1.6533 -1.6150 -4.7672 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000947877776.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:17:30 Heat of formation + Delta-G solvation = 23.713479 kcal Electronic energy + Delta-G solvation = -29114.723636 eV Core-core repulsion = 25261.984158 eV Total energy + Delta-G solvation = -3852.739478 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.12449 -40.80097 -39.31149 -38.17817 -36.12259 -34.41652 -33.92645 -32.51635 -32.17368 -31.58416 -30.36464 -28.50605 -26.33116 -25.64325 -24.60869 -24.43816 -23.62751 -22.95096 -21.69680 -20.15107 -19.15895 -18.85144 -18.41332 -17.81089 -17.31335 -16.97904 -16.69161 -16.18150 -16.06736 -15.64746 -15.49246 -15.38783 -15.07603 -14.84791 -14.62275 -14.41908 -14.24978 -14.10492 -13.87245 -13.69338 -13.11608 -13.07409 -12.99590 -12.85545 -12.69037 -12.56588 -12.53030 -12.27755 -12.03911 -11.96991 -11.74495 -11.50908 -11.18565 -11.13453 -10.82728 -10.55820 -10.38370 -10.17154 -10.07540 -9.09170 -8.61789 -7.83301 -5.34748 -0.90939 -0.11656 0.58133 1.48252 1.48566 1.57755 1.73084 2.04220 2.23669 2.52073 3.08409 3.32903 3.46517 3.54612 3.65350 3.70566 3.76166 3.84651 3.88077 3.96168 4.10048 4.20265 4.30550 4.40145 4.46248 4.53527 4.59571 4.70255 4.72438 4.77243 4.80808 4.86060 4.89051 4.91353 5.06940 5.09910 5.16388 5.18193 5.20843 5.34990 5.35455 5.46947 5.50431 5.58401 5.68123 5.69612 5.79649 5.79939 6.44828 6.51364 7.00852 7.18439 7.20361 7.88867 8.42042 9.22379 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.020414 B = 0.002497 C = 0.002417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1371.300995 B =11208.784871 C =11579.890813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.161 3.839 3 H 0.072 0.928 4 C -0.118 4.118 5 C 0.161 3.839 6 H 0.065 0.935 7 N -0.699 5.699 8 C 0.552 3.448 9 O -0.573 6.573 10 C -0.132 4.132 11 C -0.057 4.057 12 C -0.106 4.106 13 C -0.073 4.073 14 C -0.051 4.051 15 C -0.141 4.141 16 C 0.049 3.951 17 N -0.517 5.517 18 C 0.109 3.891 19 C -0.095 4.095 20 C -0.133 4.133 21 C 0.186 3.814 22 N -0.600 5.600 23 C -0.256 4.256 24 H 0.073 0.927 25 C -0.053 4.053 26 N -0.939 5.939 27 Si 0.968 3.032 28 H -0.287 1.287 29 H -0.300 1.300 30 H -0.265 1.265 31 H 0.033 0.967 32 H 0.075 0.925 33 H 0.027 0.973 34 H 0.077 0.923 35 H 0.094 0.906 36 H 0.414 0.586 37 H 0.162 0.838 38 H 0.178 0.822 39 H 0.175 0.825 40 H 0.181 0.819 41 H 0.177 0.823 42 H 0.171 0.829 43 H 0.040 0.960 44 H 0.061 0.939 45 H -0.011 1.011 46 H 0.054 0.946 47 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.273 -7.170 27.578 29.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.054 3.946 3 H 0.090 0.910 4 C -0.157 4.157 5 C 0.057 3.943 6 H 0.083 0.917 7 N -0.350 5.350 8 C 0.341 3.659 9 O -0.455 6.455 10 C -0.137 4.137 11 C -0.076 4.076 12 C -0.125 4.125 13 C -0.091 4.091 14 C -0.057 4.057 15 C -0.161 4.161 16 C -0.094 4.094 17 N -0.226 5.226 18 C -0.060 4.060 19 C -0.098 4.098 20 C -0.173 4.173 21 C 0.059 3.941 22 N -0.322 5.322 23 C -0.386 4.386 24 H 0.090 0.910 25 C -0.248 4.248 26 N -0.585 5.585 27 Si 0.796 3.204 28 H -0.214 1.214 29 H -0.227 1.227 30 H -0.189 1.189 31 H 0.052 0.948 32 H 0.093 0.907 33 H 0.046 0.954 34 H 0.095 0.905 35 H 0.112 0.888 36 H 0.252 0.748 37 H 0.179 0.821 38 H 0.195 0.805 39 H 0.193 0.807 40 H 0.199 0.801 41 H 0.194 0.806 42 H 0.187 0.813 43 H 0.059 0.941 44 H 0.079 0.921 45 H 0.007 0.993 46 H 0.072 0.928 47 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 4.925 -7.981 26.560 28.167 hybrid contribution 0.742 0.493 -1.161 1.463 sum 5.666 -7.488 25.399 27.080 Atomic orbital electron populations 1.22193 0.98346 1.00234 1.00532 1.20717 0.92076 0.95577 0.86267 0.90984 1.22146 1.02082 0.92486 0.98990 1.20778 0.98473 0.92200 0.82867 0.91679 1.45925 1.34809 1.26186 1.28061 1.18577 0.82248 0.80663 0.84392 1.90594 1.30133 1.66025 1.58750 1.19799 1.01029 0.96030 0.96813 1.21894 0.92306 0.99995 0.93385 1.21408 1.00325 0.94892 0.95877 1.21658 0.92832 0.95361 0.99229 1.18559 0.97473 0.95639 0.94017 1.22335 0.96874 0.94920 1.01924 1.22821 0.95694 1.00491 0.90423 1.67560 1.28431 1.09531 1.17061 1.24268 0.91979 0.90414 0.99367 1.18988 0.98282 0.95580 0.96929 1.22345 1.00334 0.98206 0.96454 1.20410 0.95353 0.83797 0.94495 1.44334 1.64029 1.03536 1.20316 1.19545 1.20164 1.12253 0.86669 0.90965 1.25949 0.99315 1.00196 0.99329 1.70168 1.36411 1.35190 1.16698 0.85256 0.78079 0.78752 0.78273 1.21355 1.22673 1.18905 0.94818 0.90665 0.95371 0.90483 0.88807 0.74756 0.82098 0.80508 0.80736 0.80135 0.80621 0.81262 0.94076 0.92053 0.99312 0.92791 0.94373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.79 9.03 71.98 0.65 -5.14 16 2 C 0.16 6.14 3.29 44.98 0.15 6.29 16 3 H 0.07 2.67 7.93 -2.39 -0.02 2.65 16 4 C -0.12 -3.41 5.02 30.67 0.15 -3.26 16 5 C 0.16 5.29 2.21 45.02 0.10 5.39 16 6 H 0.07 2.51 5.92 -2.39 -0.01 2.49 16 7 N -0.70 -17.67 5.03 -445.55 -2.24 -19.91 16 8 C 0.55 16.34 7.70 86.70 0.67 17.01 16 9 O -0.57 -22.15 13.14 -3.98 -0.05 -22.20 16 10 C -0.13 -3.07 5.90 -19.89 -0.12 -3.18 16 11 C -0.06 -0.76 9.51 22.56 0.21 -0.55 16 12 C -0.11 -0.89 9.93 22.01 0.22 -0.67 16 13 C -0.07 -0.73 9.79 22.34 0.22 -0.51 16 14 C -0.05 -0.94 5.74 -21.30 -0.12 -1.07 16 15 C -0.14 -2.19 9.88 22.41 0.22 -1.97 16 16 C 0.05 1.02 11.07 84.13 0.93 1.96 16 17 N -0.52 -15.44 10.30 -195.72 -2.02 -17.46 16 18 C 0.11 3.46 10.49 85.23 0.89 4.35 16 19 C -0.09 -2.46 5.76 -21.14 -0.12 -2.59 16 20 C -0.13 -5.33 5.65 30.67 0.17 -5.16 16 21 C 0.19 9.33 4.84 86.36 0.42 9.74 16 22 N -0.60 -29.23 2.70 -675.23 -1.82 -31.05 16 23 C -0.26 -13.71 9.59 84.03 0.81 -12.91 16 24 H 0.07 3.69 7.85 -2.91 -0.02 3.67 16 25 C -0.05 -2.95 5.07 84.86 0.43 -2.52 16 26 N -0.94 -56.58 11.00 21.65 0.24 -56.34 16 27 Si 0.97 44.87 29.56 68.60 2.03 46.90 16 28 H -0.29 -13.11 7.11 99.48 0.71 -12.40 16 29 H -0.30 -14.22 7.11 99.48 0.71 -13.51 16 30 H -0.26 -11.50 7.11 99.48 0.71 -10.79 16 31 H 0.03 1.36 5.72 -2.39 -0.01 1.35 16 32 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 33 H 0.03 1.17 8.14 -2.38 -0.02 1.16 16 34 H 0.08 2.08 8.14 -2.38 -0.02 2.06 16 35 H 0.09 2.10 8.14 -2.38 -0.02 2.08 16 36 H 0.41 6.98 6.67 -92.71 -0.62 6.36 16 37 H 0.16 1.15 6.42 -2.91 -0.02 1.13 16 38 H 0.18 0.08 8.06 -2.91 -0.02 0.06 16 39 H 0.18 0.36 8.06 -2.91 -0.02 0.34 16 40 H 0.18 1.11 8.06 -2.91 -0.02 1.09 16 41 H 0.18 2.50 8.06 -2.91 -0.02 2.47 16 42 H 0.17 6.30 4.98 -2.93 -0.01 6.28 16 43 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 44 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 45 H -0.01 -0.62 7.50 -2.39 -0.02 -0.64 16 46 H 0.05 3.09 6.07 -2.39 -0.01 3.08 16 47 H 0.25 14.57 8.31 -92.70 -0.77 13.80 16 Total: -1.00 -78.29 371.96 2.41 -75.89 By element: Atomic # 1 Polarization: 18.58 SS G_CDS: 0.39 Total: 18.96 kcal Atomic # 6 Polarization: -0.68 SS G_CDS: 5.88 Total: 5.21 kcal Atomic # 7 Polarization: -118.92 SS G_CDS: -5.84 Total: -124.76 kcal Atomic # 8 Polarization: -22.15 SS G_CDS: -0.05 Total: -22.20 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 2.03 Total: 46.90 kcal Total: -78.29 2.41 -75.89 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947877776.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.601 kcal (2) G-P(sol) polarization free energy of solvation -78.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.888 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds