Wall clock time and date at job start Tue Mar 31 2020 22:16:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.69768 * 2 1 4 4 C 1.53191 * 109.58641 * 239.64935 * 2 1 3 5 5 C 1.53046 * 109.33879 * 185.59220 * 4 2 1 6 6 H 1.09001 * 109.45719 * 301.33033 * 5 4 2 7 7 N 1.46494 * 109.46030 * 181.36720 * 5 4 2 8 8 C 1.34778 * 120.00201 * 154.99838 * 7 5 4 9 9 O 1.21550 * 119.99624 * 0.02562 * 8 7 5 10 10 C 1.47884 * 120.00508 * 180.02562 * 8 7 5 11 11 C 1.40600 * 119.72608 * 359.97438 * 10 8 7 12 12 C 1.35853 * 120.95444 * 179.97438 * 11 10 8 13 13 C 1.40492 * 119.87880 * 0.02562 * 12 11 10 14 14 C 1.40481 * 121.85041 * 180.02562 * 13 12 11 15 15 N 1.31211 * 119.94259 * 179.97438 * 14 13 12 16 16 C 1.32561 * 122.80669 * 359.97438 * 15 14 13 17 17 C 1.36220 * 121.84351 * 0.02562 * 16 15 14 18 18 C 1.40763 * 118.67387 * 359.95829 * 17 16 15 19 19 C 1.38523 * 119.73456 * 179.73384 * 10 8 7 20 20 C 1.53038 * 109.53632 * 61.34673 * 5 4 2 21 21 C 1.53191 * 109.31291 * 298.63263 * 20 5 4 22 22 N 1.46929 * 108.77642 * 54.64098 * 21 20 5 23 23 C 1.36933 * 120.63495 * 126.42991 * 22 21 20 24 24 H 1.08003 * 120.00098 * 209.00886 * 23 22 21 25 25 C 1.38814 * 120.00092 * 29.00384 * 23 22 21 26 26 N 1.31621 * 119.99524 * 15.02137 * 25 23 22 27 27 Si 1.86791 * 120.00198 * 195.01299 * 25 23 22 28 28 H 1.48501 * 109.47056 * 90.00332 * 27 25 23 29 29 H 1.48497 * 109.47387 * 210.00206 * 27 25 23 30 30 H 1.48494 * 109.47364 * 330.00365 * 27 25 23 31 31 H 1.08998 * 109.46924 * 180.35376 * 1 2 3 32 32 H 1.08998 * 109.47152 * 300.34878 * 1 2 3 33 33 H 1.08996 * 109.47326 * 60.35628 * 1 2 3 34 34 H 1.08998 * 109.49924 * 65.62655 * 4 2 1 35 35 H 1.08999 * 109.49902 * 305.55865 * 4 2 1 36 36 H 0.97005 * 120.00238 * 335.00396 * 7 5 4 37 37 H 1.08001 * 119.52676 * 0.02562 * 11 10 8 38 38 H 1.07998 * 120.06129 * 179.97438 * 12 11 10 39 39 H 1.07998 * 120.03179 * 359.95879 * 14 13 12 40 40 H 1.08002 * 119.07957 * 179.97438 * 16 15 14 41 41 H 1.08000 * 120.66341 * 179.97438 * 17 16 15 42 42 H 1.08004 * 120.36437 * 359.97168 * 19 10 8 43 43 H 1.08999 * 109.49774 * 58.58563 * 20 5 4 44 44 H 1.09001 * 109.49373 * 178.68782 * 20 5 4 45 45 H 1.09000 * 109.58688 * 174.42290 * 21 20 5 46 46 H 1.08991 * 109.59212 * 294.84802 * 21 20 5 47 47 H 0.97005 * 119.99466 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8974 1.0262 0.0000 4 6 2.0436 -0.7293 -1.2455 5 6 3.5676 -0.8485 -1.1706 6 1 4.0066 0.1466 -1.1000 7 7 4.0646 -1.5166 -2.3759 8 6 5.3288 -1.3036 -2.7918 9 8 6.0566 -0.5575 -2.1665 10 6 5.8304 -1.9776 -4.0088 11 6 4.9837 -2.8399 -4.7274 12 6 5.4185 -3.4714 -5.8489 13 6 6.7318 -3.2657 -6.3035 14 6 7.2241 -3.8969 -7.4579 15 7 8.4572 -3.6774 -7.8490 16 6 9.2845 -2.8718 -7.1981 17 6 8.9049 -2.2124 -6.0682 18 6 7.5954 -2.3970 -5.5861 19 6 7.1290 -1.7503 -4.4343 20 6 3.9569 -1.6663 0.0629 21 6 3.4658 -0.9471 1.3232 22 7 2.0233 -0.6992 1.1945 23 6 1.1547 -1.1115 2.1694 24 1 0.1367 -1.3656 1.9134 25 6 1.5826 -1.2030 3.4868 26 7 2.7063 -0.6252 3.8553 27 14 0.5635 -2.1458 4.7365 28 1 0.9966 -3.5661 4.7580 29 1 0.7553 -1.5494 6.0828 30 1 -0.8716 -2.0716 4.3622 31 1 -0.3633 -1.0276 0.0063 32 1 -0.3633 0.5192 0.8868 33 1 -0.3634 0.5083 -0.8931 34 1 1.7661 -0.1667 -2.1368 35 1 1.6026 -1.7250 -1.2918 36 1 3.4838 -2.1123 -2.8748 37 1 3.9729 -3.0019 -4.3834 38 1 4.7560 -4.1311 -6.3896 39 1 6.5883 -4.5625 -8.0229 40 1 10.2879 -2.7351 -7.5736 41 1 9.5949 -1.5608 -5.5527 42 1 7.7755 -1.0840 -3.8825 43 1 3.4979 -2.6532 0.0049 44 1 5.0412 -1.7706 0.1028 45 1 3.6526 -1.5719 2.1967 46 1 3.9915 0.0015 1.4310 47 1 3.0055 -0.6895 4.7758 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000947891315.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:16:45 Heat of formation + Delta-G solvation = 17.003429 kcal Electronic energy + Delta-G solvation = -28471.645203 eV Core-core repulsion = 24618.614756 eV Total energy + Delta-G solvation = -3853.030447 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.96625 -40.97878 -39.36888 -37.96052 -36.21053 -34.29985 -33.99759 -33.23811 -32.30600 -31.05109 -30.63620 -28.02743 -26.91240 -25.81289 -24.79532 -23.82147 -23.28829 -22.60543 -21.64001 -21.04056 -19.40931 -18.67794 -18.24319 -17.76368 -17.23281 -17.10569 -16.67628 -16.13248 -15.92249 -15.75114 -15.56895 -15.22978 -15.15114 -14.88193 -14.73797 -14.61945 -14.51956 -14.34073 -13.81312 -13.44960 -13.32866 -13.05922 -12.95896 -12.73554 -12.65635 -12.61596 -12.37406 -12.10961 -12.06964 -11.84702 -11.71796 -11.51759 -11.40356 -11.26571 -11.00200 -10.55549 -10.52239 -10.28179 -9.99578 -9.12356 -8.65162 -7.82939 -5.29622 -0.83733 -0.34762 0.80555 1.46835 1.48152 1.49236 1.57784 2.02950 2.31692 2.53217 3.05462 3.32911 3.47003 3.50554 3.53026 3.61307 3.74543 3.82055 3.86083 4.00221 4.05662 4.07712 4.26001 4.29472 4.39009 4.58944 4.61608 4.65711 4.70991 4.75083 4.75674 4.81911 4.92897 4.95902 5.03566 5.06745 5.08827 5.15793 5.21087 5.26353 5.38948 5.45556 5.53974 5.56782 5.61489 5.71179 5.72060 5.73857 6.43581 6.50019 6.95714 7.15151 7.17557 7.89496 8.42104 9.24378 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.024895 B = 0.002133 C = 0.002089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1124.444486 B =13125.734417 C =13397.918039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.158 3.842 3 H 0.010 0.990 4 C -0.118 4.118 5 C 0.161 3.839 6 H 0.056 0.944 7 N -0.700 5.700 8 C 0.549 3.451 9 O -0.582 6.582 10 C -0.118 4.118 11 C -0.100 4.100 12 C -0.073 4.073 13 C -0.110 4.110 14 C 0.147 3.853 15 N -0.508 5.508 16 C 0.067 3.933 17 C -0.154 4.154 18 C -0.050 4.050 19 C -0.060 4.060 20 C -0.131 4.131 21 C 0.183 3.817 22 N -0.603 5.603 23 C -0.245 4.245 24 H 0.082 0.918 25 C -0.060 4.060 26 N -0.942 5.942 27 Si 0.965 3.035 28 H -0.288 1.288 29 H -0.302 1.302 30 H -0.263 1.263 31 H 0.057 0.943 32 H 0.038 0.962 33 H 0.078 0.922 34 H 0.091 0.909 35 H 0.080 0.920 36 H 0.415 0.585 37 H 0.159 0.841 38 H 0.182 0.818 39 H 0.200 0.800 40 H 0.175 0.825 41 H 0.154 0.846 42 H 0.133 0.867 43 H 0.064 0.936 44 H 0.042 0.958 45 H 0.056 0.944 46 H -0.015 1.015 47 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.410 -7.534 -25.906 27.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.052 3.948 3 H 0.028 0.972 4 C -0.157 4.157 5 C 0.057 3.943 6 H 0.074 0.926 7 N -0.351 5.351 8 C 0.337 3.663 9 O -0.463 6.463 10 C -0.122 4.122 11 C -0.118 4.118 12 C -0.092 4.092 13 C -0.112 4.112 14 C -0.024 4.024 15 N -0.216 5.216 16 C -0.075 4.075 17 C -0.174 4.174 18 C -0.055 4.055 19 C -0.080 4.080 20 C -0.171 4.171 21 C 0.056 3.944 22 N -0.327 5.327 23 C -0.375 4.375 24 H 0.100 0.900 25 C -0.255 4.255 26 N -0.589 5.589 27 Si 0.794 3.206 28 H -0.215 1.215 29 H -0.229 1.229 30 H -0.188 1.188 31 H 0.076 0.924 32 H 0.057 0.943 33 H 0.097 0.903 34 H 0.110 0.890 35 H 0.098 0.902 36 H 0.254 0.746 37 H 0.176 0.824 38 H 0.199 0.801 39 H 0.217 0.783 40 H 0.192 0.808 41 H 0.172 0.828 42 H 0.151 0.849 43 H 0.083 0.917 44 H 0.060 0.940 45 H 0.074 0.926 46 H 0.004 0.996 47 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 5.383 -7.329 -26.042 27.584 hybrid contribution -0.257 0.324 2.269 2.307 sum 5.126 -7.004 -23.773 25.308 Atomic orbital electron populations 1.21708 0.93706 1.01817 1.01161 1.20659 0.94820 0.92864 0.86473 0.97236 1.22193 0.92042 1.02536 0.98917 1.20714 0.95273 0.95175 0.83179 0.92575 1.45926 1.12925 1.48270 1.27965 1.18758 0.82052 0.80880 0.84605 1.90778 1.57474 1.39472 1.58553 1.20006 0.95762 1.00630 0.95850 1.21238 1.00367 0.95069 0.95122 1.21317 0.93834 0.98500 0.95530 1.19469 0.95985 0.98309 0.97459 1.23830 0.91715 0.95151 0.91708 1.67461 1.05271 1.16170 1.32724 1.22572 1.00192 0.92567 0.92188 1.22214 0.95403 1.01510 0.98263 1.18334 0.95183 0.96955 0.95023 1.21433 0.94904 0.97164 0.94460 1.22313 0.98925 0.99720 0.96120 1.20450 0.83713 0.95407 0.94816 1.44439 1.02580 1.65605 1.20046 1.19575 0.95331 1.36059 0.86571 0.89998 1.25896 0.99136 1.01314 0.99111 1.70204 1.25339 1.46688 1.16712 0.85291 0.79147 0.78081 0.78120 1.21496 1.22922 1.18753 0.92431 0.94256 0.90341 0.89020 0.90175 0.74622 0.82380 0.80091 0.78325 0.80774 0.82823 0.84947 0.91736 0.93951 0.92554 0.99642 0.94503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.20 7.95 71.98 0.57 -3.63 16 2 C 0.16 6.11 3.50 44.97 0.16 6.26 16 3 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 4 C -0.12 -3.44 4.84 30.67 0.15 -3.29 16 5 C 0.16 5.34 2.42 45.02 0.11 5.45 16 6 H 0.06 2.20 7.58 -2.39 -0.02 2.18 16 7 N -0.70 -17.71 5.03 -445.24 -2.24 -19.95 16 8 C 0.55 15.99 7.73 86.80 0.67 16.66 16 9 O -0.58 -22.62 15.97 -3.87 -0.06 -22.68 16 10 C -0.12 -2.60 5.87 -20.08 -0.12 -2.72 16 11 C -0.10 -1.38 9.44 22.29 0.21 -1.17 16 12 C -0.07 -0.77 9.77 22.27 0.22 -0.55 16 13 C -0.11 -1.65 5.75 -21.26 -0.12 -1.78 16 14 C 0.15 1.90 11.04 85.33 0.94 2.85 16 15 N -0.51 -8.60 10.29 -195.51 -2.01 -10.61 16 16 C 0.07 1.02 11.07 84.11 0.93 1.96 16 17 C -0.15 -2.51 9.88 22.42 0.22 -2.29 16 18 C -0.05 -0.95 5.74 -21.29 -0.12 -1.07 16 19 C -0.06 -1.36 9.38 22.79 0.21 -1.14 16 20 C -0.13 -5.19 5.65 30.67 0.17 -5.02 16 21 C 0.18 9.17 5.29 86.36 0.46 9.63 16 22 N -0.60 -29.37 2.99 -675.21 -2.02 -31.39 16 23 C -0.25 -12.89 8.61 84.03 0.72 -12.17 16 24 H 0.08 4.06 6.20 -2.91 -0.02 4.04 16 25 C -0.06 -3.34 4.96 84.86 0.42 -2.92 16 26 N -0.94 -56.85 11.14 21.65 0.24 -56.61 16 27 Si 0.96 44.65 29.58 68.60 2.03 46.68 16 28 H -0.29 -13.18 7.11 99.48 0.71 -12.47 16 29 H -0.30 -14.37 7.11 99.48 0.71 -13.66 16 30 H -0.26 -11.35 7.11 99.48 0.71 -10.64 16 31 H 0.06 1.87 7.41 -2.39 -0.02 1.85 16 32 H 0.04 1.47 7.66 -2.39 -0.02 1.46 16 33 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 34 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 35 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 36 H 0.42 7.06 6.58 -92.70 -0.61 6.45 16 37 H 0.16 1.26 6.34 -2.91 -0.02 1.24 16 38 H 0.18 0.38 8.06 -2.91 -0.02 0.36 16 39 H 0.20 0.99 8.06 -2.91 -0.02 0.96 16 40 H 0.18 1.74 8.06 -2.91 -0.02 1.72 16 41 H 0.15 1.93 8.06 -2.91 -0.02 1.91 16 42 H 0.13 3.21 7.62 -2.91 -0.02 3.19 16 43 H 0.06 2.44 8.14 -2.39 -0.02 2.42 16 44 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 45 H 0.06 3.20 6.06 -2.39 -0.01 3.19 16 46 H -0.01 -0.81 8.14 -2.39 -0.02 -0.83 16 47 H 0.25 14.51 8.31 -92.70 -0.77 13.74 16 Total: -1.00 -76.19 378.16 2.13 -74.07 By element: Atomic # 1 Polarization: 15.06 SS G_CDS: 0.38 Total: 15.44 kcal Atomic # 6 Polarization: -0.76 SS G_CDS: 5.81 Total: 5.05 kcal Atomic # 7 Polarization: -112.54 SS G_CDS: -6.03 Total: -118.56 kcal Atomic # 8 Polarization: -22.62 SS G_CDS: -0.06 Total: -22.68 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 2.03 Total: 46.68 kcal Total: -76.19 2.13 -74.07 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947891315.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.071 kcal (2) G-P(sol) polarization free energy of solvation -76.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.068 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds