Wall clock time and date at job start Tue Mar 31 2020 22:16:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.58667 * 2 1 4 4 C 1.53189 * 109.70060 * 239.64577 * 2 1 3 5 5 C 1.53046 * 109.31012 * 185.50917 * 4 2 1 6 6 H 1.08998 * 109.45632 * 301.34143 * 5 4 2 7 7 N 1.46500 * 109.46066 * 181.38766 * 5 4 2 8 8 C 1.34773 * 120.00359 * 154.99755 * 7 5 4 9 9 O 1.21558 * 120.00087 * 359.97438 * 8 7 5 10 10 C 1.47774 * 119.99951 * 180.02562 * 8 7 5 11 11 C 1.40650 * 119.70024 * 359.72021 * 10 8 7 12 12 C 1.35848 * 120.87482 * 179.75164 * 11 10 8 13 13 C 1.40403 * 119.84334 * 0.52253 * 12 11 10 14 14 C 1.40636 * 121.96597 * 179.69488 * 13 12 11 15 15 C 1.36218 * 118.72840 * 180.02562 * 14 13 12 16 16 N 1.32605 * 121.89633 * 0.05115 * 15 14 13 17 17 C 1.31235 * 122.74350 * 359.96912 * 16 15 14 18 18 C 1.40552 * 119.88919 * 0.02562 * 17 16 15 19 19 C 1.38568 * 119.69738 * 180.02562 * 10 8 7 20 20 C 1.53039 * 109.54165 * 61.36328 * 5 4 2 21 21 C 1.53193 * 109.31100 * 298.63803 * 20 5 4 22 22 N 1.46923 * 108.77736 * 54.63053 * 21 20 5 23 23 C 1.36942 * 120.62679 * 126.41425 * 22 21 20 24 24 H 1.08003 * 119.99669 * 209.02272 * 23 22 21 25 25 C 1.38808 * 119.99985 * 29.01717 * 23 22 21 26 26 N 1.31615 * 119.99919 * 15.01518 * 25 23 22 27 27 Si 1.86803 * 119.99890 * 195.00718 * 25 23 22 28 28 H 1.48497 * 109.46802 * 90.00462 * 27 25 23 29 29 H 1.48504 * 109.47224 * 210.00444 * 27 25 23 30 30 H 1.48498 * 109.47058 * 330.00637 * 27 25 23 31 31 H 1.09007 * 109.46754 * 299.71194 * 1 2 3 32 32 H 1.08991 * 109.47148 * 59.71242 * 1 2 3 33 33 H 1.08997 * 109.46904 * 179.71834 * 1 2 3 34 34 H 1.09003 * 109.50089 * 305.45291 * 4 2 1 35 35 H 1.08994 * 109.50370 * 65.52331 * 4 2 1 36 36 H 0.97003 * 119.99571 * 334.99693 * 7 5 4 37 37 H 1.08002 * 119.56061 * 0.02562 * 11 10 8 38 38 H 1.08002 * 120.07699 * 180.24311 * 12 11 10 39 39 H 1.07994 * 120.63850 * 0.05436 * 14 13 12 40 40 H 1.07992 * 119.05362 * 180.02562 * 15 14 13 41 41 H 1.07996 * 120.05636 * 180.02562 * 17 16 15 42 42 H 1.08001 * 120.34315 * 359.95590 * 19 10 8 43 43 H 1.08998 * 109.49776 * 178.68145 * 20 5 4 44 44 H 1.09005 * 109.49551 * 58.58523 * 20 5 4 45 45 H 1.08999 * 109.58204 * 294.84617 * 21 20 5 46 46 H 1.08999 * 109.58286 * 174.42177 * 21 20 5 47 47 H 0.97007 * 119.99487 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0464 -0.7288 -1.2445 5 6 3.5706 -0.8443 -1.1674 6 1 4.0071 0.1519 -1.0965 7 7 4.0711 -1.5115 -2.3718 8 6 5.3353 -1.2956 -2.7858 9 8 6.0602 -0.5468 -2.1602 10 6 5.8399 -1.9682 -4.0011 11 6 4.9972 -2.8370 -4.7175 12 6 5.4347 -3.4639 -5.8404 13 6 6.7478 -3.2543 -6.2910 14 6 7.2490 -3.8850 -7.4438 15 6 8.5337 -3.6346 -7.8211 16 7 9.3194 -2.8174 -7.1331 17 6 8.9205 -2.1951 -6.0487 18 6 7.6113 -2.3847 -5.5737 19 6 7.1409 -1.7420 -4.4208 20 6 3.9602 -1.6608 0.0670 21 6 3.4654 -0.9425 1.3264 22 7 2.0226 -0.6980 1.1953 23 6 1.1535 -1.1125 2.1690 24 1 0.1366 -1.3694 1.9114 25 6 1.5796 -1.2028 3.4870 26 7 2.7012 -0.6221 3.8572 27 14 0.5609 -2.1481 4.7353 28 1 0.9977 -3.5672 4.7577 29 1 0.7491 -1.5509 6.0819 30 1 -0.8738 -2.0776 4.3586 31 1 -0.3633 0.5094 0.8926 32 1 -0.3633 0.5182 -0.8873 33 1 -0.3633 -1.0276 -0.0051 34 1 1.6080 -1.7257 -1.2905 35 1 1.7683 -0.1676 -2.1365 36 1 3.4924 -2.1088 -2.8713 37 1 3.9875 -3.0046 -4.3726 38 1 4.7754 -4.1254 -6.3828 39 1 6.6271 -4.5546 -8.0193 40 1 8.9238 -4.1158 -8.7057 41 1 9.5971 -1.5385 -5.5221 42 1 7.7857 -1.0773 -3.8651 43 1 5.0447 -1.7624 0.1085 44 1 3.5037 -2.6489 0.0086 45 1 3.9886 0.0076 1.4345 46 1 3.6525 -1.5666 2.2002 47 1 2.9988 -0.6849 4.7784 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000947899186.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:16:31 Heat of formation + Delta-G solvation = 36.891614 kcal Electronic energy + Delta-G solvation = -28473.199407 eV Core-core repulsion = 24621.031376 eV Total energy + Delta-G solvation = -3852.168031 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.23685 -39.82552 -37.91793 -37.08410 -34.70902 -33.34333 -32.54641 -31.95611 -31.02415 -30.10409 -29.37856 -26.44664 -25.42133 -24.43585 -24.26408 -22.69615 -22.04393 -21.38507 -20.26343 -19.46975 -18.31438 -18.07638 -17.04788 -16.40360 -16.02448 -15.71879 -15.38349 -15.11354 -14.96110 -14.41812 -14.36859 -14.05831 -13.94416 -13.91817 -13.66264 -13.45075 -13.30292 -12.85804 -12.74532 -12.28555 -12.27198 -11.63791 -11.62091 -11.24932 -11.12357 -10.93900 -10.92155 -10.68666 -10.58211 -10.32598 -10.18715 -10.07126 -10.01690 -9.82699 -9.75671 -9.50996 -9.39834 -8.78161 -8.47944 -8.41153 -6.65920 -5.77616 -3.21963 -0.12803 0.34571 1.45043 2.30164 3.18698 3.23561 3.37240 3.43759 3.45107 3.75234 4.01276 4.13516 4.28232 4.38293 4.48091 4.55862 4.64246 4.77427 4.83044 5.18574 5.23583 5.29758 5.34881 5.39330 5.40805 5.53304 5.55736 5.59273 5.74317 5.89788 5.93406 5.97423 6.12912 6.20112 6.22456 6.29126 6.32773 6.38670 6.40449 6.48122 6.61720 6.77592 6.85333 7.00905 7.07518 7.37586 7.56762 7.60606 7.69832 7.81618 8.27763 8.46238 9.21717 9.85210 10.41936 11.30898 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.024887 B = 0.002135 C = 0.002091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1124.820965 B =13112.979892 C =13387.114896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.171 3.829 3 H 0.027 0.973 4 C -0.134 4.134 5 C 0.150 3.850 6 H 0.083 0.917 7 N -0.717 5.717 8 C 0.552 3.448 9 O -0.533 6.533 10 C -0.131 4.131 11 C -0.070 4.070 12 C -0.119 4.119 13 C -0.010 4.010 14 C -0.160 4.160 15 C 0.082 3.918 16 N -0.493 5.493 17 C 0.159 3.841 18 C -0.123 4.123 19 C -0.018 4.018 20 C -0.147 4.147 21 C 0.174 3.826 22 N -0.588 5.588 23 C -0.251 4.251 24 H 0.070 0.930 25 C 0.002 3.998 26 N -0.902 5.902 27 Si 0.901 3.099 28 H -0.288 1.288 29 H -0.292 1.292 30 H -0.279 1.279 31 H 0.063 0.937 32 H 0.038 0.962 33 H 0.053 0.947 34 H 0.063 0.937 35 H 0.055 0.945 36 H 0.394 0.606 37 H 0.132 0.868 38 H 0.137 0.863 39 H 0.139 0.861 40 H 0.154 0.846 41 H 0.168 0.832 42 H 0.150 0.850 43 H 0.053 0.947 44 H 0.055 0.945 45 H 0.020 0.980 46 H 0.091 0.909 47 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.020 -6.028 -22.908 24.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.064 3.936 3 H 0.045 0.955 4 C -0.174 4.174 5 C 0.047 3.953 6 H 0.101 0.899 7 N -0.367 5.367 8 C 0.338 3.662 9 O -0.411 6.411 10 C -0.134 4.134 11 C -0.089 4.089 12 C -0.137 4.137 13 C -0.015 4.015 14 C -0.180 4.180 15 C -0.061 4.061 16 N -0.201 5.201 17 C -0.012 4.012 18 C -0.125 4.125 19 C -0.039 4.039 20 C -0.187 4.187 21 C 0.048 3.952 22 N -0.311 5.311 23 C -0.380 4.380 24 H 0.088 0.912 25 C -0.197 4.197 26 N -0.547 5.547 27 Si 0.731 3.269 28 H -0.215 1.215 29 H -0.218 1.218 30 H -0.205 1.205 31 H 0.082 0.918 32 H 0.057 0.943 33 H 0.072 0.928 34 H 0.082 0.918 35 H 0.074 0.926 36 H 0.228 0.772 37 H 0.150 0.850 38 H 0.155 0.845 39 H 0.157 0.843 40 H 0.171 0.829 41 H 0.185 0.815 42 H 0.168 0.832 43 H 0.072 0.928 44 H 0.073 0.927 45 H 0.039 0.961 46 H 0.109 0.891 47 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 7.395 -5.434 -22.679 24.466 hybrid contribution -1.647 -1.050 0.720 2.081 sum 5.748 -6.484 -21.960 23.608 Atomic orbital electron populations 1.21791 0.95728 1.01379 1.00388 1.20352 0.93082 0.93606 0.86606 0.95528 1.22386 0.93583 1.01675 0.99764 1.21102 0.94280 0.96847 0.83039 0.89867 1.46269 1.12907 1.48325 1.29223 1.18168 0.82343 0.81619 0.84028 1.90799 1.56381 1.37169 1.56778 1.20107 0.95323 1.00633 0.97372 1.21081 0.99487 0.94217 0.94161 1.20858 0.94572 1.01008 0.97223 1.18299 0.94108 0.94742 0.94354 1.21930 0.97594 1.01464 0.97025 1.22265 0.90638 0.94559 0.98594 1.67493 1.37615 1.07792 1.07173 1.23354 0.92175 0.94496 0.91216 1.19021 0.96179 0.99991 0.97346 1.21488 0.94480 0.95079 0.92818 1.22581 0.99795 0.99577 0.96757 1.20765 0.83174 0.97362 0.93892 1.44176 1.02961 1.64954 1.19015 1.19175 0.94884 1.37735 0.86234 0.91194 1.25105 0.97857 0.99727 0.97009 1.70016 1.23420 1.44374 1.16862 0.86308 0.79805 0.79764 0.80975 1.21539 1.21808 1.20472 0.91805 0.94306 0.92797 0.91798 0.92648 0.77171 0.85037 0.84536 0.84271 0.82889 0.81505 0.83249 0.92836 0.92669 0.96141 0.89096 0.93633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.42 7.95 37.16 0.30 -2.13 16 2 C 0.17 3.39 3.49 -67.60 -0.24 3.16 16 3 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 4 C -0.13 -2.16 4.85 -26.61 -0.13 -2.29 16 5 C 0.15 2.54 2.42 -67.89 -0.16 2.38 16 6 H 0.08 1.59 7.58 -51.93 -0.39 1.20 16 7 N -0.72 -9.72 5.03 -54.73 -0.28 -10.00 16 8 C 0.55 8.04 7.73 -12.36 -0.10 7.94 16 9 O -0.53 -9.81 15.96 5.31 0.08 -9.73 16 10 C -0.13 -1.49 5.87 -104.97 -0.62 -2.11 16 11 C -0.07 -0.61 9.44 -39.53 -0.37 -0.98 16 12 C -0.12 -0.92 9.77 -39.62 -0.39 -1.31 16 13 C -0.01 -0.09 5.75 -106.74 -0.61 -0.70 16 14 C -0.16 -1.18 9.87 -39.40 -0.39 -1.57 16 15 C 0.08 0.66 11.07 -17.94 -0.20 0.46 16 16 N -0.49 -4.86 10.30 -13.12 -0.14 -5.00 16 17 C 0.16 1.44 11.05 -16.93 -0.19 1.26 16 18 C -0.12 -1.21 5.74 -106.87 -0.61 -1.82 16 19 C -0.02 -0.19 9.37 -38.75 -0.36 -0.55 16 20 C -0.15 -2.86 5.65 -26.61 -0.15 -3.01 16 21 C 0.17 4.16 5.29 -3.71 -0.02 4.14 16 22 N -0.59 -14.12 2.99 -164.78 -0.49 -14.62 16 23 C -0.25 -6.57 8.60 -15.06 -0.13 -6.70 16 24 H 0.07 1.78 6.21 -52.48 -0.33 1.45 16 25 C 0.00 0.05 4.96 -17.43 -0.09 -0.04 16 26 N -0.90 -25.96 11.14 55.49 0.62 -25.35 16 27 Si 0.90 21.38 29.58 -169.99 -5.03 16.35 16 28 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 29 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 30 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 31 H 0.06 1.25 7.62 -51.92 -0.40 0.85 16 32 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.05 0.96 7.44 -51.93 -0.39 0.58 16 34 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 35 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 36 H 0.39 4.10 6.58 -40.82 -0.27 3.83 16 37 H 0.13 0.86 6.34 -52.49 -0.33 0.53 16 38 H 0.14 0.69 8.06 -52.49 -0.42 0.27 16 39 H 0.14 0.63 8.06 -52.49 -0.42 0.21 16 40 H 0.15 0.81 8.06 -52.49 -0.42 0.38 16 41 H 0.17 1.08 8.06 -52.49 -0.42 0.66 16 42 H 0.15 1.54 7.61 -52.49 -0.40 1.14 16 43 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 44 H 0.05 1.07 8.14 -51.93 -0.42 0.64 16 45 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 46 H 0.09 2.43 6.06 -51.93 -0.31 2.12 16 47 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 LS Contribution 378.14 15.07 5.70 5.70 Total: -1.00 -32.49 378.14 -10.59 -43.08 By element: Atomic # 1 Polarization: 10.04 SS G_CDS: -6.60 Total: 3.43 kcal Atomic # 6 Polarization: 0.57 SS G_CDS: -4.46 Total: -3.88 kcal Atomic # 7 Polarization: -54.67 SS G_CDS: -0.28 Total: -54.96 kcal Atomic # 8 Polarization: -9.81 SS G_CDS: 0.08 Total: -9.73 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.03 Total: 16.35 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -32.49 -10.59 -43.08 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947899186.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.971 kcal (2) G-P(sol) polarization free energy of solvation -32.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.079 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds