Wall clock time and date at job start Tue Mar 31 2020 22:18:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09007 * 109.69444 * 2 1 4 4 C 1.53192 * 109.58855 * 120.35187 * 2 1 3 5 5 C 1.53036 * 109.31054 * 174.42326 * 4 2 1 6 6 H 1.09004 * 109.44950 * 58.65440 * 5 4 2 7 7 N 1.46503 * 109.46048 * 178.61758 * 5 4 2 8 8 C 1.34778 * 120.00248 * 205.07104 * 7 5 4 9 9 O 1.21602 * 119.99686 * 359.97438 * 8 7 5 10 10 C 1.47439 * 120.00059 * 180.02562 * 8 7 5 11 11 C 1.38949 * 121.17078 * 359.97438 * 10 8 7 12 12 N 1.32196 * 121.31365 * 179.97438 * 11 10 8 13 13 C 1.31191 * 123.70191 * 0.02562 * 12 11 10 14 14 C 1.40387 * 120.91782 * 0.02654 * 13 12 11 15 15 C 1.40386 * 122.15413 * 179.97438 * 14 13 12 16 16 C 1.36238 * 119.48665 * 179.97438 * 15 14 13 17 17 C 1.39289 * 121.10549 * 0.28270 * 16 15 14 18 18 C 1.36444 * 120.94787 * 359.42791 * 17 16 15 19 19 C 1.39691 * 119.42987 * 0.55731 * 18 17 16 20 20 C 1.53045 * 109.53955 * 298.63891 * 5 4 2 21 21 C 1.53191 * 109.31311 * 61.36572 * 20 5 4 22 22 N 1.46918 * 109.58607 * 239.64788 * 2 1 3 23 23 C 1.36939 * 120.63276 * 6.57823 * 22 2 1 24 24 H 1.07994 * 119.99806 * 330.17193 * 23 22 2 25 25 C 1.38813 * 120.00173 * 150.17493 * 23 22 2 26 26 N 1.31622 * 119.99950 * 344.50023 * 25 23 22 27 27 Si 1.86793 * 120.00094 * 164.50171 * 25 23 22 28 28 H 1.48503 * 109.47040 * 60.00050 * 27 25 23 29 29 H 1.48503 * 109.47083 * 180.02562 * 27 25 23 30 30 H 1.48497 * 109.47292 * 300.00044 * 27 25 23 31 31 H 1.09001 * 109.46683 * 180.35480 * 1 2 3 32 32 H 1.09000 * 109.47002 * 300.35155 * 1 2 3 33 33 H 1.09000 * 109.47505 * 60.35442 * 1 2 3 34 34 H 1.09003 * 109.49354 * 54.47854 * 4 2 1 35 35 H 1.08998 * 109.49976 * 294.37878 * 4 2 1 36 36 H 0.97002 * 119.99570 * 25.07563 * 7 5 4 37 37 H 1.07997 * 119.34542 * 359.97438 * 11 10 8 38 38 H 1.08003 * 119.54522 * 180.02562 * 13 12 11 39 39 H 1.07999 * 120.26027 * 359.96015 * 15 14 13 40 40 H 1.08004 * 119.44405 * 179.97438 * 16 15 14 41 41 H 1.08001 * 119.52661 * 179.72325 * 17 16 15 42 42 H 1.07998 * 120.28397 * 180.26277 * 18 17 16 43 43 H 1.09008 * 109.49504 * 181.31752 * 20 5 4 44 44 H 1.08998 * 109.49572 * 301.40941 * 20 5 4 45 45 H 1.09004 * 109.58720 * 65.15023 * 21 20 5 46 46 H 1.08997 * 109.58821 * 185.57410 * 21 20 5 47 47 H 0.96996 * 120.00317 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8974 1.0263 0.0000 4 6 2.0436 -0.7293 1.2454 5 6 3.5675 -0.8478 1.1701 6 1 4.0059 0.1477 1.0992 7 7 4.0653 -1.5156 2.3753 8 6 5.3291 -1.3008 2.7915 9 8 6.0563 -0.5532 2.1663 10 6 5.8303 -1.9733 4.0041 11 6 5.0206 -2.8327 4.7366 12 7 5.4671 -3.4376 5.8239 13 6 6.6816 -3.2838 6.2957 14 6 7.6038 -2.4424 5.6534 15 6 8.9093 -2.2585 6.1358 16 6 9.7599 -1.4292 5.4689 17 6 9.3543 -0.7556 4.3192 18 6 8.0948 -0.9157 3.8196 19 6 7.1970 -1.7588 4.4788 20 6 3.9570 -1.6655 -0.0636 21 6 3.4651 -0.9468 -1.3238 22 7 2.0225 -0.6994 -1.1945 23 6 1.1536 -1.1134 -2.1685 24 1 0.1398 -1.3808 -1.9097 25 6 1.5759 -1.1894 -3.4887 26 7 2.6864 -0.5884 -3.8601 27 14 0.5681 -2.1447 -4.7381 28 1 -0.7925 -1.5569 -4.8300 29 1 1.2294 -2.0735 -6.0659 30 1 0.4667 -3.5635 -4.3117 31 1 -0.3633 -1.0277 0.0064 32 1 -0.3633 0.5193 0.8868 33 1 -0.3634 0.5083 -0.8931 34 1 1.6031 -1.7253 1.2913 35 1 1.7661 -0.1668 2.1368 36 1 3.4853 -2.1123 2.8738 37 1 4.0062 -3.0102 4.4111 38 1 6.9761 -3.8119 7.1906 39 1 9.2367 -2.7703 7.0286 40 1 10.7640 -1.2879 5.8408 41 1 10.0483 -0.1007 3.8132 42 1 7.7930 -0.3914 2.9250 43 1 5.0414 -1.7693 -0.1038 44 1 3.4985 -2.6527 -0.0053 45 1 3.9903 0.0023 -1.4317 46 1 3.6519 -1.5715 -2.1972 47 1 2.9818 -0.6418 -4.7824 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000948060316.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:18:28 Heat of formation + Delta-G solvation = 41.559861 kcal Electronic energy + Delta-G solvation = -28926.283815 eV Core-core repulsion = 25074.318214 eV Total energy + Delta-G solvation = -3851.965601 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -41.10478 -39.49075 -37.65735 -37.59882 -34.69327 -33.07995 -32.41475 -31.46313 -31.40952 -30.14129 -29.13825 -26.42293 -25.43340 -24.54405 -23.75024 -23.03787 -21.96464 -21.18503 -20.27226 -19.32861 -18.24218 -17.64941 -17.60421 -16.35831 -16.13399 -15.69640 -15.17898 -15.10027 -15.04460 -14.53086 -14.14710 -14.01235 -13.91693 -13.71051 -13.42155 -13.31014 -13.01730 -12.79665 -12.68635 -12.43752 -12.17051 -11.68182 -11.60462 -11.23840 -11.09786 -10.94894 -10.88638 -10.66308 -10.36708 -10.28381 -10.18739 -10.13423 -10.04807 -9.75614 -9.59885 -9.36520 -9.30765 -8.81381 -8.44828 -8.33819 -6.63975 -5.77333 -3.21721 -0.19166 0.61330 1.43642 2.62312 3.09931 3.15531 3.38432 3.44698 3.45019 3.84930 3.96245 4.24236 4.40805 4.42043 4.49129 4.59221 4.77571 4.90642 4.98099 5.19386 5.24135 5.33759 5.38043 5.43479 5.48808 5.55968 5.68934 5.74463 5.82832 5.96719 6.08866 6.14075 6.18830 6.24289 6.30080 6.31191 6.39739 6.41478 6.49006 6.59465 6.64451 6.77386 6.85574 7.02170 7.09051 7.36745 7.56044 7.60035 7.68164 7.82493 8.26205 8.47236 9.22337 9.85835 10.43164 11.31448 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.020454 B = 0.002457 C = 0.002346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1368.594904 B =11393.253356 C =11932.095798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.172 3.828 3 H 0.027 0.973 4 C -0.135 4.135 5 C 0.151 3.849 6 H 0.084 0.916 7 N -0.715 5.715 8 C 0.563 3.437 9 O -0.531 6.531 10 C -0.167 4.167 11 C 0.117 3.883 12 N -0.497 5.497 13 C 0.172 3.828 14 C -0.121 4.121 15 C -0.092 4.092 16 C -0.118 4.118 17 C -0.099 4.099 18 C -0.108 4.108 19 C 0.011 3.989 20 C -0.147 4.147 21 C 0.176 3.824 22 N -0.587 5.587 23 C -0.253 4.253 24 H 0.069 0.931 25 C 0.004 3.996 26 N -0.902 5.902 27 Si 0.901 3.099 28 H -0.283 1.283 29 H -0.291 1.291 30 H -0.284 1.284 31 H 0.053 0.947 32 H 0.038 0.962 33 H 0.063 0.937 34 H 0.064 0.936 35 H 0.055 0.945 36 H 0.394 0.606 37 H 0.158 0.842 38 H 0.166 0.834 39 H 0.134 0.866 40 H 0.127 0.873 41 H 0.129 0.871 42 H 0.167 0.833 43 H 0.053 0.947 44 H 0.055 0.945 45 H 0.021 0.979 46 H 0.088 0.912 47 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.176 -3.435 21.542 24.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.064 3.936 3 H 0.045 0.955 4 C -0.175 4.175 5 C 0.048 3.952 6 H 0.102 0.898 7 N -0.365 5.365 8 C 0.349 3.651 9 O -0.410 6.410 10 C -0.172 4.172 11 C -0.027 4.027 12 N -0.204 5.204 13 C 0.000 4.000 14 C -0.124 4.124 15 C -0.112 4.112 16 C -0.136 4.136 17 C -0.119 4.119 18 C -0.126 4.126 19 C 0.005 3.995 20 C -0.187 4.187 21 C 0.050 3.950 22 N -0.311 5.311 23 C -0.382 4.382 24 H 0.087 0.913 25 C -0.195 4.195 26 N -0.546 5.546 27 Si 0.731 3.269 28 H -0.209 1.209 29 H -0.217 1.217 30 H -0.211 1.211 31 H 0.072 0.928 32 H 0.057 0.943 33 H 0.082 0.918 34 H 0.083 0.917 35 H 0.074 0.926 36 H 0.229 0.771 37 H 0.175 0.825 38 H 0.183 0.817 39 H 0.152 0.848 40 H 0.145 0.855 41 H 0.147 0.853 42 H 0.184 0.816 43 H 0.072 0.928 44 H 0.074 0.926 45 H 0.039 0.961 46 H 0.106 0.894 47 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 10.034 -3.386 21.201 23.699 hybrid contribution -0.094 -0.322 -0.853 0.917 sum 9.940 -3.708 20.348 22.948 Atomic orbital electron populations 1.21792 0.95714 1.01393 1.00389 1.20353 0.93106 0.93560 0.86569 0.95523 1.22401 0.93500 1.01766 0.99821 1.21119 0.94393 0.96811 0.82869 0.89780 1.46280 1.12707 1.48256 1.29211 1.17801 0.82294 0.81421 0.83551 1.90646 1.55674 1.37654 1.57029 1.22039 0.94896 1.02006 0.98276 1.22756 0.99216 0.90958 0.89762 1.67098 1.16765 1.23244 1.13279 1.23274 0.87673 0.91944 0.97094 1.19016 0.96365 1.00279 0.96693 1.20942 0.91900 0.98527 0.99820 1.21006 1.00017 0.96843 0.95732 1.21212 0.96427 0.98534 0.95693 1.21876 0.92624 0.96929 1.01121 1.18941 0.92163 0.95082 0.93286 1.22587 0.99793 0.99621 0.96728 1.20731 0.83286 0.97263 0.93760 1.44154 1.02952 1.64877 1.19068 1.19110 0.95199 1.37825 0.86089 0.91312 1.25112 0.97902 0.99502 0.97017 1.70010 1.24107 1.43657 1.16834 0.86403 0.79616 0.80200 0.80715 1.20895 1.21695 1.21090 0.92778 0.94301 0.91806 0.91711 0.92596 0.77125 0.82480 0.81739 0.84802 0.85518 0.85296 0.81556 0.92835 0.92601 0.96111 0.89359 0.93587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.45 7.95 37.16 0.30 -2.16 16 2 C 0.17 3.43 3.50 -67.60 -0.24 3.20 16 3 H 0.03 0.57 8.14 -51.92 -0.42 0.15 16 4 C -0.13 -2.20 4.84 -26.61 -0.13 -2.33 16 5 C 0.15 2.57 2.42 -67.89 -0.16 2.41 16 6 H 0.08 1.60 7.58 -51.93 -0.39 1.21 16 7 N -0.71 -9.99 5.03 -54.83 -0.28 -10.27 16 8 C 0.56 8.53 7.74 -12.51 -0.10 8.43 16 9 O -0.53 -9.62 13.40 5.28 0.07 -9.55 16 10 C -0.17 -2.18 6.07 -102.66 -0.62 -2.80 16 11 C 0.12 1.32 10.71 -17.13 -0.18 1.13 16 12 N -0.50 -5.49 10.22 -12.58 -0.13 -5.62 16 13 C 0.17 1.57 11.00 -17.02 -0.19 1.38 16 14 C -0.12 -1.23 5.74 -106.89 -0.61 -1.84 16 15 C -0.09 -0.71 9.82 -39.49 -0.39 -1.10 16 16 C -0.12 -0.92 9.94 -39.91 -0.40 -1.31 16 17 C -0.10 -0.95 9.96 -39.84 -0.40 -1.35 16 18 C -0.11 -1.35 9.32 -39.69 -0.37 -1.72 16 19 C 0.01 0.14 5.91 -104.74 -0.62 -0.48 16 20 C -0.15 -2.88 5.65 -26.61 -0.15 -3.03 16 21 C 0.18 4.20 5.28 -3.71 -0.02 4.18 16 22 N -0.59 -14.19 2.99 -164.78 -0.49 -14.68 16 23 C -0.25 -6.66 8.57 -15.06 -0.13 -6.79 16 24 H 0.07 1.76 6.24 -52.49 -0.33 1.43 16 25 C 0.00 0.10 4.94 -17.43 -0.09 0.01 16 26 N -0.90 -26.04 11.23 55.49 0.62 -25.42 16 27 Si 0.90 21.48 29.58 -169.99 -5.03 16.45 16 28 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 29 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 30 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 31 H 0.05 0.98 7.44 -51.93 -0.39 0.59 16 32 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.06 1.26 7.63 -51.93 -0.40 0.87 16 34 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 35 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.39 4.36 6.71 -40.82 -0.27 4.08 16 37 H 0.16 1.39 6.44 -52.49 -0.34 1.05 16 38 H 0.17 0.88 8.06 -52.48 -0.42 0.46 16 39 H 0.13 0.59 8.06 -52.49 -0.42 0.17 16 40 H 0.13 0.63 8.06 -52.48 -0.42 0.21 16 41 H 0.13 0.97 8.06 -52.49 -0.42 0.55 16 42 H 0.17 2.41 5.24 -52.49 -0.28 2.13 16 43 H 0.05 1.06 8.14 -51.92 -0.42 0.64 16 44 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 45 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 46 H 0.09 2.36 6.15 -51.93 -0.32 2.04 16 47 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 LS Contribution 374.06 15.07 5.64 5.64 Total: -1.00 -31.95 374.06 -10.58 -42.54 By element: Atomic # 1 Polarization: 11.59 SS G_CDS: -6.49 Total: 5.09 kcal Atomic # 6 Polarization: 0.31 SS G_CDS: -4.49 Total: -4.18 kcal Atomic # 7 Polarization: -55.71 SS G_CDS: -0.27 Total: -55.98 kcal Atomic # 8 Polarization: -9.62 SS G_CDS: 0.07 Total: -9.55 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.03 Total: 16.45 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -31.95 -10.58 -42.54 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000948060316.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.096 kcal (2) G-P(sol) polarization free energy of solvation -31.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.536 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds