Wall clock time and date at job start Tue Mar 31 2020 22:17:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08997 * 109.70146 * 2 1 4 4 C 1.53188 * 109.58664 * 239.63742 * 2 1 3 5 5 C 1.53042 * 109.31655 * 294.84729 * 4 2 1 6 6 H 1.09007 * 109.45774 * 58.64082 * 5 4 2 7 7 N 1.46491 * 109.46313 * 178.61528 * 5 4 2 8 8 C 1.34782 * 120.00159 * 204.99898 * 7 5 4 9 9 O 1.21587 * 119.99635 * 0.02562 * 8 7 5 10 10 C 1.47558 * 119.99906 * 180.02562 * 8 7 5 11 11 C 1.38706 * 120.43733 * 5.83336 * 10 8 7 12 12 C 1.39006 * 120.75393 * 179.67746 * 11 10 8 13 13 C 1.36346 * 121.18729 * 0.65775 * 12 11 10 14 14 C 1.40350 * 119.93005 * 359.64701 * 13 12 11 15 15 C 1.40678 * 122.10372 * 180.02562 * 14 13 12 16 16 C 1.36255 * 118.67173 * 179.97438 * 15 14 13 17 17 N 1.32513 * 121.83866 * 359.97438 * 16 15 14 18 18 C 1.31318 * 122.71893 * 359.97438 * 17 16 15 19 19 C 1.40133 * 119.91894 * 0.02562 * 18 17 16 20 20 C 1.53041 * 109.53705 * 298.64060 * 5 4 2 21 21 C 1.52763 * 109.38862 * 61.23568 * 20 5 4 22 22 N 1.46924 * 109.00561 * 305.59174 * 21 20 5 23 23 C 1.36937 * 120.62687 * 233.58017 * 22 21 20 24 24 H 1.08006 * 119.99991 * 148.65389 * 23 22 21 25 25 C 1.38808 * 120.00033 * 328.65383 * 23 22 21 26 26 N 1.31620 * 120.00295 * 350.18629 * 25 23 22 27 27 Si 1.86808 * 119.99806 * 170.17902 * 25 23 22 28 28 H 1.48495 * 109.47170 * 270.00178 * 27 25 23 29 29 H 1.48502 * 109.47168 * 30.00733 * 27 25 23 30 30 H 1.48506 * 109.46762 * 150.00242 * 27 25 23 31 31 H 1.08995 * 109.47956 * 299.65356 * 1 2 3 32 32 H 1.09007 * 109.47045 * 59.65063 * 1 2 3 33 33 H 1.09006 * 109.47589 * 179.65136 * 1 2 3 34 34 H 1.08992 * 109.49733 * 54.80379 * 4 2 1 35 35 H 1.09003 * 109.49238 * 174.89964 * 4 2 1 36 36 H 0.97000 * 119.99846 * 25.00532 * 7 5 4 37 37 H 1.07997 * 119.62554 * 0.02562 * 11 10 8 38 38 H 1.08003 * 119.40329 * 180.30867 * 12 11 10 39 39 H 1.07999 * 120.03017 * 179.68020 * 13 12 11 40 40 H 1.08001 * 120.66585 * 359.95912 * 15 14 13 41 41 H 1.08006 * 119.08620 * 180.02562 * 16 15 14 42 42 H 1.08005 * 120.03610 * 179.97438 * 18 17 16 43 43 H 1.09000 * 109.49870 * 181.31551 * 20 5 4 44 44 H 1.08999 * 109.50140 * 301.40927 * 20 5 4 45 45 H 1.08994 * 109.51199 * 185.70862 * 21 20 5 46 46 H 1.09006 * 109.42898 * 65.41984 * 21 20 5 47 47 H 0.96996 * 119.99896 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8974 1.0262 0.0000 4 6 2.0435 -0.7295 -1.2453 5 6 1.6414 -2.2042 -1.1699 6 1 0.5564 -2.2816 -1.0988 7 7 2.1023 -2.8980 -2.3750 8 6 1.4750 -4.0164 -2.7903 9 8 0.5263 -4.4491 -2.1649 10 6 1.9397 -4.7155 -4.0038 11 6 3.0918 -4.3013 -4.6557 12 6 3.5392 -4.9593 -5.7956 13 6 2.8551 -6.0189 -6.3134 14 6 1.6808 -6.4671 -5.6889 15 6 0.9397 -7.5558 -6.1834 16 6 -0.1900 -7.9322 -5.5212 17 7 -0.6039 -7.3028 -4.4310 18 6 0.0388 -6.2809 -3.9143 19 6 1.2133 -5.8149 -4.5203 20 6 2.2799 -2.8464 0.0638 21 6 1.7739 -2.1420 1.3214 22 7 2.0224 -0.6995 1.1946 23 6 2.7050 -0.0209 2.1686 24 1 3.3145 0.8315 1.9069 25 6 2.6136 -0.4284 3.4924 26 7 1.7282 -1.3376 3.8415 27 14 3.7474 0.3133 4.7784 28 1 4.9868 -0.4991 4.8734 29 1 4.0953 1.7035 4.3890 30 1 3.0612 0.3253 6.0954 31 1 -0.3635 0.5084 0.8930 32 1 -0.3633 0.5193 -0.8869 33 1 -0.3634 -1.0277 -0.0063 34 1 1.6075 -0.2787 -2.1367 35 1 3.1297 -0.6505 -1.2911 36 1 2.8590 -2.5526 -2.8740 37 1 3.6508 -3.4616 -4.2701 38 1 4.4419 -4.6214 -6.2829 39 1 3.2168 -6.5132 -7.2029 40 1 1.2597 -8.0825 -7.0703 41 1 -0.7639 -8.7675 -5.8948 42 1 -0.3379 -5.7995 -3.0239 43 1 2.0122 -3.9022 0.1042 44 1 3.3639 -2.7475 0.0057 45 1 2.3023 -2.5286 2.1928 46 1 0.7042 -2.3202 1.4312 47 1 1.6646 -1.6226 4.7664 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000947877777.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:17:35 Heat of formation + Delta-G solvation = 43.414694 kcal Electronic energy + Delta-G solvation = -29106.926058 eV Core-core repulsion = 25255.040889 eV Total energy + Delta-G solvation = -3851.885169 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -41.27774 -39.65171 -37.87685 -37.35660 -34.66320 -33.22327 -32.54744 -31.43313 -31.00205 -30.13062 -29.16364 -26.94535 -25.04192 -24.34989 -23.73241 -23.44899 -21.93822 -21.60565 -20.58562 -18.70988 -18.08460 -17.86444 -16.98326 -16.82439 -16.19603 -15.92242 -15.21824 -15.06006 -14.91064 -14.56478 -14.18007 -13.93808 -13.84871 -13.74391 -13.55246 -13.05181 -12.97233 -12.65563 -12.52149 -12.34945 -12.30766 -12.21596 -11.86383 -11.39293 -11.02911 -10.94144 -10.83339 -10.63102 -10.42760 -10.34907 -10.17246 -10.07019 -9.83644 -9.76552 -9.52136 -9.43278 -9.34991 -8.82750 -8.45539 -8.32636 -6.64326 -5.78097 -3.26985 -0.14626 0.61207 1.41512 2.52017 3.12847 3.15813 3.36781 3.43273 3.44596 3.89744 4.23117 4.29254 4.40333 4.46911 4.50371 4.61395 4.65829 4.79297 5.01093 5.19476 5.33656 5.36318 5.41934 5.43702 5.45202 5.57313 5.65072 5.74368 5.80175 5.85816 5.99891 6.01779 6.04925 6.23483 6.26862 6.35591 6.39277 6.44686 6.56890 6.57914 6.65250 6.79218 6.85161 6.93866 7.15639 7.40450 7.55462 7.73782 7.79040 7.86551 8.23384 8.48097 9.22268 9.83460 10.41267 11.29488 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.021197 B = 0.002472 C = 0.002407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1320.612196 B =11322.184350 C =11631.526222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.171 3.829 3 H 0.066 0.934 4 C -0.133 4.133 5 C 0.148 3.852 6 H 0.089 0.911 7 N -0.713 5.713 8 C 0.555 3.445 9 O -0.529 6.529 10 C -0.093 4.093 11 C -0.083 4.083 12 C -0.106 4.106 13 C -0.091 4.091 14 C -0.030 4.030 15 C -0.166 4.166 16 C 0.079 3.921 17 N -0.490 5.490 18 C 0.148 3.852 19 C -0.081 4.081 20 C -0.148 4.148 21 C 0.174 3.826 22 N -0.585 5.585 23 C -0.254 4.254 24 H 0.064 0.936 25 C 0.006 3.994 26 N -0.902 5.902 27 Si 0.904 3.096 28 H -0.288 1.288 29 H -0.279 1.279 30 H -0.291 1.291 31 H 0.055 0.945 32 H 0.036 0.964 33 H 0.049 0.951 34 H 0.056 0.944 35 H 0.062 0.938 36 H 0.395 0.605 37 H 0.133 0.867 38 H 0.134 0.866 39 H 0.134 0.866 40 H 0.137 0.863 41 H 0.152 0.848 42 H 0.202 0.798 43 H 0.054 0.946 44 H 0.054 0.946 45 H 0.092 0.908 46 H 0.021 0.979 47 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.084 -8.010 -22.638 24.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.062 3.938 3 H 0.084 0.916 4 C -0.173 4.173 5 C 0.045 3.955 6 H 0.107 0.893 7 N -0.362 5.362 8 C 0.342 3.658 9 O -0.408 6.408 10 C -0.099 4.099 11 C -0.102 4.102 12 C -0.125 4.125 13 C -0.109 4.109 14 C -0.035 4.035 15 C -0.186 4.186 16 C -0.065 4.065 17 N -0.198 5.198 18 C -0.021 4.021 19 C -0.084 4.084 20 C -0.188 4.188 21 C 0.048 3.952 22 N -0.307 5.307 23 C -0.383 4.383 24 H 0.082 0.918 25 C -0.193 4.193 26 N -0.546 5.546 27 Si 0.734 3.266 28 H -0.215 1.215 29 H -0.205 1.205 30 H -0.217 1.217 31 H 0.074 0.926 32 H 0.055 0.945 33 H 0.068 0.932 34 H 0.075 0.925 35 H 0.081 0.919 36 H 0.229 0.771 37 H 0.151 0.849 38 H 0.152 0.848 39 H 0.152 0.848 40 H 0.155 0.845 41 H 0.169 0.831 42 H 0.218 0.782 43 H 0.072 0.928 44 H 0.073 0.927 45 H 0.110 0.890 46 H 0.039 0.961 47 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 1.589 -8.752 -21.668 23.423 hybrid contribution 1.853 0.684 -0.103 1.978 sum 3.442 -8.068 -21.771 23.472 Atomic orbital electron populations 1.22300 0.98630 1.01147 1.00094 1.20440 0.91831 0.95090 0.86426 0.91624 1.22317 1.01160 0.94040 0.99790 1.21213 1.00104 0.91349 0.82810 0.89271 1.46289 1.34254 1.26492 1.29162 1.18064 0.82987 0.80940 0.83808 1.90587 1.28028 1.65264 1.56928 1.20040 0.96574 0.96774 0.96468 1.21457 0.94868 0.99038 0.94820 1.20910 1.00094 0.95670 0.95830 1.21145 0.93696 0.96594 0.99476 1.18168 0.95461 0.95548 0.94335 1.21855 0.97107 0.97744 1.01913 1.22345 0.94230 0.98410 0.91498 1.67705 1.32713 1.08234 1.11175 1.24697 0.89059 0.90015 0.98360 1.18884 0.97365 0.96211 0.95915 1.22532 1.00141 0.99306 0.96829 1.20686 0.97872 0.82886 0.93778 1.44110 1.63787 1.03380 1.19399 1.19152 1.20640 1.12457 0.86082 0.91803 1.25177 0.97684 0.99286 0.97184 1.69965 1.34520 1.33116 1.16982 0.86275 0.80171 0.78932 0.81236 1.21487 1.20461 1.21702 0.92588 0.94514 0.93152 0.92537 0.91891 0.77077 0.84890 0.84794 0.84778 0.84491 0.83094 0.78195 0.92776 0.92736 0.89031 0.96052 0.93547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.04 9.03 37.15 0.34 -2.71 16 2 C 0.17 3.33 3.29 -67.60 -0.22 3.11 16 3 H 0.07 1.28 7.93 -51.93 -0.41 0.87 16 4 C -0.13 -2.10 5.02 -26.61 -0.13 -2.24 16 5 C 0.15 2.44 2.21 -67.89 -0.15 2.29 16 6 H 0.09 1.65 5.92 -51.92 -0.31 1.34 16 7 N -0.71 -9.43 5.03 -54.80 -0.28 -9.70 16 8 C 0.56 8.02 7.70 -12.46 -0.10 7.92 16 9 O -0.53 -9.34 13.14 5.29 0.07 -9.27 16 10 C -0.09 -1.13 5.90 -104.67 -0.62 -1.74 16 11 C -0.08 -0.73 9.51 -39.12 -0.37 -1.10 16 12 C -0.11 -0.76 9.93 -39.98 -0.40 -1.16 16 13 C -0.09 -0.70 9.79 -39.47 -0.39 -1.09 16 14 C -0.03 -0.31 5.74 -106.84 -0.61 -0.93 16 15 C -0.17 -1.52 9.88 -39.37 -0.39 -1.91 16 16 C 0.08 0.83 11.07 -17.97 -0.20 0.64 16 17 N -0.49 -6.79 10.30 -13.21 -0.14 -6.93 16 18 C 0.15 2.13 10.49 -17.06 -0.18 1.96 16 19 C -0.08 -1.04 5.76 -106.59 -0.61 -1.65 16 20 C -0.15 -2.84 5.63 -26.83 -0.15 -3.00 16 21 C 0.17 4.10 4.81 -3.93 -0.02 4.08 16 22 N -0.59 -13.93 2.70 -165.04 -0.45 -14.38 16 23 C -0.25 -6.70 9.59 -15.06 -0.14 -6.85 16 24 H 0.06 1.66 7.85 -52.48 -0.41 1.24 16 25 C 0.01 0.15 5.07 -17.43 -0.09 0.06 16 26 N -0.90 -25.78 11.00 55.49 0.61 -25.17 16 27 Si 0.90 21.35 29.57 -169.99 -5.03 16.32 16 28 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 29 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 30 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 31 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 32 H 0.04 0.57 8.14 -51.92 -0.42 0.15 16 33 H 0.05 0.98 5.74 -51.93 -0.30 0.68 16 34 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.39 3.98 6.67 -40.82 -0.27 3.71 16 37 H 0.13 0.85 6.42 -52.49 -0.34 0.51 16 38 H 0.13 0.57 8.06 -52.48 -0.42 0.14 16 39 H 0.13 0.64 8.06 -52.49 -0.42 0.22 16 40 H 0.14 0.79 8.06 -52.49 -0.42 0.37 16 41 H 0.15 1.15 8.06 -52.48 -0.42 0.72 16 42 H 0.20 3.17 4.98 -52.48 -0.26 2.91 16 43 H 0.05 1.06 8.14 -51.93 -0.42 0.63 16 44 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 45 H 0.09 2.44 6.07 -51.93 -0.32 2.13 16 46 H 0.02 0.54 7.52 -51.93 -0.39 0.15 16 47 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 LS Contribution 371.97 15.07 5.61 5.61 Total: -1.00 -31.69 371.97 -10.40 -42.09 By element: Atomic # 1 Polarization: 12.11 SS G_CDS: -6.37 Total: 5.74 kcal Atomic # 6 Polarization: 0.13 SS G_CDS: -4.44 Total: -4.31 kcal Atomic # 7 Polarization: -55.93 SS G_CDS: -0.25 Total: -56.18 kcal Atomic # 8 Polarization: -9.34 SS G_CDS: 0.07 Total: -9.27 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.03 Total: 16.32 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -31.69 -10.40 -42.09 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947877777.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.509 kcal (2) G-P(sol) polarization free energy of solvation -31.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.095 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds