Wall clock time and date at job start Tue Mar 31 2020 22:18:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 109.69747 * 2 1 4 4 C 1.53191 * 109.58794 * 239.64359 * 2 1 3 5 5 C 1.53040 * 109.31227 * 185.57649 * 4 2 1 6 6 H 1.09007 * 109.46271 * 301.34902 * 5 4 2 7 7 N 1.46498 * 109.46216 * 181.37520 * 5 4 2 8 8 C 1.34768 * 120.00355 * 155.00443 * 7 5 4 9 9 O 1.21604 * 119.99857 * 359.97438 * 8 7 5 10 10 C 1.47443 * 120.00527 * 179.97438 * 8 7 5 11 11 C 1.38955 * 121.16651 * 359.71525 * 10 8 7 12 12 N 1.32200 * 121.31599 * 179.73214 * 11 10 8 13 13 C 1.31188 * 123.69791 * 0.59347 * 12 11 10 14 14 C 1.40389 * 120.91594 * 359.67735 * 13 12 11 15 15 C 1.40386 * 122.14218 * 179.97438 * 14 13 12 16 16 C 1.36232 * 119.48737 * 180.02562 * 15 14 13 17 17 C 1.39291 * 121.10458 * 0.04062 * 16 15 14 18 18 C 1.36445 * 120.94671 * 0.02562 * 17 16 15 19 19 C 1.39691 * 119.43495 * 359.96989 * 18 17 16 20 20 C 1.53039 * 109.53745 * 61.36624 * 5 4 2 21 21 C 1.53635 * 109.24207 * 298.51014 * 20 5 4 22 22 N 1.46924 * 109.58514 * 120.35125 * 2 1 3 23 23 C 1.36934 * 120.63340 * 353.37717 * 22 2 1 24 24 H 1.08005 * 119.99813 * 31.00933 * 23 22 2 25 25 C 1.38815 * 120.00259 * 211.00419 * 23 22 2 26 26 N 1.31619 * 119.99802 * 197.66804 * 25 23 22 27 27 Si 1.86790 * 119.99758 * 17.67045 * 25 23 22 28 28 H 1.48505 * 109.47475 * 273.09059 * 27 25 23 29 29 H 1.48497 * 109.47422 * 33.09164 * 27 25 23 30 30 H 1.48507 * 109.47101 * 153.09271 * 27 25 23 31 31 H 1.08995 * 109.47479 * 299.64639 * 1 2 3 32 32 H 1.09003 * 109.46746 * 59.64711 * 1 2 3 33 33 H 1.09006 * 109.46605 * 179.64384 * 1 2 3 34 34 H 1.08992 * 109.50117 * 305.52866 * 4 2 1 35 35 H 1.09004 * 109.49478 * 65.62713 * 4 2 1 36 36 H 0.97000 * 119.99481 * 334.99915 * 7 5 4 37 37 H 1.07998 * 119.33855 * 0.02562 * 11 10 8 38 38 H 1.08000 * 119.54438 * 179.70340 * 13 12 11 39 39 H 1.08004 * 120.25905 * 0.02562 * 15 14 13 40 40 H 1.08001 * 119.45051 * 180.02562 * 16 15 14 41 41 H 1.07998 * 119.53132 * 179.97438 * 17 16 15 42 42 H 1.07998 * 120.28153 * 179.97438 * 18 17 16 43 43 H 1.09000 * 109.50240 * 58.58336 * 20 5 4 44 44 H 1.09002 * 109.50016 * 178.68690 * 20 5 4 45 45 H 1.08994 * 109.73819 * 295.11914 * 21 20 5 46 46 H 1.08997 * 109.65872 * 174.54997 * 21 20 5 47 47 H 0.96999 * 119.99714 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8974 1.0262 0.0000 4 6 2.0436 -0.7294 -1.2454 5 6 3.5675 -0.8479 -1.1701 6 1 4.0062 0.1475 -1.0992 7 7 4.0653 -1.5159 -2.3751 8 6 5.3295 -1.3025 -2.7905 9 8 6.0569 -0.5550 -2.1653 10 6 5.8307 -1.9752 -4.0030 11 6 5.0225 -2.8386 -4.7326 12 7 5.4671 -3.4392 -5.8231 13 6 6.6819 -3.2866 -6.2942 14 6 7.6046 -2.4462 -5.6513 15 6 8.9108 -2.2644 -6.1325 16 6 9.7620 -1.4361 -5.4653 17 6 9.3585 -0.7666 -4.3124 18 6 8.0969 -0.9214 -3.8164 19 6 7.1984 -1.7633 -4.4760 20 6 3.9569 -1.6656 0.0635 21 6 3.4656 -0.9418 1.3265 22 7 2.0225 -0.6995 1.1945 23 6 1.1538 -1.1126 2.1690 24 1 0.1453 -1.3977 1.9078 25 6 1.5692 -1.1651 3.4925 26 7 0.8869 -1.8714 4.3688 27 14 3.0964 -0.2334 4.0296 28 1 4.2961 -1.0809 3.8104 29 1 3.2202 1.0146 3.2344 30 1 2.9874 0.1068 5.4710 31 1 -0.3634 0.5083 0.8931 32 1 -0.3633 0.5193 -0.8868 33 1 -0.3633 -1.0277 -0.0064 34 1 1.6031 -1.7253 -1.2913 35 1 1.7661 -0.1668 -2.1368 36 1 3.4849 -2.1119 -2.8740 37 1 4.0093 -3.0188 -4.4048 38 1 6.9762 -3.8144 -7.1893 39 1 9.2383 -2.7772 -7.0248 40 1 10.7667 -1.2964 -5.8363 41 1 10.0545 -0.1163 -3.8034 42 1 7.7955 -0.3973 -2.9214 43 1 3.4984 -2.6528 0.0054 44 1 5.0413 -1.7695 0.1038 45 1 3.9877 0.0091 1.4324 46 1 3.6532 -1.5636 2.2019 47 1 1.1774 -1.9084 5.2936 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000948060315.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:18:24 Heat of formation + Delta-G solvation = 46.912468 kcal Electronic energy + Delta-G solvation = -29029.596877 eV Core-core repulsion = 25177.863383 eV Total energy + Delta-G solvation = -3851.733494 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.17692 -39.63440 -37.91540 -37.66946 -34.85340 -33.14992 -32.40786 -31.74177 -31.48849 -30.59283 -29.44732 -26.62567 -25.48014 -24.44857 -23.80972 -23.08050 -22.57343 -21.24657 -20.47537 -19.48554 -18.31300 -17.72977 -17.67740 -16.46880 -16.27629 -15.87364 -15.29787 -15.17006 -15.16121 -14.66122 -14.46814 -14.20793 -14.06487 -13.77968 -13.51797 -13.45027 -13.19233 -13.04456 -12.50766 -12.49595 -12.23380 -11.99156 -11.85786 -11.72567 -11.36669 -11.18165 -11.05123 -10.60903 -10.41584 -10.36784 -10.24776 -10.19551 -10.06108 -9.81393 -9.52860 -9.42324 -9.40756 -8.94790 -8.59573 -8.41616 -6.93332 -5.93757 -3.33881 -0.25623 0.55624 1.37236 2.55364 3.00467 3.03912 3.33949 3.50041 3.53276 3.78343 3.90309 4.18170 4.34120 4.36096 4.53053 4.54189 4.70003 4.83724 4.87678 4.91936 5.09454 5.15636 5.27340 5.30119 5.38366 5.42975 5.58798 5.63104 5.73143 5.75388 5.95964 5.98496 6.04336 6.05971 6.17338 6.18459 6.22506 6.27154 6.34578 6.39473 6.47798 6.53397 6.62394 6.68460 6.77367 6.94588 7.04381 7.45172 7.53229 7.99618 8.14191 8.36383 8.94566 9.73104 10.11058 11.21879 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.019038 B = 0.002674 C = 0.002476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1470.402924 B =10468.046908 C =11304.508013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.175 3.825 3 H 0.032 0.968 4 C -0.137 4.137 5 C 0.151 3.849 6 H 0.085 0.915 7 N -0.715 5.715 8 C 0.565 3.435 9 O -0.533 6.533 10 C -0.169 4.169 11 C 0.120 3.880 12 N -0.497 5.497 13 C 0.174 3.826 14 C -0.122 4.122 15 C -0.091 4.091 16 C -0.118 4.118 17 C -0.099 4.099 18 C -0.109 4.109 19 C 0.011 3.989 20 C -0.140 4.140 21 C 0.128 3.872 22 N -0.603 5.603 23 C -0.259 4.259 24 H 0.091 0.909 25 C 0.025 3.975 26 N -0.911 5.911 27 Si 0.883 3.117 28 H -0.286 1.286 29 H -0.272 1.272 30 H -0.304 1.304 31 H 0.066 0.934 32 H 0.040 0.960 33 H 0.058 0.942 34 H 0.069 0.931 35 H 0.060 0.940 36 H 0.396 0.604 37 H 0.159 0.841 38 H 0.166 0.834 39 H 0.135 0.865 40 H 0.127 0.873 41 H 0.129 0.871 42 H 0.166 0.834 43 H 0.066 0.934 44 H 0.057 0.943 45 H 0.026 0.974 46 H 0.078 0.922 47 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.826 -0.669 -23.444 27.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.068 3.932 3 H 0.049 0.951 4 C -0.176 4.176 5 C 0.048 3.952 6 H 0.103 0.897 7 N -0.365 5.365 8 C 0.351 3.649 9 O -0.411 6.411 10 C -0.175 4.175 11 C -0.025 4.025 12 N -0.204 5.204 13 C 0.002 3.998 14 C -0.124 4.124 15 C -0.111 4.111 16 C -0.136 4.136 17 C -0.118 4.118 18 C -0.127 4.127 19 C 0.006 3.994 20 C -0.181 4.181 21 C 0.002 3.998 22 N -0.327 5.327 23 C -0.387 4.387 24 H 0.109 0.891 25 C -0.174 4.174 26 N -0.554 5.554 27 Si 0.714 3.286 28 H -0.214 1.214 29 H -0.197 1.197 30 H -0.232 1.232 31 H 0.085 0.915 32 H 0.059 0.941 33 H 0.077 0.923 34 H 0.088 0.912 35 H 0.079 0.921 36 H 0.231 0.769 37 H 0.176 0.824 38 H 0.183 0.817 39 H 0.153 0.847 40 H 0.145 0.855 41 H 0.147 0.853 42 H 0.184 0.816 43 H 0.085 0.915 44 H 0.076 0.924 45 H 0.044 0.956 46 H 0.096 0.904 47 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 13.568 -0.683 -23.113 26.810 hybrid contribution 1.264 0.617 0.603 1.531 sum 14.833 -0.066 -22.511 26.958 Atomic orbital electron populations 1.21797 0.94894 1.01984 1.00627 1.20378 0.93799 0.93311 0.85681 0.95056 1.22400 0.93232 1.02215 0.99784 1.21070 0.94639 0.96687 0.82851 0.89666 1.46213 1.12756 1.48416 1.29073 1.17811 0.82193 0.81318 0.83554 1.90642 1.55713 1.37697 1.57084 1.21996 0.94942 1.02183 0.98339 1.22771 0.99212 0.90811 0.89687 1.67108 1.16775 1.23291 1.13204 1.23293 0.87620 0.91789 0.97088 1.19020 0.96389 1.00304 0.96684 1.20952 0.91868 0.98424 0.99833 1.21008 1.00061 0.96872 0.95691 1.21213 0.96397 0.98499 0.95677 1.21853 0.92633 0.97018 1.01164 1.18930 0.92115 0.95072 0.93285 1.22473 1.00085 0.99963 0.95562 1.21454 0.85123 0.97183 0.96085 1.44502 1.01908 1.65677 1.20657 1.18905 0.96528 1.37980 0.85317 0.89147 1.25363 0.97599 0.98651 0.95785 1.69798 1.41128 1.40780 1.03656 0.86992 0.83372 0.81574 0.76666 1.21415 1.19714 1.23241 0.91504 0.94075 0.92339 0.91208 0.92098 0.76875 0.82438 0.81676 0.84747 0.85480 0.85309 0.81643 0.91518 0.92400 0.95586 0.90430 0.92778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.38 7.96 37.16 0.30 -2.09 16 2 C 0.18 3.29 3.49 -67.60 -0.24 3.05 16 3 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 4 C -0.14 -2.07 4.84 -26.61 -0.13 -2.20 16 5 C 0.15 2.37 2.41 -67.89 -0.16 2.20 16 6 H 0.09 1.47 7.58 -51.93 -0.39 1.08 16 7 N -0.71 -9.25 5.03 -54.84 -0.28 -9.53 16 8 C 0.56 8.03 7.73 -12.52 -0.10 7.93 16 9 O -0.53 -9.08 13.40 5.27 0.07 -9.01 16 10 C -0.17 -2.09 6.07 -102.66 -0.62 -2.72 16 11 C 0.12 1.27 10.71 -17.13 -0.18 1.09 16 12 N -0.50 -5.25 10.22 -12.58 -0.13 -5.38 16 13 C 0.17 1.51 11.00 -17.02 -0.19 1.32 16 14 C -0.12 -1.18 5.74 -106.89 -0.61 -1.79 16 15 C -0.09 -0.66 9.82 -39.50 -0.39 -1.05 16 16 C -0.12 -0.87 9.94 -39.91 -0.40 -1.26 16 17 C -0.10 -0.90 9.96 -39.84 -0.40 -1.29 16 18 C -0.11 -1.30 9.33 -39.69 -0.37 -1.67 16 19 C 0.01 0.14 5.90 -104.75 -0.62 -0.48 16 20 C -0.14 -2.56 5.67 -26.38 -0.15 -2.71 16 21 C 0.13 2.80 4.22 -3.48 -0.01 2.78 16 22 N -0.60 -13.82 2.72 -164.51 -0.45 -14.27 16 23 C -0.26 -6.96 8.99 -15.06 -0.14 -7.09 16 24 H 0.09 2.56 6.46 -52.48 -0.34 2.22 16 25 C 0.02 0.71 5.26 -17.43 -0.09 0.62 16 26 N -0.91 -27.62 13.97 55.49 0.78 -26.85 16 27 Si 0.88 22.53 24.33 -169.99 -4.14 18.39 16 28 H -0.29 -7.09 6.42 56.52 0.36 -6.73 16 29 H -0.27 -6.88 6.89 56.52 0.39 -6.49 16 30 H -0.30 -7.91 7.11 56.52 0.40 -7.51 16 31 H 0.07 1.30 7.64 -51.93 -0.40 0.90 16 32 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.06 1.07 7.44 -51.93 -0.39 0.68 16 34 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 35 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.40 4.01 6.71 -40.82 -0.27 3.74 16 37 H 0.16 1.29 6.44 -52.49 -0.34 0.95 16 38 H 0.17 0.81 8.06 -52.49 -0.42 0.39 16 39 H 0.13 0.54 8.06 -52.48 -0.42 0.11 16 40 H 0.13 0.59 8.06 -52.49 -0.42 0.16 16 41 H 0.13 0.90 8.06 -52.49 -0.42 0.48 16 42 H 0.17 2.27 5.24 -52.49 -0.28 2.00 16 43 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 44 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 45 H 0.03 0.58 7.15 -51.93 -0.37 0.21 16 46 H 0.08 1.87 4.60 -51.93 -0.24 1.63 16 47 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 LS Contribution 367.78 15.07 5.54 5.54 Total: -1.00 -33.06 367.78 -9.53 -42.59 By element: Atomic # 1 Polarization: 10.29 SS G_CDS: -6.43 Total: 3.86 kcal Atomic # 6 Polarization: -0.85 SS G_CDS: -4.50 Total: -5.35 kcal Atomic # 7 Polarization: -55.95 SS G_CDS: -0.08 Total: -56.03 kcal Atomic # 8 Polarization: -9.08 SS G_CDS: 0.07 Total: -9.01 kcal Atomic # 14 Polarization: 22.53 SS G_CDS: -4.14 Total: 18.39 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -33.06 -9.53 -42.59 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000948060315.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.502 kcal (2) G-P(sol) polarization free energy of solvation -33.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.589 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds