Wall clock time and date at job start Tue Mar 31 2020 22:16:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.69774 * 2 1 4 4 C 1.53198 * 109.58435 * 239.64825 * 2 1 3 5 5 C 1.53036 * 109.31205 * 185.57488 * 4 2 1 6 6 H 1.08995 * 109.46095 * 181.39073 * 5 4 2 7 7 N 1.46506 * 109.46301 * 301.34514 * 5 4 2 8 8 C 1.34770 * 120.00465 * 205.07000 * 7 5 4 9 9 O 1.21509 * 119.99753 * 359.97438 * 8 7 5 10 10 C 1.48277 * 120.00439 * 180.02562 * 8 7 5 11 11 C 1.40275 * 119.23898 * 180.02562 * 10 8 7 12 12 C 1.36511 * 119.81065 * 179.97438 * 11 10 8 13 13 C 1.40754 * 118.24531 * 0.02562 * 12 11 10 14 14 C 1.40420 * 121.27456 * 180.02562 * 13 12 11 15 15 C 1.36127 * 119.64877 * 179.97438 * 14 13 12 16 16 C 1.39439 * 120.91649 * 359.97438 * 15 14 13 17 17 C 1.35993 * 121.08045 * 359.97438 * 16 15 14 18 18 C 1.40825 * 119.74076 * 0.04407 * 17 16 15 19 19 N 1.31877 * 119.23661 * 359.71964 * 10 8 7 20 20 C 1.53039 * 109.53975 * 61.36491 * 5 4 2 21 21 C 1.53192 * 109.31500 * 298.63840 * 20 5 4 22 22 N 1.46921 * 108.77716 * 54.62899 * 21 20 5 23 23 C 1.36935 * 120.63039 * 126.41625 * 22 21 20 24 24 H 1.08004 * 119.99871 * 208.99632 * 23 22 21 25 25 C 1.38814 * 119.99884 * 28.99749 * 23 22 21 26 26 N 1.31612 * 120.00200 * 15.03459 * 25 23 22 27 27 Si 1.86798 * 119.99944 * 195.03093 * 25 23 22 28 28 H 1.48495 * 109.47316 * 89.99828 * 27 25 23 29 29 H 1.48500 * 109.47279 * 210.00580 * 27 25 23 30 30 H 1.48504 * 109.47339 * 329.99883 * 27 25 23 31 31 H 1.08996 * 109.46989 * 180.35508 * 1 2 3 32 32 H 1.08999 * 109.46902 * 300.34798 * 1 2 3 33 33 H 1.08992 * 109.47235 * 60.34941 * 1 2 3 34 34 H 1.09002 * 109.49612 * 65.62489 * 4 2 1 35 35 H 1.08991 * 109.52557 * 305.54699 * 4 2 1 36 36 H 0.97002 * 119.99249 * 25.06862 * 7 5 4 37 37 H 1.07992 * 120.09791 * 359.97438 * 11 10 8 38 38 H 1.08000 * 120.87772 * 180.02562 * 12 11 10 39 39 H 1.07998 * 120.17100 * 359.95963 * 14 13 12 40 40 H 1.08005 * 119.54318 * 180.02562 * 15 14 13 41 41 H 1.07995 * 119.45857 * 180.02562 * 16 15 14 42 42 H 1.08003 * 120.12954 * 180.02562 * 17 16 15 43 43 H 1.09005 * 109.49562 * 58.58851 * 20 5 4 44 44 H 1.08993 * 109.49979 * 178.68078 * 20 5 4 45 45 H 1.08991 * 109.59083 * 174.42374 * 21 20 5 46 46 H 1.09001 * 109.58344 * 294.84356 * 21 20 5 47 47 H 0.96996 * 120.00390 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8974 1.0262 0.0000 4 6 2.0435 -0.7293 -1.2455 5 6 3.5674 -0.8479 -1.1703 6 1 3.9377 -1.3446 -2.0671 7 7 4.1570 0.4899 -1.0751 8 6 5.4206 0.7009 -1.4937 9 8 6.0710 -0.2186 -1.9498 10 6 6.0175 2.0547 -1.3968 11 6 7.3337 2.2564 -1.8378 12 6 7.8947 3.4981 -1.7545 13 6 7.1195 4.5447 -1.2207 14 6 7.6328 5.8468 -1.1061 15 6 6.8538 6.8342 -0.5853 16 6 5.5509 6.5716 -0.1636 17 6 5.0198 5.3234 -0.2601 18 6 5.7936 4.2743 -0.7930 19 7 5.2965 3.0428 -0.9037 20 6 3.9570 -1.6657 0.0632 21 6 3.4651 -0.9471 1.3235 22 7 2.0227 -0.6996 1.1944 23 6 1.1539 -1.1129 2.1689 24 1 0.1360 -1.3671 1.9124 25 6 1.5815 -1.2050 3.4863 26 7 2.7047 -0.6269 3.8556 27 14 0.5627 -2.1494 4.7351 28 1 0.9966 -3.5694 4.7557 29 1 0.7536 -1.5537 6.0819 30 1 -0.8724 -2.0758 4.3604 31 1 -0.3633 -1.0276 0.0064 32 1 -0.3633 0.5192 0.8869 33 1 -0.3633 0.5084 -0.8930 34 1 1.7659 -0.1667 -2.1369 35 1 1.6030 -1.7252 -1.2921 36 1 3.6379 1.2238 -0.7107 37 1 7.9018 1.4317 -2.2421 38 1 8.9065 3.6729 -2.0893 39 1 8.6402 6.0635 -1.4292 40 1 7.2501 7.8352 -0.4983 41 1 4.9535 7.3728 0.2456 42 1 4.0088 5.1373 0.0708 43 1 3.4984 -2.6528 0.0049 44 1 5.0412 -1.7695 0.1033 45 1 3.6520 -1.5718 2.1969 46 1 3.9904 0.0019 1.4315 47 1 3.0033 -0.6909 4.7762 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000947963603.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:16:03 Heat of formation + Delta-G solvation = 23.241689 kcal Electronic energy + Delta-G solvation = -29449.376720 eV Core-core repulsion = 25596.616784 eV Total energy + Delta-G solvation = -3852.759936 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -42.08085 -40.95800 -39.29883 -37.82500 -35.98965 -34.66034 -34.07918 -32.94055 -31.88644 -31.27166 -30.79582 -28.04316 -26.93009 -26.20669 -24.71895 -23.80602 -23.08933 -22.61241 -22.12487 -20.25354 -19.43094 -18.90985 -18.30283 -18.07803 -17.14054 -16.68821 -16.46734 -16.36139 -15.82360 -15.62653 -15.54072 -15.40922 -15.22592 -15.05286 -14.74685 -14.42884 -14.24517 -14.12441 -14.04080 -13.37152 -13.20122 -12.87267 -12.72203 -12.67439 -12.62583 -12.49636 -12.45689 -12.32922 -12.17009 -11.97688 -11.72779 -11.64930 -11.44198 -11.40347 -11.01555 -10.60008 -10.51659 -10.12400 -9.80883 -9.28243 -8.61114 -7.81923 -5.28375 -0.84585 -0.34865 0.92096 1.38217 1.46651 1.48425 1.56295 2.04890 2.23440 2.52916 2.95890 3.08635 3.33032 3.55752 3.60474 3.66984 3.83207 3.86454 3.94828 4.05667 4.15172 4.17961 4.24231 4.37579 4.41274 4.50218 4.58732 4.65197 4.76815 4.77191 4.88268 4.90690 4.95493 5.00535 5.04315 5.08063 5.08648 5.14990 5.37045 5.39045 5.43958 5.49044 5.50716 5.51734 5.55678 5.72852 5.75153 5.86460 6.36719 6.43900 6.69040 7.07928 7.18622 7.90893 8.43261 9.24396 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.012753 B = 0.003198 C = 0.002902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2194.952005 B = 8754.690617 C = 9646.891657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.160 3.840 3 H 0.014 0.986 4 C -0.125 4.125 5 C 0.155 3.845 6 H 0.086 0.914 7 N -0.690 5.690 8 C 0.563 3.437 9 O -0.564 6.564 10 C 0.095 3.905 11 C -0.142 4.142 12 C -0.046 4.046 13 C -0.102 4.102 14 C -0.098 4.098 15 C -0.104 4.104 16 C -0.092 4.092 17 C -0.115 4.115 18 C 0.095 3.905 19 N -0.467 5.467 20 C -0.141 4.141 21 C 0.189 3.811 22 N -0.601 5.601 23 C -0.247 4.247 24 H 0.079 0.921 25 C -0.055 4.055 26 N -0.939 5.939 27 Si 0.962 3.038 28 H -0.290 1.290 29 H -0.300 1.300 30 H -0.265 1.265 31 H 0.053 0.947 32 H 0.040 0.960 33 H 0.075 0.925 34 H 0.087 0.913 35 H 0.083 0.917 36 H 0.410 0.590 37 H 0.155 0.845 38 H 0.189 0.811 39 H 0.169 0.831 40 H 0.167 0.833 41 H 0.158 0.842 42 H 0.130 0.870 43 H 0.070 0.930 44 H 0.046 0.954 45 H 0.049 0.951 46 H -0.011 1.011 47 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.858 15.229 -13.920 22.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.054 3.946 3 H 0.032 0.968 4 C -0.164 4.164 5 C 0.051 3.949 6 H 0.104 0.896 7 N -0.340 5.340 8 C 0.348 3.652 9 O -0.444 6.444 10 C -0.058 4.058 11 C -0.163 4.163 12 C -0.071 4.071 13 C -0.104 4.104 14 C -0.117 4.117 15 C -0.121 4.121 16 C -0.112 4.112 17 C -0.133 4.133 18 C -0.028 4.028 19 N -0.179 5.179 20 C -0.181 4.181 21 C 0.063 3.937 22 N -0.325 5.325 23 C -0.377 4.377 24 H 0.097 0.903 25 C -0.250 4.250 26 N -0.586 5.586 27 Si 0.791 3.209 28 H -0.217 1.217 29 H -0.227 1.227 30 H -0.189 1.189 31 H 0.072 0.928 32 H 0.059 0.941 33 H 0.094 0.906 34 H 0.106 0.894 35 H 0.101 0.899 36 H 0.247 0.753 37 H 0.173 0.827 38 H 0.206 0.794 39 H 0.186 0.814 40 H 0.184 0.816 41 H 0.176 0.824 42 H 0.148 0.852 43 H 0.088 0.912 44 H 0.065 0.935 45 H 0.067 0.933 46 H 0.007 0.993 47 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 8.413 14.470 -13.792 21.688 hybrid contribution 0.128 -0.389 1.287 1.351 sum 8.541 14.081 -12.505 20.679 Atomic orbital electron populations 1.21725 0.94186 1.01634 1.01070 1.20633 0.94550 0.92804 0.86631 0.96829 1.22241 0.92614 1.02760 0.98794 1.20937 0.94112 0.82071 0.97799 0.89625 1.46046 1.13776 1.12780 1.61375 1.18276 0.82016 0.87186 0.77721 1.90707 1.61730 1.44020 1.47901 1.21305 0.93501 0.92496 0.98474 1.21848 0.94210 1.00046 1.00191 1.21905 1.01126 0.90148 0.93959 1.19329 0.94084 0.97067 0.99943 1.21420 1.01711 0.89918 0.98618 1.21484 0.93366 1.01199 0.96095 1.21347 0.96463 0.96182 0.97204 1.21068 1.00403 0.92206 0.99651 1.19304 0.93190 0.90922 0.99408 1.67755 1.37465 1.00387 1.12262 1.22380 0.99303 0.99592 0.96846 1.20365 0.83568 0.95324 0.94430 1.44364 1.02603 1.65632 1.19856 1.19559 0.95292 1.36181 0.86689 0.90345 1.25818 0.99048 1.01227 0.98911 1.70198 1.25269 1.46619 1.16542 0.85333 0.79137 0.78121 0.78289 1.21671 1.22724 1.18938 0.92762 0.94095 0.90584 0.89432 0.89856 0.75292 0.82746 0.79395 0.81395 0.81569 0.82396 0.85247 0.91186 0.93511 0.93262 0.99282 0.94611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.54 7.94 71.98 0.57 -3.97 16 2 C 0.16 6.36 3.20 44.98 0.14 6.50 16 3 H 0.01 0.59 6.64 -2.39 -0.02 0.57 16 4 C -0.12 -4.11 5.07 30.67 0.16 -3.95 16 5 C 0.15 5.59 2.78 45.02 0.13 5.71 16 6 H 0.09 2.96 7.57 -2.39 -0.02 2.94 16 7 N -0.69 -25.36 4.25 -444.87 -1.89 -27.26 16 8 C 0.56 20.86 7.78 86.92 0.68 21.53 16 9 O -0.56 -22.68 15.94 -3.74 -0.06 -22.74 16 10 C 0.09 3.12 6.75 42.30 0.29 3.41 16 11 C -0.14 -3.67 9.54 22.36 0.21 -3.46 16 12 C -0.05 -0.87 9.88 22.48 0.22 -0.65 16 13 C -0.10 -2.17 5.75 -21.22 -0.12 -2.29 16 14 C -0.10 -1.31 9.77 22.31 0.22 -1.09 16 15 C -0.10 -1.21 9.96 22.07 0.22 -0.99 16 16 C -0.09 -1.43 9.94 22.04 0.22 -1.21 16 17 C -0.11 -2.69 9.99 22.38 0.22 -2.47 16 18 C 0.10 2.66 6.61 40.47 0.27 2.93 16 19 N -0.47 -15.50 9.47 -177.77 -1.68 -17.18 16 20 C -0.14 -5.92 5.77 30.67 0.18 -5.74 16 21 C 0.19 9.62 5.03 86.36 0.43 10.06 16 22 N -0.60 -29.83 2.99 -675.24 -2.02 -31.85 16 23 C -0.25 -13.31 8.61 84.03 0.72 -12.59 16 24 H 0.08 4.03 6.20 -2.91 -0.02 4.02 16 25 C -0.06 -3.13 4.96 84.86 0.42 -2.70 16 26 N -0.94 -57.12 11.14 21.65 0.24 -56.88 16 27 Si 0.96 45.56 29.58 68.60 2.03 47.59 16 28 H -0.29 -13.64 7.11 99.48 0.71 -12.93 16 29 H -0.30 -14.49 7.11 99.48 0.71 -13.78 16 30 H -0.26 -11.77 7.11 99.48 0.71 -11.07 16 31 H 0.05 1.91 7.40 -2.39 -0.02 1.89 16 32 H 0.04 1.59 7.66 -2.39 -0.02 1.58 16 33 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 34 H 0.09 2.39 8.14 -2.39 -0.02 2.37 16 35 H 0.08 2.67 8.14 -2.39 -0.02 2.65 16 36 H 0.41 15.48 6.17 -92.71 -0.57 14.90 16 37 H 0.15 3.69 7.60 -2.91 -0.02 3.67 16 38 H 0.19 1.76 8.06 -2.91 -0.02 1.74 16 39 H 0.17 0.98 8.06 -2.91 -0.02 0.95 16 40 H 0.17 0.71 8.06 -2.91 -0.02 0.69 16 41 H 0.16 1.53 8.06 -2.91 -0.02 1.50 16 42 H 0.13 3.14 8.06 -2.91 -0.02 3.11 16 43 H 0.07 2.85 8.14 -2.38 -0.02 2.83 16 44 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 45 H 0.05 2.86 6.06 -2.39 -0.01 2.85 16 46 H -0.01 -0.61 7.74 -2.39 -0.02 -0.63 16 47 H 0.24 14.59 8.31 -92.71 -0.77 13.82 16 Total: -1.00 -73.76 376.36 2.21 -71.55 By element: Atomic # 1 Polarization: 27.33 SS G_CDS: 0.42 Total: 27.75 kcal Atomic # 6 Polarization: 3.83 SS G_CDS: 5.17 Total: 9.01 kcal Atomic # 7 Polarization: -127.81 SS G_CDS: -5.35 Total: -133.17 kcal Atomic # 8 Polarization: -22.68 SS G_CDS: -0.06 Total: -22.74 kcal Atomic # 14 Polarization: 45.56 SS G_CDS: 2.03 Total: 47.59 kcal Total: -73.76 2.21 -71.55 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947963603.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.791 kcal (2) G-P(sol) polarization free energy of solvation -73.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.549 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds