Wall clock time and date at job start Tue Mar 31 2020 22:18:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.70277 * 2 1 4 4 C 1.52760 * 109.43451 * 120.16709 * 2 1 3 5 5 C 1.53034 * 109.38235 * 65.41926 * 4 2 1 6 6 H 1.09005 * 109.45529 * 301.22915 * 5 4 2 7 7 N 1.46510 * 109.46173 * 181.26309 * 5 4 2 8 8 C 1.34777 * 119.99916 * 154.93091 * 7 5 4 9 9 O 1.21595 * 120.00382 * 0.02562 * 8 7 5 10 10 C 1.47444 * 119.99805 * 179.97438 * 8 7 5 11 11 C 1.38954 * 121.16776 * 359.72280 * 10 8 7 12 12 N 1.32206 * 121.31354 * 179.74694 * 11 10 8 13 13 C 1.31194 * 123.69467 * 0.55576 * 12 11 10 14 14 C 1.40382 * 120.91939 * 359.72001 * 13 12 11 15 15 C 1.40395 * 122.15176 * 179.97438 * 14 13 12 16 16 C 1.36224 * 119.48893 * 180.02562 * 15 14 13 17 17 C 1.39294 * 121.10898 * 0.02562 * 16 15 14 18 18 C 1.36439 * 120.94214 * 359.97438 * 17 16 15 19 19 C 1.39689 * 119.43960 * 0.02562 * 18 17 16 20 20 C 1.53046 * 109.53856 * 61.24561 * 5 4 2 21 21 C 1.53188 * 109.30760 * 298.63191 * 20 5 4 22 22 N 1.46920 * 108.77580 * 54.63833 * 21 20 5 23 23 C 1.36939 * 120.63582 * 126.36663 * 22 21 20 24 24 H 1.07995 * 120.00292 * 209.22921 * 23 22 21 25 25 C 1.38821 * 119.99775 * 29.22866 * 23 22 21 26 26 N 1.31613 * 119.99866 * 24.23336 * 25 23 22 27 27 Si 1.86800 * 119.99862 * 204.23488 * 25 23 22 28 28 H 1.48493 * 109.46799 * 179.97438 * 27 25 23 29 29 H 1.48503 * 109.46833 * 299.99850 * 27 25 23 30 30 H 1.48503 * 109.47246 * 59.99528 * 27 25 23 31 31 H 1.09002 * 109.47380 * 180.35403 * 1 2 3 32 32 H 1.08998 * 109.46939 * 300.35854 * 1 2 3 33 33 H 1.08997 * 109.47070 * 60.35089 * 1 2 3 34 34 H 1.09001 * 109.56005 * 305.38961 * 4 2 1 35 35 H 1.09003 * 109.36332 * 185.33608 * 4 2 1 36 36 H 0.97001 * 119.99748 * 334.93351 * 7 5 4 37 37 H 1.08003 * 119.34797 * 0.02562 * 11 10 8 38 38 H 1.08001 * 119.54038 * 179.74333 * 13 12 11 39 39 H 1.08001 * 120.25026 * 0.04742 * 15 14 13 40 40 H 1.08001 * 119.44588 * 180.02562 * 16 15 14 41 41 H 1.07994 * 119.52772 * 180.02562 * 17 16 15 42 42 H 1.08005 * 120.27705 * 179.97438 * 18 17 16 43 43 H 1.09004 * 109.49599 * 178.68183 * 20 5 4 44 44 H 1.08999 * 109.49891 * 58.58386 * 20 5 4 45 45 H 1.08993 * 109.59025 * 294.84561 * 21 20 5 46 46 H 1.09004 * 109.70226 * 174.48951 * 21 20 5 47 47 H 0.97003 * 120.00561 * 5.76988 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0383 -0.7239 1.2455 5 6 1.6409 -2.2000 1.1726 6 1 0.5564 -2.2809 1.0994 7 7 2.1014 -2.8896 2.3804 8 6 1.4758 -4.0081 2.7977 9 8 0.5295 -4.4452 2.1714 10 6 1.9395 -4.7025 4.0129 11 6 3.0224 -4.2283 4.7432 12 7 3.4375 -4.8458 5.8359 13 6 2.8855 -5.9378 6.3091 14 6 1.7858 -6.5273 5.6657 15 6 1.1756 -7.6956 6.1490 16 6 0.1113 -8.2218 5.4810 17 6 -0.3820 -7.6204 4.3255 18 6 0.1870 -6.4844 3.8282 19 6 1.2801 -5.9182 4.4884 20 6 2.2843 -2.8431 -0.0582 21 6 1.7740 -2.1421 -1.3211 22 7 2.0226 -0.6996 -1.1945 23 6 2.7052 -0.0210 -2.1685 24 1 3.2873 0.8517 -1.9118 25 6 2.6490 -0.4549 -3.4860 26 7 1.6257 -1.1718 -3.8996 27 14 4.0259 -0.0214 -4.6716 28 1 3.7298 -0.6000 -6.0067 29 1 4.1351 1.4552 -4.7846 30 1 5.3075 -0.5753 -4.1657 31 1 -0.3634 -1.0276 0.0063 32 1 -0.3633 0.5194 0.8867 33 1 -0.3633 0.5084 -0.8931 34 1 1.5987 -0.2724 2.1349 35 1 3.1241 -0.6413 1.2936 36 1 2.8564 -2.5412 2.8798 37 1 3.5324 -3.3349 4.4140 38 1 3.2823 -6.3893 7.2064 39 1 1.5469 -8.1733 7.0436 40 1 -0.3579 -9.1204 5.8537 41 1 -1.2273 -8.0592 3.8164 42 1 -0.2040 -6.0273 2.9311 43 1 2.0200 -3.8999 -0.0966 44 1 3.3678 -2.7405 0.0022 45 1 0.7043 -2.3203 -1.4310 46 1 2.3004 -2.5283 -2.1940 47 1 0.8715 -1.3264 -3.3094 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000948060313.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:18:17 Heat of formation + Delta-G solvation = 38.406993 kcal Electronic energy + Delta-G solvation = -29111.712974 eV Core-core repulsion = 25259.610655 eV Total energy + Delta-G solvation = -3852.102319 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -41.14874 -39.62015 -37.91299 -37.64319 -34.76974 -33.15995 -32.67697 -31.46678 -31.11637 -30.09694 -29.05030 -27.02468 -25.32799 -24.17674 -23.78033 -23.07295 -21.92434 -21.77531 -20.70269 -18.73844 -18.24801 -17.84095 -17.65293 -17.07363 -16.22151 -15.86215 -15.17770 -15.15586 -14.83661 -14.33734 -14.22287 -14.04895 -13.93571 -13.65016 -13.56104 -13.35168 -13.09214 -12.94573 -12.66922 -12.47091 -12.20882 -12.15638 -11.75946 -11.66835 -11.24866 -10.87808 -10.75552 -10.59608 -10.42282 -10.34434 -10.23212 -10.17154 -9.99225 -9.75807 -9.50316 -9.39759 -9.24716 -8.88946 -8.40225 -8.35597 -6.89774 -6.06346 -3.24770 -0.22885 0.58014 1.40086 2.58280 3.04699 3.09144 3.49388 3.52727 3.70759 3.81110 3.92536 4.20682 4.36981 4.38635 4.55805 4.57851 4.73220 4.86810 4.94652 5.12398 5.17376 5.20832 5.33933 5.39434 5.45065 5.45489 5.65676 5.66915 5.78572 5.86155 5.91999 6.05367 6.11765 6.15501 6.20285 6.23946 6.26862 6.33072 6.43659 6.48498 6.57690 6.59724 6.73144 6.82018 6.94996 7.08035 7.21851 7.50265 7.55658 8.01762 8.19395 8.58377 9.11868 9.84330 10.29317 11.22208 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.020077 B = 0.002490 C = 0.002433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1394.328857 B =11240.528446 C =11504.482167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.172 3.828 3 H 0.068 0.932 4 C -0.134 4.134 5 C 0.150 3.850 6 H 0.088 0.912 7 N -0.715 5.715 8 C 0.564 3.436 9 O -0.532 6.532 10 C -0.168 4.168 11 C 0.118 3.882 12 N -0.497 5.497 13 C 0.173 3.827 14 C -0.122 4.122 15 C -0.091 4.091 16 C -0.118 4.118 17 C -0.099 4.099 18 C -0.109 4.109 19 C 0.011 3.989 20 C -0.142 4.142 21 C 0.155 3.845 22 N -0.591 5.591 23 C -0.350 4.350 24 H 0.055 0.945 25 C -0.022 4.022 26 N -0.914 5.914 27 Si 1.064 2.936 28 H -0.286 1.286 29 H -0.293 1.293 30 H -0.294 1.294 31 H 0.048 0.952 32 H 0.039 0.961 33 H 0.054 0.946 34 H 0.058 0.942 35 H 0.064 0.936 36 H 0.395 0.605 37 H 0.158 0.842 38 H 0.166 0.834 39 H 0.134 0.866 40 H 0.127 0.873 41 H 0.129 0.871 42 H 0.167 0.833 43 H 0.055 0.945 44 H 0.059 0.941 45 H 0.020 0.980 46 H 0.080 0.920 47 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.444 -11.206 22.113 24.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.064 3.936 3 H 0.086 0.914 4 C -0.173 4.173 5 C 0.048 3.952 6 H 0.106 0.894 7 N -0.365 5.365 8 C 0.350 3.650 9 O -0.410 6.410 10 C -0.173 4.173 11 C -0.026 4.026 12 N -0.204 5.204 13 C 0.001 3.999 14 C -0.124 4.124 15 C -0.111 4.111 16 C -0.136 4.136 17 C -0.118 4.118 18 C -0.126 4.126 19 C 0.006 3.994 20 C -0.183 4.183 21 C 0.028 3.972 22 N -0.314 5.314 23 C -0.479 4.479 24 H 0.073 0.927 25 C -0.225 4.225 26 N -0.554 5.554 27 Si 0.894 3.106 28 H -0.211 1.211 29 H -0.220 1.220 30 H -0.221 1.221 31 H 0.067 0.933 32 H 0.058 0.942 33 H 0.073 0.927 34 H 0.077 0.923 35 H 0.083 0.917 36 H 0.229 0.771 37 H 0.175 0.825 38 H 0.183 0.817 39 H 0.152 0.848 40 H 0.145 0.855 41 H 0.147 0.853 42 H 0.184 0.816 43 H 0.074 0.926 44 H 0.078 0.922 45 H 0.038 0.962 46 H 0.098 0.902 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 0.178 -11.215 20.373 23.257 hybrid contribution -0.867 0.047 1.480 1.716 sum -0.689 -11.168 21.853 24.551 Atomic orbital electron populations 1.22337 0.98789 1.00997 1.00322 1.20350 0.91625 0.95300 0.86313 0.91430 1.22238 1.01425 0.93922 0.99744 1.21137 0.99915 0.91425 0.82762 0.89389 1.46254 1.34600 1.26687 1.28967 1.17806 0.82861 0.80713 0.83588 1.90642 1.28162 1.65131 1.57105 1.22015 0.99438 0.97614 0.98273 1.22762 0.92166 0.97957 0.89722 1.67110 1.30633 1.09465 1.13180 1.23285 0.89661 0.89801 0.97134 1.19019 0.98780 0.97917 0.96656 1.20946 0.95979 0.94364 0.99842 1.21006 0.96714 1.00207 0.95667 1.21213 0.99570 0.95349 0.95665 1.21863 0.94222 0.95360 1.01176 1.18934 0.94699 0.92513 0.93284 1.22459 1.00476 0.99098 0.96239 1.20894 0.97289 0.84035 0.94957 1.44198 1.64576 1.02521 1.20108 1.19936 1.25389 1.14119 0.88487 0.92693 1.25857 1.01409 0.99583 0.95645 1.70772 1.05556 1.41063 1.38011 0.83537 0.75266 0.75612 0.76190 1.21127 1.21998 1.22091 0.93295 0.94160 0.92710 0.92326 0.91701 0.77052 0.82493 0.81696 0.84768 0.85483 0.85283 0.81607 0.92639 0.92234 0.96199 0.90165 0.91902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.08 9.02 37.16 0.34 -2.75 16 2 C 0.17 3.42 3.27 -67.82 -0.22 3.20 16 3 H 0.07 1.37 7.93 -51.93 -0.41 0.96 16 4 C -0.13 -2.16 4.99 -26.84 -0.13 -2.30 16 5 C 0.15 2.51 2.21 -67.88 -0.15 2.36 16 6 H 0.09 1.63 5.93 -51.93 -0.31 1.32 16 7 N -0.72 -9.85 5.03 -54.83 -0.28 -10.13 16 8 C 0.56 8.42 7.74 -12.51 -0.10 8.32 16 9 O -0.53 -9.47 13.40 5.28 0.07 -9.40 16 10 C -0.17 -2.17 6.07 -102.66 -0.62 -2.79 16 11 C 0.12 1.31 10.71 -17.13 -0.18 1.13 16 12 N -0.50 -5.43 10.22 -12.58 -0.13 -5.55 16 13 C 0.17 1.55 11.00 -17.02 -0.19 1.37 16 14 C -0.12 -1.22 5.74 -106.89 -0.61 -1.83 16 15 C -0.09 -0.69 9.82 -39.49 -0.39 -1.08 16 16 C -0.12 -0.90 9.94 -39.91 -0.40 -1.30 16 17 C -0.10 -0.93 9.96 -39.84 -0.40 -1.33 16 18 C -0.11 -1.35 9.32 -39.69 -0.37 -1.72 16 19 C 0.01 0.14 5.90 -104.75 -0.62 -0.48 16 20 C -0.14 -2.75 5.65 -26.61 -0.15 -2.90 16 21 C 0.15 3.60 4.29 -3.72 -0.02 3.58 16 22 N -0.59 -14.21 2.54 -165.03 -0.42 -14.63 16 23 C -0.35 -9.51 9.48 -15.05 -0.14 -9.65 16 24 H 0.06 1.50 7.94 -52.49 -0.42 1.08 16 25 C -0.02 -0.63 4.69 -17.43 -0.08 -0.71 16 26 N -0.91 -27.17 12.45 55.49 0.69 -26.48 16 27 Si 1.06 25.03 29.98 -169.99 -5.10 19.93 16 28 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 29 H -0.29 -6.61 7.11 56.52 0.40 -6.20 16 30 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 31 H 0.05 0.93 5.74 -51.93 -0.30 0.64 16 32 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 34 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 35 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 36 H 0.39 4.30 6.71 -40.82 -0.27 4.02 16 37 H 0.16 1.36 6.44 -52.48 -0.34 1.03 16 38 H 0.17 0.86 8.06 -52.49 -0.42 0.44 16 39 H 0.13 0.57 8.06 -52.49 -0.42 0.15 16 40 H 0.13 0.62 8.06 -52.49 -0.42 0.20 16 41 H 0.13 0.95 8.06 -52.49 -0.42 0.53 16 42 H 0.17 2.37 5.24 -52.48 -0.28 2.09 16 43 H 0.05 1.08 8.14 -51.93 -0.42 0.65 16 44 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 45 H 0.02 0.48 7.23 -51.93 -0.38 0.11 16 46 H 0.08 2.11 6.38 -51.93 -0.33 1.78 16 47 H 0.27 8.09 6.71 -40.82 -0.27 7.82 16 LS Contribution 372.09 15.07 5.61 5.61 Total: -1.00 -32.68 372.09 -10.31 -43.00 By element: Atomic # 1 Polarization: 12.85 SS G_CDS: -6.33 Total: 6.53 kcal Atomic # 6 Polarization: -4.43 SS G_CDS: -4.44 Total: -8.87 kcal Atomic # 7 Polarization: -56.66 SS G_CDS: -0.13 Total: -56.79 kcal Atomic # 8 Polarization: -9.47 SS G_CDS: 0.07 Total: -9.40 kcal Atomic # 14 Polarization: 25.03 SS G_CDS: -5.10 Total: 19.93 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -32.68 -10.31 -43.00 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000948060313.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.403 kcal (2) G-P(sol) polarization free energy of solvation -32.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.996 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds