Wall clock time and date at job start Tue Mar 31 2020 23:23:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.47446 * 2 1 4 4 C 1.50701 * 109.46861 * 119.99739 * 2 1 3 5 5 O 1.21286 * 119.99844 * 120.00141 * 4 2 1 6 6 N 1.34775 * 120.00530 * 300.00161 * 4 2 1 7 7 C 1.46492 * 120.00363 * 179.97438 * 6 4 2 8 8 H 1.09004 * 110.73103 * 36.95502 * 7 6 4 9 9 C 1.54353 * 110.82565 * 273.54678 * 7 6 4 10 10 C 1.51365 * 105.17059 * 215.22596 * 9 7 6 11 11 C 1.38496 * 130.39098 * 197.16821 * 10 9 7 12 12 C 1.38098 * 120.21641 * 180.02562 * 11 10 9 13 13 C 1.38253 * 119.93443 * 359.97438 * 12 11 10 14 14 C 1.38103 * 119.93508 * 0.02562 * 13 12 11 15 15 C 1.38217 * 109.75865 * 17.19576 * 10 9 7 16 16 C 1.51370 * 109.75996 * 359.97438 * 15 10 9 17 17 H 1.08996 * 110.30484 * 101.74049 * 16 15 10 18 18 N 1.46503 * 110.30212 * 223.89179 * 16 15 10 19 19 C 1.36934 * 120.00174 * 273.54570 * 18 16 15 20 20 H 1.08004 * 119.99785 * 0.02562 * 19 18 16 21 21 C 1.38810 * 120.00285 * 179.97438 * 19 18 16 22 22 N 1.31619 * 120.00116 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 120.00237 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.46864 * 60.00006 * 23 21 19 25 25 H 1.48497 * 109.47158 * 180.02562 * 23 21 19 26 26 H 1.48501 * 109.47034 * 300.00581 * 23 21 19 27 27 N 1.46493 * 109.47405 * 239.99857 * 2 1 3 28 28 C 1.36348 * 125.63389 * 299.69786 * 27 2 1 29 29 C 1.34861 * 108.21518 * 179.82931 * 28 27 2 30 30 C 1.40885 * 107.41404 * 0.42262 * 29 28 27 31 31 C 1.34848 * 107.42516 * 359.73843 * 30 29 28 32 32 H 1.09001 * 109.47446 * 179.97438 * 1 2 3 33 33 H 1.08997 * 109.47568 * 300.00166 * 1 2 3 34 34 H 1.09000 * 109.46830 * 60.00161 * 1 2 3 35 35 H 0.96999 * 119.99681 * 0.02562 * 6 4 2 36 36 H 1.09004 * 110.29979 * 96.30397 * 9 7 6 37 37 H 1.08993 * 110.38420 * 334.19540 * 9 7 6 38 38 H 1.08001 * 119.89280 * 0.02997 * 11 10 9 39 39 H 1.07999 * 120.03330 * 180.02562 * 12 11 10 40 40 H 1.08007 * 120.03151 * 180.02562 * 13 12 11 41 41 H 1.08000 * 119.88826 * 180.25598 * 14 13 12 42 42 H 0.97002 * 119.99604 * 93.54413 * 18 16 15 43 43 H 0.96997 * 120.00548 * 179.97438 * 22 21 19 44 44 H 1.07993 * 125.89045 * 359.95786 * 28 27 2 45 45 H 1.07992 * 126.28810 * 180.16127 * 29 28 27 46 46 H 1.08010 * 126.28743 * 179.73307 * 30 29 28 47 47 H 1.08001 * 125.89410 * 179.97438 * 31 30 29 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 2.7296 -1.6965 1.1193 6 7 1.7067 -0.2500 2.4546 7 6 2.1945 -0.9408 3.6508 8 1 3.2074 -1.3124 3.4956 9 6 1.2432 -2.0900 4.0470 10 6 1.2651 -2.1184 5.5602 11 6 0.8692 -3.1075 6.4451 12 6 0.9829 -2.9079 7.8068 13 6 1.4941 -1.7174 8.2893 14 6 1.8894 -0.7299 7.4085 15 6 1.7756 -0.9279 6.0426 16 6 2.1322 -0.0183 4.8865 17 1 1.3628 0.7419 4.7520 18 7 3.4349 0.6109 5.1178 19 6 3.5157 1.7736 5.8366 20 1 2.6191 2.2266 6.2333 21 6 4.7500 2.3695 6.0563 22 7 5.8427 1.8172 5.5733 23 14 4.8601 3.9560 7.0362 24 1 4.3214 3.7326 8.4019 25 1 6.2791 4.3842 7.1272 26 1 4.0671 5.0127 6.3581 27 7 2.0184 -0.6906 -1.1961 28 6 1.7656 -1.9902 -1.5218 29 6 2.3800 -2.2587 -2.6919 30 6 3.0441 -1.0846 -3.0986 31 6 2.8056 -0.1417 -2.1646 32 1 -0.3634 -1.0276 -0.0005 33 1 -0.3634 0.5138 0.8899 34 1 -0.3633 0.5138 -0.8900 35 1 1.1487 0.5385 2.5436 36 1 1.6058 -3.0364 3.6457 37 1 0.2343 -1.8889 3.6870 38 1 0.4702 -4.0380 6.0690 39 1 0.6736 -3.6814 8.4942 40 1 1.5841 -1.5598 9.3540 41 1 2.2925 0.1982 7.7862 42 1 4.2402 0.2038 4.7619 43 1 6.7052 2.2337 5.7265 44 1 1.1736 -2.6842 -0.9437 45 1 2.3688 -3.2017 -3.2181 46 1 3.6358 -0.9623 -3.9939 47 1 3.1748 0.8731 -2.1807 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000960260540.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:23:31 Heat of formation + Delta-G solvation = 63.843292 kcal Electronic energy + Delta-G solvation = -29098.615716 eV Core-core repulsion = 25247.616397 eV Total energy + Delta-G solvation = -3850.999319 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.37415 -40.14137 -38.98551 -36.21323 -34.44842 -34.02946 -32.73084 -31.25189 -29.75921 -29.48261 -28.66182 -27.78175 -26.11488 -24.78524 -23.18304 -22.29445 -21.02966 -20.48042 -20.40574 -20.26661 -19.48485 -17.84574 -17.26811 -17.01976 -16.07518 -15.62860 -15.45811 -15.05897 -14.70708 -14.35465 -14.33872 -13.89926 -13.68056 -13.54195 -13.33655 -13.18570 -12.94106 -12.72746 -12.59174 -12.53666 -12.39525 -12.25658 -12.15542 -12.02611 -11.83114 -11.69787 -11.12333 -10.99918 -10.87127 -10.66447 -10.45250 -10.22828 -9.93107 -9.82656 -9.14720 -8.95518 -8.55399 -8.35947 -8.13718 -8.02628 -7.15475 -5.89296 -3.20578 1.75420 1.85176 2.25674 2.53495 2.76586 3.17636 3.25425 3.34417 3.39464 3.41323 4.17389 4.35286 4.47394 4.54369 4.61331 4.75160 4.96593 5.02587 5.22329 5.25376 5.28924 5.32349 5.35776 5.37381 5.46161 5.49645 5.60254 5.65571 5.69660 5.71712 5.81565 5.88712 6.03133 6.09663 6.18953 6.27310 6.36601 6.39023 6.42033 6.57727 6.65391 6.84835 6.97080 7.08440 7.18858 7.30669 7.34450 7.44866 7.53117 7.55949 8.17260 8.26358 9.38363 9.90770 10.26280 11.32098 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.009433 B = 0.003556 C = 0.002760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2967.645092 B = 7872.984439 C =10141.402740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.114 3.886 3 H 0.124 0.876 4 C 0.503 3.497 5 O -0.518 6.518 6 N -0.705 5.705 7 C 0.143 3.857 8 H 0.102 0.898 9 C -0.085 4.085 10 C -0.106 4.106 11 C -0.115 4.115 12 C -0.131 4.131 13 C -0.129 4.129 14 C -0.079 4.079 15 C -0.092 4.092 16 C 0.209 3.791 17 H 0.067 0.933 18 N -0.711 5.711 19 C -0.249 4.249 20 H 0.071 0.929 21 C -0.005 4.005 22 N -0.925 5.925 23 Si 0.906 3.094 24 H -0.285 1.285 25 H -0.290 1.290 26 H -0.285 1.285 27 N -0.431 5.431 28 C 0.017 3.983 29 C -0.212 4.212 30 C -0.199 4.199 31 C -0.018 4.018 32 H 0.070 0.930 33 H 0.082 0.918 34 H 0.076 0.924 35 H 0.402 0.598 36 H 0.074 0.926 37 H 0.078 0.922 38 H 0.111 0.889 39 H 0.115 0.885 40 H 0.116 0.884 41 H 0.128 0.872 42 H 0.387 0.613 43 H 0.258 0.742 44 H 0.153 0.847 45 H 0.131 0.869 46 H 0.132 0.868 47 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.924 -5.489 -8.696 17.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.007 3.993 3 H 0.142 0.858 4 C 0.287 3.713 5 O -0.393 6.393 6 N -0.356 5.356 7 C 0.037 3.963 8 H 0.120 0.880 9 C -0.124 4.124 10 C -0.107 4.107 11 C -0.134 4.134 12 C -0.149 4.149 13 C -0.147 4.147 14 C -0.098 4.098 15 C -0.096 4.096 16 C 0.097 3.903 17 H 0.084 0.916 18 N -0.351 5.351 19 C -0.380 4.380 20 H 0.089 0.911 21 C -0.202 4.202 22 N -0.572 5.572 23 Si 0.737 3.263 24 H -0.211 1.211 25 H -0.216 1.216 26 H -0.212 1.212 27 N -0.108 5.108 28 C -0.112 4.112 29 C -0.236 4.236 30 C -0.224 4.224 31 C -0.147 4.147 32 H 0.089 0.911 33 H 0.101 0.899 34 H 0.095 0.905 35 H 0.237 0.763 36 H 0.093 0.907 37 H 0.096 0.904 38 H 0.129 0.871 39 H 0.133 0.867 40 H 0.134 0.866 41 H 0.146 0.854 42 H 0.222 0.778 43 H 0.068 0.932 44 H 0.171 0.829 45 H 0.149 0.851 46 H 0.150 0.850 47 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -13.489 -5.828 -8.407 16.930 hybrid contribution 0.331 1.069 0.749 1.347 sum -13.158 -4.759 -7.658 15.951 Atomic orbital electron populations 1.22123 0.91288 1.04048 1.04066 1.21284 0.96694 0.97764 0.83545 0.85794 1.20514 0.80915 0.85282 0.84633 1.90782 1.36544 1.25737 1.86229 1.45814 1.53167 1.31724 1.04900 1.21910 0.98479 0.91982 0.83897 0.88004 1.21320 0.99832 0.99517 0.91691 1.20423 1.00282 0.95162 0.94876 1.20458 1.01823 0.98223 0.92846 1.20881 1.01581 0.97551 0.94901 1.21056 1.00292 0.94067 0.99290 1.20799 0.97242 0.99566 0.92152 1.21640 0.96031 0.96354 0.95559 1.19900 0.90879 0.91538 0.87949 0.91556 1.42418 1.01843 1.26713 1.64115 1.19121 0.92891 0.99156 1.26806 0.91074 1.24761 0.95432 0.99118 1.00883 1.69653 0.97663 1.40621 1.49263 0.86303 0.76736 0.83332 0.79978 1.21118 1.21628 1.21182 1.43709 1.39914 1.10393 1.16740 1.21613 1.05844 0.85532 0.98237 1.20810 1.05332 0.99197 0.98256 1.20821 1.06436 0.93915 1.01224 1.21789 1.01335 0.99972 0.91555 0.91125 0.89947 0.90511 0.76342 0.90731 0.90387 0.87118 0.86735 0.86586 0.85391 0.77794 0.93212 0.82904 0.85062 0.84976 0.82391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.17 9.14 37.16 0.34 -0.83 16 2 C 0.11 1.21 3.36 -69.09 -0.23 0.98 16 3 H 0.12 1.11 8.06 -51.93 -0.42 0.69 16 4 C 0.50 7.02 7.11 -10.99 -0.08 6.94 16 5 O -0.52 -9.45 15.17 5.55 0.08 -9.37 16 6 N -0.71 -9.23 5.07 -52.44 -0.27 -9.49 16 7 C 0.14 2.29 3.02 -66.53 -0.20 2.09 16 8 H 0.10 1.97 7.37 -51.93 -0.38 1.59 16 9 C -0.08 -1.21 6.49 -26.85 -0.17 -1.39 16 10 C -0.11 -1.69 6.14 -104.21 -0.64 -2.33 16 11 C -0.12 -1.67 10.04 -39.54 -0.40 -2.07 16 12 C -0.13 -1.85 10.05 -39.63 -0.40 -2.25 16 13 C -0.13 -2.00 10.05 -39.63 -0.40 -2.40 16 14 C -0.08 -1.44 9.89 -39.54 -0.39 -1.83 16 15 C -0.09 -1.66 5.79 -104.21 -0.60 -2.26 16 16 C 0.21 3.81 3.21 -68.05 -0.22 3.59 16 17 H 0.07 1.16 7.76 -51.93 -0.40 0.75 16 18 N -0.71 -16.49 5.16 -53.55 -0.28 -16.77 16 19 C -0.25 -6.34 9.37 -15.06 -0.14 -6.48 16 20 H 0.07 1.74 7.83 -52.48 -0.41 1.33 16 21 C 0.00 -0.13 5.50 -17.43 -0.10 -0.22 16 22 N -0.93 -26.92 13.06 55.49 0.72 -26.19 16 23 Si 0.91 21.28 29.55 -169.99 -5.02 16.25 16 24 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 25 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 26 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 27 N -0.43 -5.43 2.40 -111.26 -0.27 -5.70 16 28 C 0.02 0.23 9.56 -16.74 -0.16 0.07 16 29 C -0.21 -2.75 10.86 -39.78 -0.43 -3.19 16 30 C -0.20 -2.52 10.86 -39.78 -0.43 -2.95 16 31 C -0.02 -0.22 11.39 -16.75 -0.19 -0.41 16 32 H 0.07 0.56 7.92 -51.93 -0.41 0.15 16 33 H 0.08 0.47 7.56 -51.93 -0.39 0.07 16 34 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.40 4.22 7.80 -40.82 -0.32 3.90 16 36 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 37 H 0.08 0.96 8.08 -51.93 -0.42 0.54 16 38 H 0.11 1.34 8.06 -52.49 -0.42 0.92 16 39 H 0.11 1.30 8.06 -52.49 -0.42 0.88 16 40 H 0.12 1.54 8.06 -52.48 -0.42 1.12 16 41 H 0.13 2.53 7.57 -52.49 -0.40 2.13 16 42 H 0.39 10.00 7.58 -40.82 -0.31 9.69 16 43 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 44 H 0.15 1.85 8.06 -52.49 -0.42 1.43 16 45 H 0.13 1.47 8.06 -52.49 -0.42 1.05 16 46 H 0.13 1.41 8.06 -52.48 -0.42 0.99 16 47 H 0.16 1.57 8.06 -52.49 -0.42 1.14 16 LS Contribution 392.07 15.07 5.91 5.91 Total: -1.00 -32.35 392.07 -10.76 -43.11 By element: Atomic # 1 Polarization: 24.01 SS G_CDS: -6.80 Total: 17.20 kcal Atomic # 6 Polarization: -10.11 SS G_CDS: -4.84 Total: -14.95 kcal Atomic # 7 Polarization: -58.07 SS G_CDS: -0.08 Total: -58.16 kcal Atomic # 8 Polarization: -9.45 SS G_CDS: 0.08 Total: -9.37 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -32.35 -10.76 -43.11 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000960260540.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.953 kcal (2) G-P(sol) polarization free energy of solvation -32.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.109 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds