Wall clock time and date at job start Tue Mar 31 2020 22:18:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.70277 * 2 1 4 4 C 1.52760 * 109.43451 * 120.16709 * 2 1 3 5 5 C 1.53034 * 109.38235 * 65.41926 * 4 2 1 6 6 H 1.09005 * 109.45529 * 301.22915 * 5 4 2 7 7 N 1.46510 * 109.46173 * 181.26309 * 5 4 2 8 8 C 1.34777 * 119.99916 * 154.93091 * 7 5 4 9 9 O 1.21595 * 120.00382 * 0.02562 * 8 7 5 10 10 C 1.47444 * 119.99805 * 179.97438 * 8 7 5 11 11 C 1.38954 * 121.16776 * 359.72280 * 10 8 7 12 12 N 1.32206 * 121.31354 * 179.74694 * 11 10 8 13 13 C 1.31194 * 123.69467 * 0.55576 * 12 11 10 14 14 C 1.40382 * 120.91939 * 359.72001 * 13 12 11 15 15 C 1.40395 * 122.15176 * 179.97438 * 14 13 12 16 16 C 1.36224 * 119.48893 * 180.02562 * 15 14 13 17 17 C 1.39294 * 121.10898 * 0.02562 * 16 15 14 18 18 C 1.36439 * 120.94214 * 359.97438 * 17 16 15 19 19 C 1.39689 * 119.43960 * 0.02562 * 18 17 16 20 20 C 1.53046 * 109.53856 * 61.24561 * 5 4 2 21 21 C 1.53188 * 109.30760 * 298.63191 * 20 5 4 22 22 N 1.46920 * 108.77580 * 54.63833 * 21 20 5 23 23 C 1.36939 * 120.63582 * 126.36663 * 22 21 20 24 24 H 1.07995 * 120.00292 * 209.22921 * 23 22 21 25 25 C 1.38821 * 119.99775 * 29.22866 * 23 22 21 26 26 N 1.31613 * 119.99866 * 24.23336 * 25 23 22 27 27 Si 1.86800 * 119.99862 * 204.23488 * 25 23 22 28 28 H 1.48493 * 109.46799 * 179.97438 * 27 25 23 29 29 H 1.48503 * 109.46833 * 299.99850 * 27 25 23 30 30 H 1.48503 * 109.47246 * 59.99528 * 27 25 23 31 31 H 1.09002 * 109.47380 * 180.35403 * 1 2 3 32 32 H 1.08998 * 109.46939 * 300.35854 * 1 2 3 33 33 H 1.08997 * 109.47070 * 60.35089 * 1 2 3 34 34 H 1.09001 * 109.56005 * 305.38961 * 4 2 1 35 35 H 1.09003 * 109.36332 * 185.33608 * 4 2 1 36 36 H 0.97001 * 119.99748 * 334.93351 * 7 5 4 37 37 H 1.08003 * 119.34797 * 0.02562 * 11 10 8 38 38 H 1.08001 * 119.54038 * 179.74333 * 13 12 11 39 39 H 1.08001 * 120.25026 * 0.04742 * 15 14 13 40 40 H 1.08001 * 119.44588 * 180.02562 * 16 15 14 41 41 H 1.07994 * 119.52772 * 180.02562 * 17 16 15 42 42 H 1.08005 * 120.27705 * 179.97438 * 18 17 16 43 43 H 1.09004 * 109.49599 * 178.68183 * 20 5 4 44 44 H 1.08999 * 109.49891 * 58.58386 * 20 5 4 45 45 H 1.08993 * 109.59025 * 294.84561 * 21 20 5 46 46 H 1.09004 * 109.70226 * 174.48951 * 21 20 5 47 47 H 0.97003 * 120.00561 * 5.76988 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0383 -0.7239 1.2455 5 6 1.6409 -2.2000 1.1726 6 1 0.5564 -2.2809 1.0994 7 7 2.1014 -2.8896 2.3804 8 6 1.4758 -4.0081 2.7977 9 8 0.5295 -4.4452 2.1714 10 6 1.9395 -4.7025 4.0129 11 6 3.0224 -4.2283 4.7432 12 7 3.4375 -4.8458 5.8359 13 6 2.8855 -5.9378 6.3091 14 6 1.7858 -6.5273 5.6657 15 6 1.1756 -7.6956 6.1490 16 6 0.1113 -8.2218 5.4810 17 6 -0.3820 -7.6204 4.3255 18 6 0.1870 -6.4844 3.8282 19 6 1.2801 -5.9182 4.4884 20 6 2.2843 -2.8431 -0.0582 21 6 1.7740 -2.1421 -1.3211 22 7 2.0226 -0.6996 -1.1945 23 6 2.7052 -0.0210 -2.1685 24 1 3.2873 0.8517 -1.9118 25 6 2.6490 -0.4549 -3.4860 26 7 1.6257 -1.1718 -3.8996 27 14 4.0259 -0.0214 -4.6716 28 1 3.7298 -0.6000 -6.0067 29 1 4.1351 1.4552 -4.7846 30 1 5.3075 -0.5753 -4.1657 31 1 -0.3634 -1.0276 0.0063 32 1 -0.3633 0.5194 0.8867 33 1 -0.3633 0.5084 -0.8931 34 1 1.5987 -0.2724 2.1349 35 1 3.1241 -0.6413 1.2936 36 1 2.8564 -2.5412 2.8798 37 1 3.5324 -3.3349 4.4140 38 1 3.2823 -6.3893 7.2064 39 1 1.5469 -8.1733 7.0436 40 1 -0.3579 -9.1204 5.8537 41 1 -1.2273 -8.0592 3.8164 42 1 -0.2040 -6.0273 2.9311 43 1 2.0200 -3.8999 -0.0966 44 1 3.3678 -2.7405 0.0022 45 1 0.7043 -2.3203 -1.4310 46 1 2.3004 -2.5283 -2.1940 47 1 0.8715 -1.3264 -3.3094 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000948060313.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:18:15 Heat of formation + Delta-G solvation = 18.368656 kcal Electronic energy + Delta-G solvation = -29112.581901 eV Core-core repulsion = 25259.610655 eV Total energy + Delta-G solvation = -3852.971247 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.00245 -40.81865 -39.42128 -38.37497 -36.29370 -34.58970 -33.84111 -32.65284 -32.19431 -31.47070 -30.34249 -28.62145 -26.42581 -25.78606 -24.53808 -24.11643 -23.66711 -23.05248 -21.85459 -20.33388 -19.47273 -19.02688 -18.46515 -18.39266 -17.38389 -16.75542 -16.41238 -16.25194 -15.94063 -15.84515 -15.54898 -15.42018 -15.17983 -15.04492 -14.77919 -14.66853 -14.41123 -14.13053 -13.85264 -13.71120 -13.46464 -13.19684 -12.93802 -12.82217 -12.67385 -12.57179 -12.37286 -12.36068 -11.99230 -11.94055 -11.80344 -11.51267 -11.22235 -11.13670 -11.01850 -10.48125 -10.43373 -10.20085 -10.10575 -9.16628 -8.93497 -8.23419 -5.40118 -1.00133 -0.15952 0.63399 1.58108 1.65698 1.70418 1.84021 1.95273 2.16453 2.65738 3.03203 3.19180 3.22919 3.45322 3.48104 3.60250 3.67832 3.70964 3.85121 3.91787 3.98188 4.15778 4.25053 4.26464 4.29562 4.36705 4.47065 4.53213 4.57236 4.59328 4.70380 4.73400 4.75495 4.94655 4.95807 5.00962 5.02633 5.10472 5.14292 5.19942 5.24020 5.37763 5.39519 5.49517 5.51542 5.56427 5.87818 5.88301 6.39210 6.41990 6.79049 7.07247 7.09620 7.78471 8.24644 9.02015 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.020077 B = 0.002490 C = 0.002433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1394.328857 B =11240.528446 C =11504.482167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.163 3.837 3 H 0.067 0.933 4 C -0.119 4.119 5 C 0.164 3.836 6 H 0.069 0.931 7 N -0.704 5.704 8 C 0.563 3.437 9 O -0.570 6.570 10 C -0.203 4.203 11 C 0.132 3.868 12 N -0.519 5.519 13 C 0.192 3.808 14 C -0.139 4.139 15 C -0.072 4.072 16 C -0.125 4.125 17 C -0.089 4.089 18 C -0.152 4.152 19 C -0.009 4.009 20 C -0.128 4.128 21 C 0.166 3.834 22 N -0.606 5.606 23 C -0.350 4.350 24 H 0.056 0.944 25 C -0.078 4.078 26 N -0.946 5.946 27 Si 1.114 2.886 28 H -0.296 1.296 29 H -0.274 1.274 30 H -0.280 1.280 31 H 0.037 0.963 32 H 0.077 0.923 33 H 0.028 0.972 34 H 0.094 0.906 35 H 0.073 0.927 36 H 0.412 0.588 37 H 0.177 0.823 38 H 0.211 0.789 39 H 0.179 0.821 40 H 0.163 0.837 41 H 0.143 0.857 42 H 0.134 0.866 43 H 0.047 0.953 44 H 0.062 0.938 45 H -0.001 1.001 46 H 0.042 0.958 47 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.223 -12.051 26.360 29.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.056 3.944 3 H 0.085 0.915 4 C -0.158 4.158 5 C 0.060 3.940 6 H 0.087 0.913 7 N -0.355 5.355 8 C 0.351 3.649 9 O -0.452 6.452 10 C -0.208 4.208 11 C -0.012 4.012 12 N -0.227 5.227 13 C 0.022 3.978 14 C -0.141 4.141 15 C -0.092 4.092 16 C -0.142 4.142 17 C -0.108 4.108 18 C -0.170 4.170 19 C -0.015 4.015 20 C -0.169 4.169 21 C 0.040 3.960 22 N -0.330 5.330 23 C -0.480 4.480 24 H 0.074 0.926 25 C -0.274 4.274 26 N -0.587 5.587 27 Si 0.938 3.062 28 H -0.222 1.222 29 H -0.199 1.199 30 H -0.206 1.206 31 H 0.056 0.944 32 H 0.096 0.904 33 H 0.047 0.953 34 H 0.112 0.888 35 H 0.092 0.908 36 H 0.250 0.750 37 H 0.193 0.807 38 H 0.227 0.773 39 H 0.197 0.803 40 H 0.180 0.820 41 H 0.160 0.840 42 H 0.152 0.848 43 H 0.065 0.935 44 H 0.080 0.920 45 H 0.017 0.983 46 H 0.061 0.939 47 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 1.865 -12.039 24.687 27.529 hybrid contribution -1.446 0.197 0.311 1.492 sum 0.419 -11.842 24.998 27.664 Atomic orbital electron populations 1.22217 0.98015 1.00452 1.00782 1.20600 0.92239 0.95422 0.86141 0.91461 1.22069 1.02052 0.92745 0.98964 1.20736 0.98529 0.92001 0.82769 0.91317 1.45944 1.35116 1.26435 1.27972 1.18223 0.82177 0.80455 0.84009 1.90641 1.29915 1.66116 1.58485 1.21810 1.01535 0.98997 0.98465 1.23046 0.90922 0.98026 0.89195 1.67253 1.31382 1.10689 1.13342 1.24049 0.88071 0.88402 0.97308 1.19328 0.99602 0.99063 0.96074 1.21483 0.94650 0.92666 1.00360 1.21397 0.96924 1.01203 0.94701 1.21509 0.99220 0.93984 0.96131 1.21678 0.96206 0.97537 1.01571 1.19188 0.94933 0.92799 0.94538 1.22242 1.00479 0.98320 0.95812 1.20602 0.95552 0.84437 0.95446 1.44387 1.64983 1.02793 1.20797 1.20217 1.24803 1.13813 0.89164 0.92647 1.27197 1.02677 0.99688 0.97830 1.70891 1.06237 1.43628 1.37991 0.82872 0.73134 0.76415 0.73730 1.22244 1.19934 1.20599 0.94409 0.90442 0.95322 0.88784 0.90797 0.75044 0.80651 0.77290 0.80343 0.81967 0.83952 0.84819 0.93451 0.91971 0.98343 0.93926 0.93693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.86 9.02 71.98 0.65 -5.21 16 2 C 0.16 6.43 3.27 44.83 0.15 6.57 16 3 H 0.07 2.66 7.93 -2.39 -0.02 2.64 16 4 C -0.12 -3.66 4.99 30.53 0.15 -3.51 16 5 C 0.16 5.50 2.21 45.02 0.10 5.60 16 6 H 0.07 2.63 5.93 -2.38 -0.01 2.62 16 7 N -0.70 -19.13 5.03 -445.64 -2.24 -21.37 16 8 C 0.56 17.39 7.74 86.67 0.67 18.07 16 9 O -0.57 -21.90 13.40 -4.02 -0.05 -21.95 16 10 C -0.20 -5.25 6.07 -18.60 -0.11 -5.36 16 11 C 0.13 2.73 10.71 84.81 0.91 3.63 16 12 N -0.52 -9.90 10.22 -193.72 -1.98 -11.88 16 13 C 0.19 2.74 11.00 85.31 0.94 3.67 16 14 C -0.14 -2.40 5.74 -21.33 -0.12 -2.52 16 15 C -0.07 -0.78 9.82 22.33 0.22 -0.56 16 16 C -0.12 -1.48 9.94 22.05 0.22 -1.27 16 17 C -0.09 -1.63 9.96 22.10 0.22 -1.41 16 18 C -0.15 -3.96 9.32 22.20 0.21 -3.75 16 19 C -0.01 -0.24 5.90 -19.95 -0.12 -0.35 16 20 C -0.13 -5.15 5.65 30.67 0.17 -4.98 16 21 C 0.17 8.21 4.29 86.36 0.37 8.58 16 22 N -0.61 -29.99 2.54 -676.04 -1.72 -31.71 16 23 C -0.35 -19.41 9.48 84.04 0.80 -18.61 16 24 H 0.06 3.03 7.94 -2.91 -0.02 3.00 16 25 C -0.08 -4.46 4.69 84.87 0.40 -4.06 16 26 N -0.95 -58.95 12.45 21.65 0.27 -58.68 16 27 Si 1.11 51.41 29.98 68.60 2.06 53.46 16 28 H -0.30 -14.08 7.11 99.48 0.71 -13.37 16 29 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 30 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 31 H 0.04 1.49 5.74 -2.39 -0.01 1.47 16 32 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 33 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 34 H 0.09 2.30 8.14 -2.39 -0.02 2.28 16 35 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 36 H 0.41 8.27 6.71 -92.71 -0.62 7.65 16 37 H 0.18 2.68 6.44 -2.91 -0.02 2.66 16 38 H 0.21 0.95 8.06 -2.91 -0.02 0.93 16 39 H 0.18 0.33 8.06 -2.91 -0.02 0.31 16 40 H 0.16 0.80 8.06 -2.91 -0.02 0.78 16 41 H 0.14 2.03 8.06 -2.91 -0.02 2.01 16 42 H 0.13 4.30 5.24 -2.91 -0.02 4.29 16 43 H 0.05 1.95 8.14 -2.38 -0.02 1.93 16 44 H 0.06 2.45 8.14 -2.39 -0.02 2.43 16 45 H 0.00 -0.07 7.23 -2.39 -0.02 -0.09 16 46 H 0.04 2.40 6.38 -2.38 -0.02 2.38 16 47 H 0.25 16.19 6.71 -92.71 -0.62 15.57 16 Total: -1.00 -77.55 372.09 2.68 -74.87 By element: Atomic # 1 Polarization: 22.17 SS G_CDS: 0.53 Total: 22.69 kcal Atomic # 6 Polarization: -11.26 SS G_CDS: 5.82 Total: -5.45 kcal Atomic # 7 Polarization: -117.96 SS G_CDS: -5.67 Total: -123.64 kcal Atomic # 8 Polarization: -21.90 SS G_CDS: -0.05 Total: -21.95 kcal Atomic # 14 Polarization: 51.41 SS G_CDS: 2.06 Total: 53.46 kcal Total: -77.55 2.68 -74.87 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000948060313.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.243 kcal (2) G-P(sol) polarization free energy of solvation -77.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.875 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds