Wall clock time and date at job start Tue Mar 31 2020 22:17:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08997 * 109.70146 * 2 1 4 4 C 1.53188 * 109.58664 * 239.63742 * 2 1 3 5 5 C 1.53042 * 109.31655 * 294.84729 * 4 2 1 6 6 H 1.09007 * 109.45774 * 58.64082 * 5 4 2 7 7 N 1.46491 * 109.46313 * 178.61528 * 5 4 2 8 8 C 1.34782 * 120.00159 * 204.99898 * 7 5 4 9 9 O 1.21587 * 119.99635 * 0.02562 * 8 7 5 10 10 C 1.47558 * 119.99906 * 180.02562 * 8 7 5 11 11 C 1.38706 * 120.43733 * 5.83336 * 10 8 7 12 12 C 1.39006 * 120.75393 * 179.67746 * 11 10 8 13 13 C 1.36346 * 121.18729 * 0.65775 * 12 11 10 14 14 C 1.40350 * 119.93005 * 359.64701 * 13 12 11 15 15 C 1.40678 * 122.10372 * 180.02562 * 14 13 12 16 16 C 1.36255 * 118.67173 * 179.97438 * 15 14 13 17 17 N 1.32513 * 121.83866 * 359.97438 * 16 15 14 18 18 C 1.31318 * 122.71893 * 359.97438 * 17 16 15 19 19 C 1.40133 * 119.91894 * 0.02562 * 18 17 16 20 20 C 1.53041 * 109.53705 * 298.64060 * 5 4 2 21 21 C 1.52763 * 109.38862 * 61.23568 * 20 5 4 22 22 N 1.46924 * 109.00561 * 305.59174 * 21 20 5 23 23 C 1.36937 * 120.62687 * 233.58017 * 22 21 20 24 24 H 1.08006 * 119.99991 * 148.65389 * 23 22 21 25 25 C 1.38808 * 120.00033 * 328.65383 * 23 22 21 26 26 N 1.31620 * 120.00295 * 350.18629 * 25 23 22 27 27 Si 1.86808 * 119.99806 * 170.17902 * 25 23 22 28 28 H 1.48495 * 109.47170 * 270.00178 * 27 25 23 29 29 H 1.48502 * 109.47168 * 30.00733 * 27 25 23 30 30 H 1.48506 * 109.46762 * 150.00242 * 27 25 23 31 31 H 1.08995 * 109.47956 * 299.65356 * 1 2 3 32 32 H 1.09007 * 109.47045 * 59.65063 * 1 2 3 33 33 H 1.09006 * 109.47589 * 179.65136 * 1 2 3 34 34 H 1.08992 * 109.49733 * 54.80379 * 4 2 1 35 35 H 1.09003 * 109.49238 * 174.89964 * 4 2 1 36 36 H 0.97000 * 119.99846 * 25.00532 * 7 5 4 37 37 H 1.07997 * 119.62554 * 0.02562 * 11 10 8 38 38 H 1.08003 * 119.40329 * 180.30867 * 12 11 10 39 39 H 1.07999 * 120.03017 * 179.68020 * 13 12 11 40 40 H 1.08001 * 120.66585 * 359.95912 * 15 14 13 41 41 H 1.08006 * 119.08620 * 180.02562 * 16 15 14 42 42 H 1.08005 * 120.03610 * 179.97438 * 18 17 16 43 43 H 1.09000 * 109.49870 * 181.31551 * 20 5 4 44 44 H 1.08999 * 109.50140 * 301.40927 * 20 5 4 45 45 H 1.08994 * 109.51199 * 185.70862 * 21 20 5 46 46 H 1.09006 * 109.42898 * 65.41984 * 21 20 5 47 47 H 0.96996 * 119.99896 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8974 1.0262 0.0000 4 6 2.0435 -0.7295 -1.2453 5 6 1.6414 -2.2042 -1.1699 6 1 0.5564 -2.2816 -1.0988 7 7 2.1023 -2.8980 -2.3750 8 6 1.4750 -4.0164 -2.7903 9 8 0.5263 -4.4491 -2.1649 10 6 1.9397 -4.7155 -4.0038 11 6 3.0918 -4.3013 -4.6557 12 6 3.5392 -4.9593 -5.7956 13 6 2.8551 -6.0189 -6.3134 14 6 1.6808 -6.4671 -5.6889 15 6 0.9397 -7.5558 -6.1834 16 6 -0.1900 -7.9322 -5.5212 17 7 -0.6039 -7.3028 -4.4310 18 6 0.0388 -6.2809 -3.9143 19 6 1.2133 -5.8149 -4.5203 20 6 2.2799 -2.8464 0.0638 21 6 1.7739 -2.1420 1.3214 22 7 2.0224 -0.6995 1.1946 23 6 2.7050 -0.0209 2.1686 24 1 3.3145 0.8315 1.9069 25 6 2.6136 -0.4284 3.4924 26 7 1.7282 -1.3376 3.8415 27 14 3.7474 0.3133 4.7784 28 1 4.9868 -0.4991 4.8734 29 1 4.0953 1.7035 4.3890 30 1 3.0612 0.3253 6.0954 31 1 -0.3635 0.5084 0.8930 32 1 -0.3633 0.5193 -0.8869 33 1 -0.3634 -1.0277 -0.0063 34 1 1.6075 -0.2787 -2.1367 35 1 3.1297 -0.6505 -1.2911 36 1 2.8590 -2.5526 -2.8740 37 1 3.6508 -3.4616 -4.2701 38 1 4.4419 -4.6214 -6.2829 39 1 3.2168 -6.5132 -7.2029 40 1 1.2597 -8.0825 -7.0703 41 1 -0.7639 -8.7675 -5.8948 42 1 -0.3379 -5.7995 -3.0239 43 1 2.0122 -3.9022 0.1042 44 1 3.3639 -2.7475 0.0057 45 1 2.3023 -2.5286 2.1928 46 1 0.7042 -2.3202 1.4312 47 1 1.6646 -1.6226 4.7664 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000947877777.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:17:34 Heat of formation + Delta-G solvation = 23.724154 kcal Electronic energy + Delta-G solvation = -29107.779904 eV Core-core repulsion = 25255.040889 eV Total energy + Delta-G solvation = -3852.739015 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -42.12489 -40.80505 -39.31917 -38.17809 -36.12254 -34.41747 -33.92771 -32.53970 -32.17420 -31.58496 -30.36899 -28.51056 -26.33212 -25.64288 -24.61010 -24.43813 -23.62142 -22.95603 -21.69493 -20.15149 -19.16077 -18.85233 -18.41285 -17.79802 -17.32474 -16.99455 -16.69065 -16.15519 -16.07188 -15.65909 -15.49683 -15.38970 -15.08353 -14.83209 -14.63114 -14.40876 -14.27891 -14.10887 -13.86080 -13.68703 -13.11636 -13.07683 -12.99725 -12.85809 -12.69076 -12.56910 -12.52841 -12.27258 -12.04625 -11.96938 -11.74528 -11.50830 -11.19701 -11.12519 -10.83105 -10.55777 -10.38848 -10.17191 -10.06827 -9.09215 -8.61786 -7.83214 -5.34608 -0.90984 -0.11734 0.58174 1.48401 1.48636 1.57864 1.73266 2.04422 2.22951 2.52109 3.08359 3.33041 3.46458 3.54616 3.65146 3.70461 3.76154 3.84647 3.87898 3.96104 4.09721 4.20142 4.30321 4.40158 4.46257 4.53299 4.59423 4.70411 4.72396 4.77894 4.80858 4.86134 4.88954 4.91281 5.06888 5.09696 5.16406 5.18199 5.20814 5.34919 5.35187 5.47098 5.50292 5.58447 5.68080 5.69595 5.79629 5.79927 6.44821 6.51201 7.00871 7.18571 7.20224 7.88932 8.42112 9.22612 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.021197 B = 0.002472 C = 0.002407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1320.612196 B =11322.184350 C =11631.526222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.161 3.839 3 H 0.072 0.928 4 C -0.118 4.118 5 C 0.161 3.839 6 H 0.065 0.935 7 N -0.699 5.699 8 C 0.552 3.448 9 O -0.573 6.573 10 C -0.131 4.131 11 C -0.057 4.057 12 C -0.106 4.106 13 C -0.073 4.073 14 C -0.051 4.051 15 C -0.141 4.141 16 C 0.049 3.951 17 N -0.517 5.517 18 C 0.109 3.891 19 C -0.095 4.095 20 C -0.133 4.133 21 C 0.186 3.814 22 N -0.600 5.600 23 C -0.256 4.256 24 H 0.073 0.927 25 C -0.053 4.053 26 N -0.939 5.939 27 Si 0.968 3.032 28 H -0.286 1.286 29 H -0.265 1.265 30 H -0.300 1.300 31 H 0.027 0.973 32 H 0.074 0.926 33 H 0.033 0.967 34 H 0.092 0.908 35 H 0.077 0.923 36 H 0.414 0.586 37 H 0.160 0.840 38 H 0.177 0.823 39 H 0.175 0.825 40 H 0.181 0.819 41 H 0.177 0.823 42 H 0.171 0.829 43 H 0.041 0.959 44 H 0.061 0.939 45 H 0.054 0.946 46 H -0.012 1.012 47 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.448 -7.380 -27.377 29.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.054 3.946 3 H 0.090 0.910 4 C -0.157 4.157 5 C 0.057 3.943 6 H 0.083 0.917 7 N -0.350 5.350 8 C 0.341 3.659 9 O -0.455 6.455 10 C -0.136 4.136 11 C -0.076 4.076 12 C -0.125 4.125 13 C -0.091 4.091 14 C -0.057 4.057 15 C -0.161 4.161 16 C -0.094 4.094 17 N -0.225 5.225 18 C -0.060 4.060 19 C -0.098 4.098 20 C -0.173 4.173 21 C 0.059 3.941 22 N -0.322 5.322 23 C -0.386 4.386 24 H 0.090 0.910 25 C -0.248 4.248 26 N -0.585 5.585 27 Si 0.796 3.204 28 H -0.213 1.213 29 H -0.189 1.189 30 H -0.227 1.227 31 H 0.047 0.953 32 H 0.093 0.907 33 H 0.052 0.948 34 H 0.111 0.889 35 H 0.096 0.904 36 H 0.252 0.748 37 H 0.178 0.822 38 H 0.194 0.806 39 H 0.193 0.807 40 H 0.199 0.801 41 H 0.194 0.806 42 H 0.188 0.812 43 H 0.060 0.940 44 H 0.080 0.920 45 H 0.072 0.928 46 H 0.006 0.994 47 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 4.983 -8.088 -26.461 28.115 hybrid contribution 0.825 0.438 1.217 1.534 sum 5.809 -7.651 -25.245 27.010 Atomic orbital electron populations 1.22192 0.98350 1.00234 1.00524 1.20713 0.92081 0.95579 0.86246 0.90991 1.22144 1.02095 0.92522 0.98961 1.20780 0.98475 0.92185 0.82893 0.91713 1.45923 1.34834 1.26143 1.28076 1.18575 0.82242 0.80709 0.84348 1.90595 1.30031 1.66365 1.58501 1.19796 0.98977 0.98076 0.96785 1.21890 0.92737 0.98749 0.94257 1.21404 1.01201 0.94988 0.94924 1.21654 0.91658 0.95991 0.99760 1.18558 0.97043 0.96139 0.93937 1.22332 0.95347 0.96384 1.01992 1.22821 0.95891 0.99445 0.91247 1.67565 1.33720 1.08489 1.12774 1.24270 0.91155 0.91616 0.98961 1.18984 0.96888 0.96867 0.97019 1.22271 1.00392 0.98232 0.96404 1.20320 0.95393 0.83798 0.94555 1.44315 1.64103 1.03455 1.20334 1.19542 1.20259 1.12115 0.86701 0.90970 1.25947 0.99347 1.00172 0.99308 1.70163 1.36614 1.34981 1.16718 0.85258 0.78088 0.78756 0.78266 1.21322 1.18920 1.22684 0.95344 0.90707 0.94815 0.88912 0.90441 0.74756 0.82209 0.80556 0.80736 0.80149 0.80605 0.81215 0.94007 0.91991 0.92769 0.99405 0.94369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.81 9.03 71.98 0.65 -5.16 16 2 C 0.16 6.15 3.29 44.97 0.15 6.30 16 3 H 0.07 2.67 7.93 -2.39 -0.02 2.65 16 4 C -0.12 -3.43 5.02 30.67 0.15 -3.28 16 5 C 0.16 5.29 2.21 45.02 0.10 5.38 16 6 H 0.06 2.50 5.92 -2.38 -0.01 2.48 16 7 N -0.70 -17.68 5.03 -445.55 -2.24 -19.92 16 8 C 0.55 16.34 7.70 86.70 0.67 17.01 16 9 O -0.57 -22.13 13.14 -3.99 -0.05 -22.19 16 10 C -0.13 -3.06 5.90 -19.89 -0.12 -3.18 16 11 C -0.06 -0.78 9.51 22.57 0.21 -0.57 16 12 C -0.11 -0.91 9.93 22.01 0.22 -0.69 16 13 C -0.07 -0.73 9.79 22.34 0.22 -0.51 16 14 C -0.05 -0.94 5.74 -21.30 -0.12 -1.06 16 15 C -0.14 -2.17 9.88 22.40 0.22 -1.95 16 16 C 0.05 1.02 11.07 84.13 0.93 1.95 16 17 N -0.52 -15.28 10.30 -195.72 -2.02 -17.29 16 18 C 0.11 3.44 10.49 85.23 0.89 4.33 16 19 C -0.09 -2.45 5.76 -21.14 -0.12 -2.57 16 20 C -0.13 -5.30 5.63 30.53 0.17 -5.12 16 21 C 0.19 9.30 4.81 86.22 0.42 9.72 16 22 N -0.60 -29.21 2.70 -676.06 -1.83 -31.03 16 23 C -0.26 -13.69 9.59 84.03 0.81 -12.89 16 24 H 0.07 3.69 7.85 -2.91 -0.02 3.66 16 25 C -0.05 -2.94 5.07 84.86 0.43 -2.51 16 26 N -0.94 -56.53 11.00 21.65 0.24 -56.30 16 27 Si 0.97 44.80 29.57 68.60 2.03 46.83 16 28 H -0.29 -13.06 7.11 99.48 0.71 -12.35 16 29 H -0.26 -11.50 7.11 99.48 0.71 -10.79 16 30 H -0.30 -14.21 7.11 99.48 0.71 -13.51 16 31 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 32 H 0.07 2.23 8.14 -2.38 -0.02 2.21 16 33 H 0.03 1.36 5.74 -2.38 -0.01 1.35 16 34 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16 35 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 36 H 0.41 7.00 6.67 -92.71 -0.62 6.38 16 37 H 0.16 1.21 6.42 -2.91 -0.02 1.19 16 38 H 0.18 0.12 8.06 -2.91 -0.02 0.10 16 39 H 0.18 0.37 8.06 -2.91 -0.02 0.34 16 40 H 0.18 1.09 8.06 -2.91 -0.02 1.07 16 41 H 0.18 2.46 8.06 -2.91 -0.02 2.44 16 42 H 0.17 6.25 4.98 -2.92 -0.01 6.23 16 43 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 44 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 45 H 0.05 3.10 6.07 -2.39 -0.01 3.08 16 46 H -0.01 -0.67 7.52 -2.38 -0.02 -0.69 16 47 H 0.25 14.56 8.31 -92.71 -0.77 13.79 16 Total: -1.00 -78.03 371.97 2.40 -75.64 By element: Atomic # 1 Polarization: 18.66 SS G_CDS: 0.39 Total: 19.04 kcal Atomic # 6 Polarization: -0.66 SS G_CDS: 5.88 Total: 5.22 kcal Atomic # 7 Polarization: -118.70 SS G_CDS: -5.84 Total: -124.54 kcal Atomic # 8 Polarization: -22.13 SS G_CDS: -0.05 Total: -22.19 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 2.03 Total: 46.83 kcal Total: -78.03 2.40 -75.64 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947877777.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.360 kcal (2) G-P(sol) polarization free energy of solvation -78.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.636 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds