Wall clock time and date at job start Tue Mar 31 2020 22:18:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09007 * 109.69444 * 2 1 4 4 C 1.53192 * 109.58855 * 120.35187 * 2 1 3 5 5 C 1.53036 * 109.31054 * 174.42326 * 4 2 1 6 6 H 1.09004 * 109.44950 * 58.65440 * 5 4 2 7 7 N 1.46503 * 109.46048 * 178.61758 * 5 4 2 8 8 C 1.34778 * 120.00248 * 205.07104 * 7 5 4 9 9 O 1.21602 * 119.99686 * 359.97438 * 8 7 5 10 10 C 1.47439 * 120.00059 * 180.02562 * 8 7 5 11 11 C 1.38949 * 121.17078 * 359.97438 * 10 8 7 12 12 N 1.32196 * 121.31365 * 179.97438 * 11 10 8 13 13 C 1.31191 * 123.70191 * 0.02562 * 12 11 10 14 14 C 1.40387 * 120.91782 * 0.02654 * 13 12 11 15 15 C 1.40386 * 122.15413 * 179.97438 * 14 13 12 16 16 C 1.36238 * 119.48665 * 179.97438 * 15 14 13 17 17 C 1.39289 * 121.10549 * 0.28270 * 16 15 14 18 18 C 1.36444 * 120.94787 * 359.42791 * 17 16 15 19 19 C 1.39691 * 119.42987 * 0.55731 * 18 17 16 20 20 C 1.53045 * 109.53955 * 298.63891 * 5 4 2 21 21 C 1.53191 * 109.31311 * 61.36572 * 20 5 4 22 22 N 1.46918 * 109.58607 * 239.64788 * 2 1 3 23 23 C 1.36939 * 120.63276 * 6.57823 * 22 2 1 24 24 H 1.07994 * 119.99806 * 330.17193 * 23 22 2 25 25 C 1.38813 * 120.00173 * 150.17493 * 23 22 2 26 26 N 1.31622 * 119.99950 * 344.50023 * 25 23 22 27 27 Si 1.86793 * 120.00094 * 164.50171 * 25 23 22 28 28 H 1.48503 * 109.47040 * 60.00050 * 27 25 23 29 29 H 1.48503 * 109.47083 * 180.02562 * 27 25 23 30 30 H 1.48497 * 109.47292 * 300.00044 * 27 25 23 31 31 H 1.09001 * 109.46683 * 180.35480 * 1 2 3 32 32 H 1.09000 * 109.47002 * 300.35155 * 1 2 3 33 33 H 1.09000 * 109.47505 * 60.35442 * 1 2 3 34 34 H 1.09003 * 109.49354 * 54.47854 * 4 2 1 35 35 H 1.08998 * 109.49976 * 294.37878 * 4 2 1 36 36 H 0.97002 * 119.99570 * 25.07563 * 7 5 4 37 37 H 1.07997 * 119.34542 * 359.97438 * 11 10 8 38 38 H 1.08003 * 119.54522 * 180.02562 * 13 12 11 39 39 H 1.07999 * 120.26027 * 359.96015 * 15 14 13 40 40 H 1.08004 * 119.44405 * 179.97438 * 16 15 14 41 41 H 1.08001 * 119.52661 * 179.72325 * 17 16 15 42 42 H 1.07998 * 120.28397 * 180.26277 * 18 17 16 43 43 H 1.09008 * 109.49504 * 181.31752 * 20 5 4 44 44 H 1.08998 * 109.49572 * 301.40941 * 20 5 4 45 45 H 1.09004 * 109.58720 * 65.15023 * 21 20 5 46 46 H 1.08997 * 109.58821 * 185.57410 * 21 20 5 47 47 H 0.96996 * 120.00317 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8974 1.0263 0.0000 4 6 2.0436 -0.7293 1.2454 5 6 3.5675 -0.8478 1.1701 6 1 4.0059 0.1477 1.0992 7 7 4.0653 -1.5156 2.3753 8 6 5.3291 -1.3008 2.7915 9 8 6.0563 -0.5532 2.1663 10 6 5.8303 -1.9733 4.0041 11 6 5.0206 -2.8327 4.7366 12 7 5.4671 -3.4376 5.8239 13 6 6.6816 -3.2838 6.2957 14 6 7.6038 -2.4424 5.6534 15 6 8.9093 -2.2585 6.1358 16 6 9.7599 -1.4292 5.4689 17 6 9.3543 -0.7556 4.3192 18 6 8.0948 -0.9157 3.8196 19 6 7.1970 -1.7588 4.4788 20 6 3.9570 -1.6655 -0.0636 21 6 3.4651 -0.9468 -1.3238 22 7 2.0225 -0.6994 -1.1945 23 6 1.1536 -1.1134 -2.1685 24 1 0.1398 -1.3808 -1.9097 25 6 1.5759 -1.1894 -3.4887 26 7 2.6864 -0.5884 -3.8601 27 14 0.5681 -2.1447 -4.7381 28 1 -0.7925 -1.5569 -4.8300 29 1 1.2294 -2.0735 -6.0659 30 1 0.4667 -3.5635 -4.3117 31 1 -0.3633 -1.0277 0.0064 32 1 -0.3633 0.5193 0.8868 33 1 -0.3634 0.5083 -0.8931 34 1 1.6031 -1.7253 1.2913 35 1 1.7661 -0.1668 2.1368 36 1 3.4853 -2.1123 2.8738 37 1 4.0062 -3.0102 4.4111 38 1 6.9761 -3.8119 7.1906 39 1 9.2367 -2.7703 7.0286 40 1 10.7640 -1.2879 5.8408 41 1 10.0483 -0.1007 3.8132 42 1 7.7930 -0.3914 2.9250 43 1 5.0414 -1.7693 -0.1038 44 1 3.4985 -2.6527 -0.0053 45 1 3.9903 0.0023 -1.4317 46 1 3.6519 -1.5715 -2.1972 47 1 2.9818 -0.6418 -4.7824 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000948060316.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:18:27 Heat of formation + Delta-G solvation = 21.909756 kcal Electronic energy + Delta-G solvation = -28927.135908 eV Core-core repulsion = 25074.318214 eV Total energy + Delta-G solvation = -3852.817693 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -41.96498 -40.68194 -39.19931 -38.35504 -36.18705 -34.32463 -33.86794 -32.94327 -32.17657 -31.55422 -30.33807 -28.00118 -26.84823 -25.85973 -24.51773 -24.09672 -23.48923 -22.46598 -21.64766 -20.95564 -19.09401 -18.67241 -18.41277 -18.16926 -17.26538 -16.88552 -16.67743 -16.20748 -15.96247 -15.76977 -15.61590 -15.37908 -15.04769 -14.96142 -14.71407 -14.59247 -14.34925 -14.23625 -13.68413 -13.33954 -13.17822 -12.96407 -12.91863 -12.73080 -12.69209 -12.63259 -12.41918 -12.36398 -12.13153 -11.85412 -11.72991 -11.53279 -11.33467 -11.11651 -11.00628 -10.55165 -10.40787 -10.14190 -10.07746 -9.14469 -8.64803 -7.84214 -5.31111 -0.97868 -0.14033 0.65447 1.47237 1.49661 1.55848 1.73429 1.99814 2.18984 2.52546 3.05272 3.21943 3.32030 3.49566 3.57030 3.64654 3.69808 3.83078 3.87214 3.99952 4.03977 4.24278 4.26825 4.31475 4.37066 4.49552 4.59222 4.60458 4.70245 4.73810 4.76260 4.80083 4.94444 5.02654 5.04392 5.05106 5.13742 5.16331 5.37115 5.39780 5.42856 5.50238 5.52044 5.55108 5.58928 5.69413 5.72725 5.89778 6.42838 6.46081 6.81189 7.14300 7.16673 7.88306 8.41694 9.23267 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.020454 B = 0.002457 C = 0.002346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1368.594904 B =11393.253356 C =11932.095798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.160 3.840 3 H 0.011 0.989 4 C -0.119 4.119 5 C 0.163 3.837 6 H 0.059 0.941 7 N -0.703 5.703 8 C 0.562 3.438 9 O -0.572 6.572 10 C -0.202 4.202 11 C 0.132 3.868 12 N -0.519 5.519 13 C 0.192 3.808 14 C -0.138 4.138 15 C -0.072 4.072 16 C -0.125 4.125 17 C -0.090 4.090 18 C -0.152 4.152 19 C -0.010 4.010 20 C -0.130 4.130 21 C 0.185 3.815 22 N -0.602 5.602 23 C -0.250 4.250 24 H 0.080 0.920 25 C -0.057 4.057 26 N -0.941 5.941 27 Si 0.964 3.036 28 H -0.273 1.273 29 H -0.300 1.300 30 H -0.278 1.278 31 H 0.056 0.944 32 H 0.077 0.923 33 H 0.039 0.961 34 H 0.078 0.922 35 H 0.090 0.910 36 H 0.412 0.588 37 H 0.177 0.823 38 H 0.211 0.789 39 H 0.179 0.821 40 H 0.163 0.837 41 H 0.142 0.858 42 H 0.134 0.866 43 H 0.043 0.957 44 H 0.062 0.938 45 H -0.012 1.012 46 H 0.054 0.946 47 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.003 -5.461 25.897 28.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.053 3.947 3 H 0.029 0.971 4 C -0.158 4.158 5 C 0.059 3.941 6 H 0.077 0.923 7 N -0.353 5.353 8 C 0.350 3.650 9 O -0.453 6.453 10 C -0.208 4.208 11 C -0.012 4.012 12 N -0.226 5.226 13 C 0.021 3.979 14 C -0.141 4.141 15 C -0.092 4.092 16 C -0.142 4.142 17 C -0.109 4.109 18 C -0.170 4.170 19 C -0.015 4.015 20 C -0.170 4.170 21 C 0.058 3.942 22 N -0.326 5.326 23 C -0.380 4.380 24 H 0.098 0.902 25 C -0.251 4.251 26 N -0.588 5.588 27 Si 0.793 3.207 28 H -0.198 1.198 29 H -0.227 1.227 30 H -0.204 1.204 31 H 0.075 0.925 32 H 0.096 0.904 33 H 0.058 0.942 34 H 0.096 0.904 35 H 0.108 0.892 36 H 0.250 0.750 37 H 0.194 0.806 38 H 0.227 0.773 39 H 0.197 0.803 40 H 0.180 0.820 41 H 0.160 0.840 42 H 0.151 0.849 43 H 0.061 0.939 44 H 0.080 0.920 45 H 0.006 0.994 46 H 0.072 0.928 47 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 9.825 -5.432 25.614 27.966 hybrid contribution 0.102 0.344 -2.059 2.090 sum 9.927 -5.087 23.555 26.063 Atomic orbital electron populations 1.21708 0.93758 1.01776 1.01151 1.20638 0.94788 0.92855 0.86389 0.97127 1.22206 0.92148 1.02453 0.99001 1.20712 0.95176 0.95228 0.82988 0.92305 1.45948 1.12852 1.48360 1.28183 1.18238 0.81968 0.80794 0.83994 1.90645 1.56708 1.39465 1.58478 1.21821 0.96064 1.04406 0.98465 1.23046 0.99629 0.89313 0.89185 1.67246 1.17879 1.24063 1.13438 1.24045 0.86526 0.90070 0.97235 1.19326 0.97997 1.00634 0.96098 1.21482 0.90283 0.97089 1.00317 1.21397 1.01766 0.96313 0.94758 1.21506 0.95278 0.97958 0.96139 1.21684 0.94599 0.99184 1.01532 1.19195 0.92090 0.95661 0.94546 1.22315 0.98948 0.99637 0.96144 1.20416 0.83759 0.95376 0.94601 1.44411 1.02552 1.65584 1.20075 1.19510 0.95713 1.36256 0.86493 0.90204 1.25897 0.99174 1.01000 0.99075 1.70194 1.26151 1.45819 1.16611 0.85385 0.78362 0.79073 0.77908 1.19840 1.22698 1.20367 0.92507 0.90432 0.94151 0.90380 0.89154 0.75022 0.80575 0.77290 0.80339 0.81973 0.83977 0.84860 0.93866 0.91959 0.99440 0.92795 0.94430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.36 7.95 71.98 0.57 -3.79 16 2 C 0.16 6.36 3.50 44.98 0.16 6.51 16 3 H 0.01 0.47 8.14 -2.38 -0.02 0.45 16 4 C -0.12 -3.68 4.84 30.67 0.15 -3.53 16 5 C 0.16 5.66 2.42 45.02 0.11 5.76 16 6 H 0.06 2.37 7.58 -2.39 -0.02 2.35 16 7 N -0.70 -19.54 5.03 -445.65 -2.24 -21.79 16 8 C 0.56 17.79 7.74 86.67 0.67 18.46 16 9 O -0.57 -22.57 13.40 -4.04 -0.05 -22.62 16 10 C -0.20 -5.33 6.07 -18.60 -0.11 -5.44 16 11 C 0.13 2.76 10.71 84.81 0.91 3.67 16 12 N -0.52 -9.99 10.22 -193.73 -1.98 -11.97 16 13 C 0.19 2.77 11.00 85.31 0.94 3.71 16 14 C -0.14 -2.44 5.74 -21.33 -0.12 -2.56 16 15 C -0.07 -0.80 9.82 22.33 0.22 -0.58 16 16 C -0.12 -1.53 9.94 22.06 0.22 -1.31 16 17 C -0.09 -1.67 9.96 22.10 0.22 -1.45 16 18 C -0.15 -4.05 9.32 22.20 0.21 -3.84 16 19 C -0.01 -0.25 5.91 -19.94 -0.12 -0.37 16 20 C -0.13 -5.33 5.65 30.67 0.17 -5.16 16 21 C 0.19 9.43 5.28 86.36 0.46 9.88 16 22 N -0.60 -29.95 2.99 -675.23 -2.02 -31.96 16 23 C -0.25 -13.37 8.57 84.03 0.72 -12.65 16 24 H 0.08 4.04 6.24 -2.91 -0.02 4.02 16 25 C -0.06 -3.19 4.94 84.86 0.42 -2.77 16 26 N -0.94 -57.24 11.23 21.65 0.24 -57.00 16 27 Si 0.96 45.16 29.58 68.60 2.03 47.19 16 28 H -0.27 -12.21 7.11 99.48 0.71 -11.51 16 29 H -0.30 -14.40 7.11 99.48 0.71 -13.69 16 30 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 31 H 0.06 1.92 7.44 -2.39 -0.02 1.90 16 32 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 33 H 0.04 1.56 7.63 -2.39 -0.02 1.54 16 34 H 0.08 2.27 8.14 -2.39 -0.02 2.26 16 35 H 0.09 2.25 8.14 -2.39 -0.02 2.23 16 36 H 0.41 8.40 6.71 -92.71 -0.62 7.78 16 37 H 0.18 2.72 6.44 -2.91 -0.02 2.70 16 38 H 0.21 0.99 8.06 -2.91 -0.02 0.96 16 39 H 0.18 0.37 8.06 -2.91 -0.02 0.35 16 40 H 0.16 0.85 8.06 -2.91 -0.02 0.82 16 41 H 0.14 2.09 8.06 -2.91 -0.02 2.07 16 42 H 0.13 4.39 5.24 -2.91 -0.02 4.37 16 43 H 0.04 1.83 8.14 -2.38 -0.02 1.81 16 44 H 0.06 2.46 8.14 -2.39 -0.02 2.44 16 45 H -0.01 -0.70 8.14 -2.38 -0.02 -0.72 16 46 H 0.05 3.09 6.15 -2.39 -0.01 3.08 16 47 H 0.25 14.68 8.31 -92.71 -0.77 13.91 16 Total: -1.00 -76.42 374.06 2.14 -74.28 By element: Atomic # 1 Polarization: 18.95 SS G_CDS: 0.38 Total: 19.33 kcal Atomic # 6 Polarization: -1.24 SS G_CDS: 5.79 Total: 4.54 kcal Atomic # 7 Polarization: -116.72 SS G_CDS: -6.00 Total: -122.71 kcal Atomic # 8 Polarization: -22.57 SS G_CDS: -0.05 Total: -22.62 kcal Atomic # 14 Polarization: 45.16 SS G_CDS: 2.03 Total: 47.19 kcal Total: -76.42 2.14 -74.28 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000948060316.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.189 kcal (2) G-P(sol) polarization free energy of solvation -76.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.279 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds