Wall clock time and date at job start Tue Mar 31 2020 22:16:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.69774 * 2 1 4 4 C 1.53198 * 109.58435 * 239.64825 * 2 1 3 5 5 C 1.53036 * 109.31205 * 185.57488 * 4 2 1 6 6 H 1.08995 * 109.46095 * 181.39073 * 5 4 2 7 7 N 1.46506 * 109.46301 * 301.34514 * 5 4 2 8 8 C 1.34770 * 120.00465 * 205.07000 * 7 5 4 9 9 O 1.21509 * 119.99753 * 359.97438 * 8 7 5 10 10 C 1.48277 * 120.00439 * 180.02562 * 8 7 5 11 11 C 1.40275 * 119.23898 * 180.02562 * 10 8 7 12 12 C 1.36511 * 119.81065 * 179.97438 * 11 10 8 13 13 C 1.40754 * 118.24531 * 0.02562 * 12 11 10 14 14 C 1.40420 * 121.27456 * 180.02562 * 13 12 11 15 15 C 1.36127 * 119.64877 * 179.97438 * 14 13 12 16 16 C 1.39439 * 120.91649 * 359.97438 * 15 14 13 17 17 C 1.35993 * 121.08045 * 359.97438 * 16 15 14 18 18 C 1.40825 * 119.74076 * 0.04407 * 17 16 15 19 19 N 1.31877 * 119.23661 * 359.71964 * 10 8 7 20 20 C 1.53039 * 109.53975 * 61.36491 * 5 4 2 21 21 C 1.53192 * 109.31500 * 298.63840 * 20 5 4 22 22 N 1.46921 * 108.77716 * 54.62899 * 21 20 5 23 23 C 1.36935 * 120.63039 * 126.41625 * 22 21 20 24 24 H 1.08004 * 119.99871 * 208.99632 * 23 22 21 25 25 C 1.38814 * 119.99884 * 28.99749 * 23 22 21 26 26 N 1.31612 * 120.00200 * 15.03459 * 25 23 22 27 27 Si 1.86798 * 119.99944 * 195.03093 * 25 23 22 28 28 H 1.48495 * 109.47316 * 89.99828 * 27 25 23 29 29 H 1.48500 * 109.47279 * 210.00580 * 27 25 23 30 30 H 1.48504 * 109.47339 * 329.99883 * 27 25 23 31 31 H 1.08996 * 109.46989 * 180.35508 * 1 2 3 32 32 H 1.08999 * 109.46902 * 300.34798 * 1 2 3 33 33 H 1.08992 * 109.47235 * 60.34941 * 1 2 3 34 34 H 1.09002 * 109.49612 * 65.62489 * 4 2 1 35 35 H 1.08991 * 109.52557 * 305.54699 * 4 2 1 36 36 H 0.97002 * 119.99249 * 25.06862 * 7 5 4 37 37 H 1.07992 * 120.09791 * 359.97438 * 11 10 8 38 38 H 1.08000 * 120.87772 * 180.02562 * 12 11 10 39 39 H 1.07998 * 120.17100 * 359.95963 * 14 13 12 40 40 H 1.08005 * 119.54318 * 180.02562 * 15 14 13 41 41 H 1.07995 * 119.45857 * 180.02562 * 16 15 14 42 42 H 1.08003 * 120.12954 * 180.02562 * 17 16 15 43 43 H 1.09005 * 109.49562 * 58.58851 * 20 5 4 44 44 H 1.08993 * 109.49979 * 178.68078 * 20 5 4 45 45 H 1.08991 * 109.59083 * 174.42374 * 21 20 5 46 46 H 1.09001 * 109.58344 * 294.84356 * 21 20 5 47 47 H 0.96996 * 120.00390 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8974 1.0262 0.0000 4 6 2.0435 -0.7293 -1.2455 5 6 3.5674 -0.8479 -1.1703 6 1 3.9377 -1.3446 -2.0671 7 7 4.1570 0.4899 -1.0751 8 6 5.4206 0.7009 -1.4937 9 8 6.0710 -0.2186 -1.9498 10 6 6.0175 2.0547 -1.3968 11 6 7.3337 2.2564 -1.8378 12 6 7.8947 3.4981 -1.7545 13 6 7.1195 4.5447 -1.2207 14 6 7.6328 5.8468 -1.1061 15 6 6.8538 6.8342 -0.5853 16 6 5.5509 6.5716 -0.1636 17 6 5.0198 5.3234 -0.2601 18 6 5.7936 4.2743 -0.7930 19 7 5.2965 3.0428 -0.9037 20 6 3.9570 -1.6657 0.0632 21 6 3.4651 -0.9471 1.3235 22 7 2.0227 -0.6996 1.1944 23 6 1.1539 -1.1129 2.1689 24 1 0.1360 -1.3671 1.9124 25 6 1.5815 -1.2050 3.4863 26 7 2.7047 -0.6269 3.8556 27 14 0.5627 -2.1494 4.7351 28 1 0.9966 -3.5694 4.7557 29 1 0.7536 -1.5537 6.0819 30 1 -0.8724 -2.0758 4.3604 31 1 -0.3633 -1.0276 0.0064 32 1 -0.3633 0.5192 0.8869 33 1 -0.3633 0.5084 -0.8930 34 1 1.7659 -0.1667 -2.1369 35 1 1.6030 -1.7252 -1.2921 36 1 3.6379 1.2238 -0.7107 37 1 7.9018 1.4317 -2.2421 38 1 8.9065 3.6729 -2.0893 39 1 8.6402 6.0635 -1.4292 40 1 7.2501 7.8352 -0.4983 41 1 4.9535 7.3728 0.2456 42 1 4.0088 5.1373 0.0708 43 1 3.4984 -2.6528 0.0049 44 1 5.0412 -1.7695 0.1033 45 1 3.6520 -1.5718 2.1969 46 1 3.9904 0.0019 1.4315 47 1 3.0033 -0.6909 4.7762 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000947963603.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:16:05 Heat of formation + Delta-G solvation = 41.900257 kcal Electronic energy + Delta-G solvation = -29448.567624 eV Core-core repulsion = 25596.616784 eV Total energy + Delta-G solvation = -3851.950840 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -41.10776 -39.61474 -37.80864 -36.84196 -34.36666 -33.69523 -32.31067 -31.43873 -30.66509 -30.19661 -29.42415 -26.39590 -25.43204 -24.78526 -23.82734 -22.29188 -22.06743 -21.24593 -20.52210 -18.61521 -18.38656 -17.86250 -17.32862 -16.33658 -15.51552 -15.38281 -15.13168 -15.07649 -14.67146 -14.55026 -14.20277 -14.01505 -13.86682 -13.65781 -13.37651 -13.28633 -13.06817 -12.78507 -12.42032 -11.87313 -11.84272 -11.78260 -11.70955 -11.39866 -11.16691 -10.97630 -10.78117 -10.67043 -10.60380 -10.36866 -10.17856 -10.07839 -10.02924 -9.64315 -9.51092 -9.26044 -8.98724 -8.58851 -8.46837 -8.41850 -6.59747 -5.73571 -3.17876 0.05775 0.51697 1.77076 2.38136 3.26652 3.35863 3.39692 3.46593 3.47325 3.99569 4.03115 4.34653 4.51454 4.56697 4.60388 4.75516 4.93091 4.97339 5.15160 5.26246 5.35742 5.39330 5.42988 5.56697 5.65095 5.70614 5.73651 5.80552 5.86463 6.02380 6.11701 6.16087 6.18776 6.27851 6.28693 6.34700 6.40886 6.48181 6.59442 6.60643 6.65991 6.80219 6.98188 7.05323 7.09794 7.43460 7.54236 7.74409 7.85364 7.92600 8.46025 8.49917 9.25770 9.89504 10.46281 11.34361 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.012753 B = 0.003198 C = 0.002902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2194.952005 B = 8754.690617 C = 9646.891657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.167 3.833 3 H 0.022 0.978 4 C -0.139 4.139 5 C 0.151 3.849 6 H 0.074 0.926 7 N -0.688 5.688 8 C 0.565 3.435 9 O -0.541 6.541 10 C 0.123 3.877 11 C -0.124 4.124 12 C -0.066 4.066 13 C -0.090 4.090 14 C -0.103 4.103 15 C -0.109 4.109 16 C -0.108 4.108 17 C -0.080 4.080 18 C 0.125 3.875 19 N -0.438 5.438 20 C -0.154 4.154 21 C 0.175 3.825 22 N -0.586 5.586 23 C -0.249 4.249 24 H 0.070 0.930 25 C 0.002 3.998 26 N -0.902 5.902 27 Si 0.900 3.100 28 H -0.288 1.288 29 H -0.292 1.292 30 H -0.280 1.280 31 H 0.054 0.946 32 H 0.061 0.939 33 H 0.038 0.962 34 H 0.056 0.944 35 H 0.076 0.924 36 H 0.412 0.588 37 H 0.150 0.850 38 H 0.144 0.856 39 H 0.131 0.869 40 H 0.127 0.873 41 H 0.131 0.869 42 H 0.141 0.859 43 H 0.065 0.935 44 H 0.054 0.946 45 H 0.087 0.913 46 H 0.018 0.982 47 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.330 13.029 -12.165 19.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.060 3.940 3 H 0.040 0.960 4 C -0.178 4.178 5 C 0.047 3.953 6 H 0.092 0.908 7 N -0.339 5.339 8 C 0.349 3.651 9 O -0.418 6.418 10 C -0.031 4.031 11 C -0.145 4.145 12 C -0.092 4.092 13 C -0.092 4.092 14 C -0.122 4.122 15 C -0.127 4.127 16 C -0.128 4.128 17 C -0.099 4.099 18 C 0.001 3.999 19 N -0.149 5.149 20 C -0.194 4.194 21 C 0.049 3.951 22 N -0.310 5.310 23 C -0.379 4.379 24 H 0.088 0.912 25 C -0.196 4.196 26 N -0.547 5.547 27 Si 0.731 3.269 28 H -0.216 1.216 29 H -0.219 1.219 30 H -0.205 1.205 31 H 0.073 0.927 32 H 0.080 0.920 33 H 0.057 0.943 34 H 0.074 0.926 35 H 0.095 0.905 36 H 0.250 0.750 37 H 0.168 0.832 38 H 0.162 0.838 39 H 0.148 0.852 40 H 0.145 0.855 41 H 0.149 0.851 42 H 0.159 0.841 43 H 0.083 0.917 44 H 0.072 0.928 45 H 0.105 0.895 46 H 0.036 0.964 47 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 7.914 12.271 -12.001 18.901 hybrid contribution 0.253 0.064 0.749 0.793 sum 8.168 12.334 -11.252 18.587 Atomic orbital electron populations 1.21795 0.95853 1.01502 1.00226 1.20393 0.93144 0.93265 0.87181 0.96032 1.22365 0.93755 1.02369 0.99338 1.20989 0.93225 0.82082 0.98965 0.90753 1.46049 1.13470 1.13115 1.61216 1.17869 0.82379 0.86249 0.78628 1.90748 1.61325 1.42955 1.46791 1.21489 0.92088 0.93452 0.96044 1.21761 0.95118 0.98537 0.99051 1.21438 0.99774 0.91713 0.96262 1.18983 0.94899 0.95231 1.00073 1.20970 1.00064 0.91454 0.99718 1.20989 0.94258 0.99519 0.97929 1.20935 0.95620 0.96900 0.99304 1.20967 1.00332 0.91093 0.97464 1.18878 0.91432 0.91317 0.98250 1.67882 1.36336 0.99334 1.11356 1.22569 0.99941 0.99431 0.97449 1.20725 0.83144 0.97175 0.94044 1.44131 1.02992 1.64954 1.18927 1.19188 0.94810 1.37664 0.86247 0.91226 1.25077 0.97809 0.99773 0.96947 1.70019 1.23333 1.44561 1.16780 0.86324 0.79834 0.79815 0.80976 1.21558 1.21888 1.20493 0.92681 0.91979 0.94321 0.92558 0.90544 0.74998 0.83185 0.83785 0.85153 0.85460 0.85073 0.84149 0.91656 0.92767 0.89507 0.96377 0.93768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.50 7.94 37.16 0.30 -2.20 16 2 C 0.17 3.34 3.20 -67.59 -0.22 3.13 16 3 H 0.02 0.45 6.64 -51.93 -0.34 0.11 16 4 C -0.14 -2.37 5.07 -26.61 -0.13 -2.51 16 5 C 0.15 2.72 2.78 -67.89 -0.19 2.53 16 6 H 0.07 1.31 7.57 -51.93 -0.39 0.92 16 7 N -0.69 -12.18 4.25 -54.57 -0.23 -12.41 16 8 C 0.57 10.00 7.78 -12.14 -0.09 9.90 16 9 O -0.54 -10.50 15.94 5.36 0.09 -10.41 16 10 C 0.12 1.93 6.75 -82.95 -0.56 1.37 16 11 C -0.12 -1.59 9.54 -39.44 -0.38 -1.97 16 12 C -0.07 -0.69 9.88 -39.25 -0.39 -1.08 16 13 C -0.09 -1.03 5.75 -106.72 -0.61 -1.64 16 14 C -0.10 -0.90 9.77 -39.52 -0.39 -1.28 16 15 C -0.11 -0.87 9.96 -39.89 -0.40 -1.26 16 16 C -0.11 -0.96 9.94 -39.94 -0.40 -1.36 16 17 C -0.08 -0.93 9.99 -39.41 -0.39 -1.32 16 18 C 0.12 1.71 6.61 -84.86 -0.56 1.15 16 19 N -0.44 -6.86 9.47 -7.54 -0.07 -6.94 16 20 C -0.15 -3.12 5.77 -26.61 -0.15 -3.28 16 21 C 0.17 4.22 5.03 -3.71 -0.02 4.20 16 22 N -0.59 -14.20 2.99 -164.78 -0.49 -14.69 16 23 C -0.25 -6.62 8.61 -15.06 -0.13 -6.75 16 24 H 0.07 1.80 6.20 -52.48 -0.33 1.48 16 25 C 0.00 0.07 4.96 -17.43 -0.09 -0.02 16 26 N -0.90 -26.17 11.14 55.49 0.62 -25.55 16 27 Si 0.90 21.66 29.58 -169.99 -5.03 16.63 16 28 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 29 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 30 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 31 H 0.05 1.02 7.40 -51.93 -0.38 0.64 16 32 H 0.06 1.23 7.66 -51.93 -0.40 0.83 16 33 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 34 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 36 H 0.41 7.39 6.17 -40.82 -0.25 7.13 16 37 H 0.15 1.77 7.60 -52.49 -0.40 1.37 16 38 H 0.14 0.98 8.06 -52.49 -0.42 0.55 16 39 H 0.13 0.76 8.06 -52.49 -0.42 0.34 16 40 H 0.13 0.65 8.06 -52.48 -0.42 0.23 16 41 H 0.13 0.84 8.06 -52.49 -0.42 0.42 16 42 H 0.14 1.57 8.06 -52.48 -0.42 1.14 16 43 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 44 H 0.05 1.11 8.14 -51.93 -0.42 0.68 16 45 H 0.09 2.37 6.06 -51.93 -0.31 2.06 16 46 H 0.02 0.47 7.74 -51.93 -0.40 0.07 16 47 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 LS Contribution 376.36 15.07 5.67 5.67 Total: -1.00 -31.61 376.36 -10.82 -42.44 By element: Atomic # 1 Polarization: 14.24 SS G_CDS: -6.58 Total: 7.66 kcal Atomic # 6 Polarization: 2.40 SS G_CDS: -4.80 Total: -2.40 kcal Atomic # 7 Polarization: -59.41 SS G_CDS: -0.18 Total: -59.59 kcal Atomic # 8 Polarization: -10.50 SS G_CDS: 0.09 Total: -10.41 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.03 Total: 16.63 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -31.61 -10.82 -42.44 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947963603.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.336 kcal (2) G-P(sol) polarization free energy of solvation -31.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.436 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds