Wall clock time and date at job start Tue Mar 31 2020 22:16:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.69768 * 2 1 4 4 C 1.53191 * 109.58641 * 239.64935 * 2 1 3 5 5 C 1.53046 * 109.33879 * 185.59220 * 4 2 1 6 6 H 1.09001 * 109.45719 * 301.33033 * 5 4 2 7 7 N 1.46494 * 109.46030 * 181.36720 * 5 4 2 8 8 C 1.34778 * 120.00201 * 154.99838 * 7 5 4 9 9 O 1.21550 * 119.99624 * 0.02562 * 8 7 5 10 10 C 1.47884 * 120.00508 * 180.02562 * 8 7 5 11 11 C 1.40600 * 119.72608 * 359.97438 * 10 8 7 12 12 C 1.35853 * 120.95444 * 179.97438 * 11 10 8 13 13 C 1.40492 * 119.87880 * 0.02562 * 12 11 10 14 14 C 1.40481 * 121.85041 * 180.02562 * 13 12 11 15 15 N 1.31211 * 119.94259 * 179.97438 * 14 13 12 16 16 C 1.32561 * 122.80669 * 359.97438 * 15 14 13 17 17 C 1.36220 * 121.84351 * 0.02562 * 16 15 14 18 18 C 1.40763 * 118.67387 * 359.95829 * 17 16 15 19 19 C 1.38523 * 119.73456 * 179.73384 * 10 8 7 20 20 C 1.53038 * 109.53632 * 61.34673 * 5 4 2 21 21 C 1.53191 * 109.31291 * 298.63263 * 20 5 4 22 22 N 1.46929 * 108.77642 * 54.64098 * 21 20 5 23 23 C 1.36933 * 120.63495 * 126.42991 * 22 21 20 24 24 H 1.08003 * 120.00098 * 209.00886 * 23 22 21 25 25 C 1.38814 * 120.00092 * 29.00384 * 23 22 21 26 26 N 1.31621 * 119.99524 * 15.02137 * 25 23 22 27 27 Si 1.86791 * 120.00198 * 195.01299 * 25 23 22 28 28 H 1.48501 * 109.47056 * 90.00332 * 27 25 23 29 29 H 1.48497 * 109.47387 * 210.00206 * 27 25 23 30 30 H 1.48494 * 109.47364 * 330.00365 * 27 25 23 31 31 H 1.08998 * 109.46924 * 180.35376 * 1 2 3 32 32 H 1.08998 * 109.47152 * 300.34878 * 1 2 3 33 33 H 1.08996 * 109.47326 * 60.35628 * 1 2 3 34 34 H 1.08998 * 109.49924 * 65.62655 * 4 2 1 35 35 H 1.08999 * 109.49902 * 305.55865 * 4 2 1 36 36 H 0.97005 * 120.00238 * 335.00396 * 7 5 4 37 37 H 1.08001 * 119.52676 * 0.02562 * 11 10 8 38 38 H 1.07998 * 120.06129 * 179.97438 * 12 11 10 39 39 H 1.07998 * 120.03179 * 359.95879 * 14 13 12 40 40 H 1.08002 * 119.07957 * 179.97438 * 16 15 14 41 41 H 1.08000 * 120.66341 * 179.97438 * 17 16 15 42 42 H 1.08004 * 120.36437 * 359.97168 * 19 10 8 43 43 H 1.08999 * 109.49774 * 58.58563 * 20 5 4 44 44 H 1.09001 * 109.49373 * 178.68782 * 20 5 4 45 45 H 1.09000 * 109.58688 * 174.42290 * 21 20 5 46 46 H 1.08991 * 109.59212 * 294.84802 * 21 20 5 47 47 H 0.97005 * 119.99466 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8974 1.0262 0.0000 4 6 2.0436 -0.7293 -1.2455 5 6 3.5676 -0.8485 -1.1706 6 1 4.0066 0.1466 -1.1000 7 7 4.0646 -1.5166 -2.3759 8 6 5.3288 -1.3036 -2.7918 9 8 6.0566 -0.5575 -2.1665 10 6 5.8304 -1.9776 -4.0088 11 6 4.9837 -2.8399 -4.7274 12 6 5.4185 -3.4714 -5.8489 13 6 6.7318 -3.2657 -6.3035 14 6 7.2241 -3.8969 -7.4579 15 7 8.4572 -3.6774 -7.8490 16 6 9.2845 -2.8718 -7.1981 17 6 8.9049 -2.2124 -6.0682 18 6 7.5954 -2.3970 -5.5861 19 6 7.1290 -1.7503 -4.4343 20 6 3.9569 -1.6663 0.0629 21 6 3.4658 -0.9471 1.3232 22 7 2.0233 -0.6992 1.1945 23 6 1.1547 -1.1115 2.1694 24 1 0.1367 -1.3656 1.9134 25 6 1.5826 -1.2030 3.4868 26 7 2.7063 -0.6252 3.8553 27 14 0.5635 -2.1458 4.7365 28 1 0.9966 -3.5661 4.7580 29 1 0.7553 -1.5494 6.0828 30 1 -0.8716 -2.0716 4.3622 31 1 -0.3633 -1.0276 0.0063 32 1 -0.3633 0.5192 0.8868 33 1 -0.3634 0.5083 -0.8931 34 1 1.7661 -0.1667 -2.1368 35 1 1.6026 -1.7250 -1.2918 36 1 3.4838 -2.1123 -2.8748 37 1 3.9729 -3.0019 -4.3834 38 1 4.7560 -4.1311 -6.3896 39 1 6.5883 -4.5625 -8.0229 40 1 10.2879 -2.7351 -7.5736 41 1 9.5949 -1.5608 -5.5527 42 1 7.7755 -1.0840 -3.8825 43 1 3.4979 -2.6532 0.0049 44 1 5.0412 -1.7706 0.1028 45 1 3.6526 -1.5719 2.1967 46 1 3.9915 0.0015 1.4310 47 1 3.0055 -0.6895 4.7758 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000947891315.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:16:46 Heat of formation + Delta-G solvation = 36.990950 kcal Electronic energy + Delta-G solvation = -28470.778479 eV Core-core repulsion = 24618.614756 eV Total energy + Delta-G solvation = -3852.163723 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.23795 -39.84393 -37.92692 -37.08107 -34.73084 -33.37594 -32.53752 -31.98072 -31.00297 -29.98907 -29.45108 -26.46671 -25.53959 -24.46688 -24.14396 -22.70762 -22.04377 -21.36678 -20.27875 -19.46836 -18.38118 -17.97592 -16.98072 -16.51961 -16.21429 -15.73866 -15.30161 -15.12297 -14.97021 -14.43350 -14.23637 -14.04021 -13.97745 -13.90886 -13.65905 -13.36451 -13.14905 -12.86585 -12.79981 -12.65934 -12.26816 -11.62895 -11.47978 -11.25261 -11.13111 -10.94337 -10.92592 -10.68979 -10.62619 -10.33333 -10.19404 -10.07873 -10.01768 -9.85175 -9.76401 -9.46964 -9.40600 -8.77750 -8.48298 -8.42977 -6.66512 -5.78016 -3.22362 -0.13067 0.32830 1.48701 2.27995 3.16168 3.22813 3.36986 3.43559 3.44892 3.74927 4.01315 4.13192 4.32071 4.37749 4.47800 4.53132 4.63232 4.79284 4.85716 5.18780 5.24216 5.29768 5.32561 5.36730 5.41289 5.54205 5.55248 5.64964 5.73717 5.88375 5.92456 5.97387 6.12337 6.19653 6.22215 6.28613 6.33449 6.37783 6.39815 6.47414 6.60802 6.76714 6.84163 7.00154 7.07106 7.36800 7.56812 7.58736 7.69072 7.81254 8.25274 8.45740 9.21260 9.84729 10.41448 11.30514 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.024895 B = 0.002133 C = 0.002089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1124.444486 B =13125.734417 C =13397.918039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.171 3.829 3 H 0.027 0.973 4 C -0.134 4.134 5 C 0.150 3.850 6 H 0.083 0.917 7 N -0.716 5.716 8 C 0.550 3.450 9 O -0.532 6.532 10 C -0.107 4.107 11 C -0.093 4.093 12 C -0.091 4.091 13 C -0.099 4.099 14 C 0.143 3.857 15 N -0.485 5.485 16 C 0.071 3.929 17 C -0.143 4.143 18 C -0.034 4.034 19 C -0.046 4.046 20 C -0.147 4.147 21 C 0.174 3.826 22 N -0.588 5.588 23 C -0.251 4.251 24 H 0.071 0.929 25 C 0.001 3.999 26 N -0.903 5.903 27 Si 0.902 3.098 28 H -0.288 1.288 29 H -0.292 1.292 30 H -0.279 1.279 31 H 0.053 0.947 32 H 0.062 0.938 33 H 0.038 0.962 34 H 0.055 0.945 35 H 0.064 0.936 36 H 0.394 0.606 37 H 0.132 0.868 38 H 0.140 0.860 39 H 0.165 0.835 40 H 0.155 0.845 41 H 0.142 0.858 42 H 0.147 0.853 43 H 0.055 0.945 44 H 0.053 0.947 45 H 0.091 0.909 46 H 0.020 0.980 47 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.558 -5.352 -22.326 23.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.064 3.936 3 H 0.045 0.955 4 C -0.174 4.174 5 C 0.047 3.953 6 H 0.101 0.899 7 N -0.366 5.366 8 C 0.336 3.664 9 O -0.410 6.410 10 C -0.112 4.112 11 C -0.112 4.112 12 C -0.111 4.111 13 C -0.102 4.102 14 C -0.029 4.029 15 N -0.193 5.193 16 C -0.072 4.072 17 C -0.163 4.163 18 C -0.039 4.039 19 C -0.065 4.065 20 C -0.187 4.187 21 C 0.048 3.952 22 N -0.311 5.311 23 C -0.380 4.380 24 H 0.088 0.912 25 C -0.197 4.197 26 N -0.547 5.547 27 Si 0.732 3.268 28 H -0.215 1.215 29 H -0.218 1.218 30 H -0.205 1.205 31 H 0.073 0.927 32 H 0.082 0.918 33 H 0.057 0.943 34 H 0.074 0.926 35 H 0.082 0.918 36 H 0.229 0.771 37 H 0.150 0.850 38 H 0.157 0.843 39 H 0.182 0.818 40 H 0.172 0.828 41 H 0.160 0.840 42 H 0.165 0.835 43 H 0.074 0.926 44 H 0.071 0.929 45 H 0.109 0.891 46 H 0.039 0.961 47 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 7.572 -5.122 -22.399 24.192 hybrid contribution -0.990 -0.389 1.266 1.653 sum 6.581 -5.511 -21.133 22.810 Atomic orbital electron populations 1.21790 0.95709 1.01450 1.00330 1.20358 0.93094 0.93592 0.86601 0.95521 1.22390 0.93537 1.01700 0.99784 1.21110 0.94369 0.96818 0.83001 0.89877 1.46273 1.12826 1.48353 1.29144 1.18220 0.82403 0.81654 0.84090 1.90799 1.56205 1.37216 1.56778 1.20178 0.95092 0.99314 0.96592 1.21019 0.99684 0.95582 0.94903 1.20879 0.94265 0.99493 0.96465 1.19159 0.95268 0.98545 0.97190 1.23251 0.91874 0.95608 0.92153 1.67391 1.04388 1.15463 1.32054 1.22206 0.99324 0.93171 0.92481 1.22024 0.95447 1.00945 0.97874 1.18159 0.94170 0.96418 0.95157 1.21465 0.94778 0.96566 0.93648 1.22581 0.99786 0.99592 0.96755 1.20764 0.83195 0.97347 0.93878 1.44177 1.03015 1.64906 1.19008 1.19179 0.94803 1.37823 0.86226 0.91176 1.25109 0.97853 0.99742 0.97014 1.70019 1.23288 1.44447 1.16941 0.86303 0.79803 0.79747 0.80970 1.21536 1.21814 1.20466 0.92747 0.91849 0.94292 0.92635 0.91763 0.77090 0.85009 0.84271 0.81770 0.82796 0.84032 0.83490 0.92629 0.92859 0.89084 0.96150 0.93637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.41 7.95 37.16 0.30 -2.12 16 2 C 0.17 3.39 3.50 -67.59 -0.24 3.15 16 3 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 4 C -0.13 -2.15 4.84 -26.61 -0.13 -2.28 16 5 C 0.15 2.53 2.42 -67.89 -0.16 2.37 16 6 H 0.08 1.59 7.58 -51.93 -0.39 1.20 16 7 N -0.72 -9.70 5.03 -54.70 -0.27 -9.98 16 8 C 0.55 8.07 7.73 -12.31 -0.10 7.97 16 9 O -0.53 -9.89 15.97 5.32 0.08 -9.80 16 10 C -0.11 -1.24 5.87 -104.95 -0.62 -1.85 16 11 C -0.09 -0.81 9.44 -39.55 -0.37 -1.18 16 12 C -0.09 -0.68 9.77 -39.59 -0.39 -1.06 16 13 C -0.10 -0.88 5.75 -106.78 -0.61 -1.50 16 14 C 0.14 1.15 11.04 -16.97 -0.19 0.97 16 15 N -0.49 -4.64 10.29 -13.15 -0.14 -4.78 16 16 C 0.07 0.59 11.07 -17.96 -0.20 0.39 16 17 C -0.14 -1.21 9.88 -39.35 -0.39 -1.59 16 18 C -0.03 -0.34 5.74 -106.83 -0.61 -0.95 16 19 C -0.05 -0.50 9.38 -38.78 -0.36 -0.87 16 20 C -0.15 -2.86 5.65 -26.61 -0.15 -3.02 16 21 C 0.17 4.16 5.29 -3.71 -0.02 4.14 16 22 N -0.59 -14.11 2.99 -164.77 -0.49 -14.61 16 23 C -0.25 -6.56 8.61 -15.06 -0.13 -6.69 16 24 H 0.07 1.78 6.20 -52.48 -0.33 1.46 16 25 C 0.00 0.04 4.96 -17.43 -0.09 -0.05 16 26 N -0.90 -25.97 11.14 55.49 0.62 -25.35 16 27 Si 0.90 21.38 29.58 -169.99 -5.03 16.35 16 28 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 29 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 30 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 31 H 0.05 0.97 7.41 -51.93 -0.38 0.59 16 32 H 0.06 1.24 7.66 -51.93 -0.40 0.84 16 33 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 35 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 36 H 0.39 4.09 6.58 -40.82 -0.27 3.82 16 37 H 0.13 0.85 6.34 -52.49 -0.33 0.51 16 38 H 0.14 0.59 8.06 -52.49 -0.42 0.16 16 39 H 0.17 0.80 8.06 -52.49 -0.42 0.37 16 40 H 0.15 0.88 8.06 -52.49 -0.42 0.46 16 41 H 0.14 0.88 8.06 -52.49 -0.42 0.46 16 42 H 0.15 1.63 7.62 -52.48 -0.40 1.23 16 43 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 44 H 0.05 1.06 8.14 -51.93 -0.42 0.63 16 45 H 0.09 2.44 6.06 -51.93 -0.31 2.12 16 46 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 47 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 LS Contribution 378.16 15.07 5.70 5.70 Total: -1.00 -32.60 378.16 -10.59 -43.19 By element: Atomic # 1 Polarization: 10.05 SS G_CDS: -6.60 Total: 3.45 kcal Atomic # 6 Polarization: 0.29 SS G_CDS: -4.46 Total: -4.17 kcal Atomic # 7 Polarization: -54.43 SS G_CDS: -0.29 Total: -54.71 kcal Atomic # 8 Polarization: -9.89 SS G_CDS: 0.08 Total: -9.80 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.03 Total: 16.35 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -32.60 -10.59 -43.19 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947891315.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.177 kcal (2) G-P(sol) polarization free energy of solvation -32.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.186 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds