Wall clock time and date at job start Tue Mar 31 2020 23:23:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.47446 * 2 1 4 4 C 1.50701 * 109.46861 * 119.99739 * 2 1 3 5 5 O 1.21286 * 119.99844 * 120.00141 * 4 2 1 6 6 N 1.34775 * 120.00530 * 300.00161 * 4 2 1 7 7 C 1.46492 * 120.00363 * 179.97438 * 6 4 2 8 8 H 1.09004 * 110.73103 * 36.95502 * 7 6 4 9 9 C 1.54353 * 110.82565 * 273.54678 * 7 6 4 10 10 C 1.51365 * 105.17059 * 215.22596 * 9 7 6 11 11 C 1.38496 * 130.39098 * 197.16821 * 10 9 7 12 12 C 1.38098 * 120.21641 * 180.02562 * 11 10 9 13 13 C 1.38253 * 119.93443 * 359.97438 * 12 11 10 14 14 C 1.38103 * 119.93508 * 0.02562 * 13 12 11 15 15 C 1.38217 * 109.75865 * 17.19576 * 10 9 7 16 16 C 1.51370 * 109.75996 * 359.97438 * 15 10 9 17 17 H 1.08996 * 110.30484 * 101.74049 * 16 15 10 18 18 N 1.46503 * 110.30212 * 223.89179 * 16 15 10 19 19 C 1.36934 * 120.00174 * 273.54570 * 18 16 15 20 20 H 1.08004 * 119.99785 * 0.02562 * 19 18 16 21 21 C 1.38810 * 120.00285 * 179.97438 * 19 18 16 22 22 N 1.31619 * 120.00116 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 120.00237 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.46864 * 60.00006 * 23 21 19 25 25 H 1.48497 * 109.47158 * 180.02562 * 23 21 19 26 26 H 1.48501 * 109.47034 * 300.00581 * 23 21 19 27 27 N 1.46493 * 109.47405 * 239.99857 * 2 1 3 28 28 C 1.36348 * 125.63389 * 299.69786 * 27 2 1 29 29 C 1.34861 * 108.21518 * 179.82931 * 28 27 2 30 30 C 1.40885 * 107.41404 * 0.42262 * 29 28 27 31 31 C 1.34848 * 107.42516 * 359.73843 * 30 29 28 32 32 H 1.09001 * 109.47446 * 179.97438 * 1 2 3 33 33 H 1.08997 * 109.47568 * 300.00166 * 1 2 3 34 34 H 1.09000 * 109.46830 * 60.00161 * 1 2 3 35 35 H 0.96999 * 119.99681 * 0.02562 * 6 4 2 36 36 H 1.09004 * 110.29979 * 96.30397 * 9 7 6 37 37 H 1.08993 * 110.38420 * 334.19540 * 9 7 6 38 38 H 1.08001 * 119.89280 * 0.02997 * 11 10 9 39 39 H 1.07999 * 120.03330 * 180.02562 * 12 11 10 40 40 H 1.08007 * 120.03151 * 180.02562 * 13 12 11 41 41 H 1.08000 * 119.88826 * 180.25598 * 14 13 12 42 42 H 0.97002 * 119.99604 * 93.54413 * 18 16 15 43 43 H 0.96997 * 120.00548 * 179.97438 * 22 21 19 44 44 H 1.07993 * 125.89045 * 359.95786 * 28 27 2 45 45 H 1.07992 * 126.28810 * 180.16127 * 29 28 27 46 46 H 1.08010 * 126.28743 * 179.73307 * 30 29 28 47 47 H 1.08001 * 125.89410 * 179.97438 * 31 30 29 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 2.7296 -1.6965 1.1193 6 7 1.7067 -0.2500 2.4546 7 6 2.1945 -0.9408 3.6508 8 1 3.2074 -1.3124 3.4956 9 6 1.2432 -2.0900 4.0470 10 6 1.2651 -2.1184 5.5602 11 6 0.8692 -3.1075 6.4451 12 6 0.9829 -2.9079 7.8068 13 6 1.4941 -1.7174 8.2893 14 6 1.8894 -0.7299 7.4085 15 6 1.7756 -0.9279 6.0426 16 6 2.1322 -0.0183 4.8865 17 1 1.3628 0.7419 4.7520 18 7 3.4349 0.6109 5.1178 19 6 3.5157 1.7736 5.8366 20 1 2.6191 2.2266 6.2333 21 6 4.7500 2.3695 6.0563 22 7 5.8427 1.8172 5.5733 23 14 4.8601 3.9560 7.0362 24 1 4.3214 3.7326 8.4019 25 1 6.2791 4.3842 7.1272 26 1 4.0671 5.0127 6.3581 27 7 2.0184 -0.6906 -1.1961 28 6 1.7656 -1.9902 -1.5218 29 6 2.3800 -2.2587 -2.6919 30 6 3.0441 -1.0846 -3.0986 31 6 2.8056 -0.1417 -2.1646 32 1 -0.3634 -1.0276 -0.0005 33 1 -0.3634 0.5138 0.8899 34 1 -0.3633 0.5138 -0.8900 35 1 1.1487 0.5385 2.5436 36 1 1.6058 -3.0364 3.6457 37 1 0.2343 -1.8889 3.6870 38 1 0.4702 -4.0380 6.0690 39 1 0.6736 -3.6814 8.4942 40 1 1.5841 -1.5598 9.3540 41 1 2.2925 0.1982 7.7862 42 1 4.2402 0.2038 4.7619 43 1 6.7052 2.2337 5.7265 44 1 1.1736 -2.6842 -0.9437 45 1 2.3688 -3.2017 -3.2181 46 1 3.6358 -0.9623 -3.9939 47 1 3.1748 0.8731 -2.1807 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000960260540.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:23:30 Heat of formation + Delta-G solvation = 45.284015 kcal Electronic energy + Delta-G solvation = -29099.420506 eV Core-core repulsion = 25247.616397 eV Total energy + Delta-G solvation = -3851.804109 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.34311 -41.37646 -40.15722 -37.54122 -35.78640 -35.33892 -33.96896 -32.89260 -31.25304 -30.37756 -29.61064 -28.93788 -27.67586 -25.74179 -24.93634 -23.46715 -22.18825 -21.75794 -21.55844 -21.31485 -20.52912 -19.30769 -18.68514 -18.08029 -17.38876 -16.97483 -16.63564 -16.30342 -16.07569 -15.74158 -15.49917 -15.13042 -14.96500 -14.81656 -14.48087 -14.40880 -14.21980 -13.88545 -13.80780 -13.59428 -13.35226 -13.30831 -13.21433 -13.03941 -12.94364 -12.80673 -12.71560 -12.57331 -12.28435 -12.23849 -12.01968 -11.82189 -11.59427 -11.12033 -10.96202 -10.22217 -9.61888 -9.51342 -9.39887 -9.08302 -8.98959 -7.94990 -5.25214 0.51851 0.59318 1.26714 1.44735 1.46868 1.48608 1.54817 1.84180 2.20437 2.23771 2.54188 2.93106 3.32043 3.39749 3.53288 3.68039 3.81939 3.82005 4.05081 4.10597 4.11833 4.15396 4.28199 4.34267 4.37287 4.40286 4.59182 4.65180 4.65648 4.76074 4.77997 4.81803 4.83993 4.93028 4.94619 5.10450 5.19417 5.29975 5.40437 5.42913 5.44973 5.48930 5.63882 5.71756 5.87931 6.13465 6.19871 6.25153 6.33277 6.36568 6.55237 7.09820 7.30428 8.00065 8.25306 9.27810 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.009433 B = 0.003556 C = 0.002760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2967.645092 B = 7872.984439 C =10141.402740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.117 3.883 3 H 0.144 0.856 4 C 0.502 3.498 5 O -0.566 6.566 6 N -0.694 5.694 7 C 0.153 3.847 8 H 0.063 0.937 9 C -0.072 4.072 10 C -0.109 4.109 11 C -0.115 4.115 12 C -0.122 4.122 13 C -0.132 4.132 14 C -0.107 4.107 15 C -0.119 4.119 16 C 0.208 3.792 17 H 0.077 0.923 18 N -0.723 5.723 19 C -0.232 4.232 20 H 0.080 0.920 21 C -0.070 4.070 22 N -0.969 5.969 23 Si 0.967 3.033 24 H -0.279 1.279 25 H -0.302 1.302 26 H -0.274 1.274 27 N -0.436 5.436 28 C 0.002 3.998 29 C -0.228 4.228 30 C -0.216 4.216 31 C -0.028 4.028 32 H 0.065 0.935 33 H 0.105 0.895 34 H 0.089 0.911 35 H 0.417 0.583 36 H 0.074 0.926 37 H 0.105 0.895 38 H 0.142 0.858 39 H 0.151 0.849 40 H 0.136 0.864 41 H 0.100 0.900 42 H 0.370 0.630 43 H 0.249 0.751 44 H 0.158 0.842 45 H 0.142 0.858 46 H 0.147 0.853 47 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.775 -5.773 -8.482 19.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.011 3.989 3 H 0.161 0.839 4 C 0.288 3.712 5 O -0.444 6.444 6 N -0.346 5.346 7 C 0.046 3.954 8 H 0.081 0.919 9 C -0.111 4.111 10 C -0.110 4.110 11 C -0.133 4.133 12 C -0.140 4.140 13 C -0.150 4.150 14 C -0.125 4.125 15 C -0.122 4.122 16 C 0.099 3.901 17 H 0.095 0.905 18 N -0.361 5.361 19 C -0.363 4.363 20 H 0.098 0.902 21 C -0.262 4.262 22 N -0.620 5.620 23 Si 0.796 3.204 24 H -0.205 1.205 25 H -0.229 1.229 26 H -0.200 1.200 27 N -0.113 5.113 28 C -0.128 4.128 29 C -0.252 4.252 30 C -0.241 4.241 31 C -0.157 4.157 32 H 0.085 0.915 33 H 0.123 0.877 34 H 0.108 0.892 35 H 0.254 0.746 36 H 0.092 0.908 37 H 0.123 0.877 38 H 0.160 0.840 39 H 0.169 0.831 40 H 0.154 0.846 41 H 0.118 0.882 42 H 0.202 0.798 43 H 0.058 0.942 44 H 0.175 0.825 45 H 0.160 0.840 46 H 0.164 0.836 47 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -16.438 -6.093 -8.182 19.346 hybrid contribution 1.136 1.045 0.712 1.700 sum -15.302 -5.048 -7.470 17.760 Atomic orbital electron populations 1.22139 0.88454 1.04352 1.05809 1.21485 0.98751 0.97645 0.81045 0.83855 1.21152 0.79870 0.84695 0.85504 1.90764 1.38688 1.28011 1.86902 1.45676 1.52904 1.31977 1.04013 1.21544 0.97399 0.92349 0.84061 0.91872 1.21239 1.00562 0.98466 0.90804 1.20625 0.99995 0.94640 0.95733 1.20869 1.00708 0.98794 0.92882 1.21311 0.99735 0.97478 0.95493 1.21308 0.99738 0.93997 0.99994 1.20770 0.99122 0.99704 0.92924 1.21516 0.98106 0.97322 0.95285 1.20088 0.88679 0.92080 0.89278 0.90499 1.42558 1.03127 1.26523 1.63915 1.19478 0.92858 0.99145 1.24831 0.90201 1.25492 0.95351 1.02412 1.02945 1.69826 0.97837 1.42369 1.51941 0.85312 0.75955 0.80181 0.78919 1.20511 1.22853 1.20001 1.43906 1.39871 1.10358 1.17145 1.21804 1.06326 0.86157 0.98517 1.21121 1.05529 0.99974 0.98603 1.21142 1.06845 0.93981 1.02118 1.22257 1.00972 1.01003 0.91426 0.91548 0.87685 0.89237 0.74550 0.90762 0.87670 0.84031 0.83109 0.84634 0.88151 0.79828 0.94209 0.82505 0.84017 0.83572 0.80233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.81 9.14 71.98 0.66 -1.16 16 2 C 0.12 2.27 3.36 44.25 0.15 2.42 16 3 H 0.14 2.23 8.06 -2.39 -0.02 2.21 16 4 C 0.50 13.67 7.11 87.66 0.62 14.30 16 5 O -0.57 -20.92 15.17 -3.05 -0.05 -20.96 16 6 N -0.69 -17.47 5.07 -438.23 -2.22 -19.69 16 7 C 0.15 4.90 3.02 45.90 0.14 5.04 16 8 H 0.06 2.56 7.37 -2.39 -0.02 2.54 16 9 C -0.07 -1.95 6.49 30.52 0.20 -1.75 16 10 C -0.11 -3.27 6.14 -19.60 -0.12 -3.39 16 11 C -0.11 -2.94 10.04 22.30 0.22 -2.72 16 12 C -0.12 -3.03 10.05 22.24 0.22 -2.81 16 13 C -0.13 -3.88 10.05 22.24 0.22 -3.66 16 14 C -0.11 -3.89 9.89 22.30 0.22 -3.67 16 15 C -0.12 -4.25 5.79 -19.60 -0.11 -4.37 16 16 C 0.21 7.62 3.21 44.91 0.14 7.77 16 17 H 0.08 2.62 7.76 -2.39 -0.02 2.60 16 18 N -0.72 -34.56 5.16 -323.32 -1.67 -36.23 16 19 C -0.23 -12.00 9.37 84.03 0.79 -11.21 16 20 H 0.08 3.92 7.83 -2.91 -0.02 3.90 16 21 C -0.07 -3.84 5.50 84.86 0.47 -3.38 16 22 N -0.97 -58.61 13.06 21.65 0.28 -58.33 16 23 Si 0.97 44.57 29.55 68.60 2.03 46.59 16 24 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 25 H -0.30 -14.36 7.11 99.48 0.71 -13.66 16 26 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 27 N -0.44 -10.56 2.40 -505.91 -1.22 -11.78 16 28 C 0.00 0.05 9.56 83.22 0.80 0.84 16 29 C -0.23 -5.88 10.86 22.14 0.24 -5.64 16 30 C -0.22 -5.35 10.86 22.14 0.24 -5.11 16 31 C -0.03 -0.66 11.39 83.21 0.95 0.29 16 32 H 0.07 0.89 7.92 -2.39 -0.02 0.87 16 33 H 0.10 0.80 7.56 -2.39 -0.02 0.78 16 34 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 35 H 0.42 7.91 7.80 -92.71 -0.72 7.19 16 36 H 0.07 2.05 8.14 -2.38 -0.02 2.03 16 37 H 0.11 2.27 8.08 -2.39 -0.02 2.25 16 38 H 0.14 2.77 8.06 -2.91 -0.02 2.75 16 39 H 0.15 2.67 8.06 -2.91 -0.02 2.64 16 40 H 0.14 3.33 8.06 -2.91 -0.02 3.31 16 41 H 0.10 4.12 7.57 -2.91 -0.02 4.09 16 42 H 0.37 20.08 7.58 -92.71 -0.70 19.37 16 43 H 0.25 14.81 8.31 -92.71 -0.77 14.04 16 44 H 0.16 3.78 8.06 -2.91 -0.02 3.76 16 45 H 0.14 3.15 8.06 -2.91 -0.02 3.13 16 46 H 0.15 3.02 8.06 -2.91 -0.02 3.00 16 47 H 0.18 3.27 8.06 -2.91 -0.02 3.24 16 Total: -1.00 -73.40 392.07 2.77 -70.63 By element: Atomic # 1 Polarization: 48.41 SS G_CDS: -0.44 Total: 47.97 kcal Atomic # 6 Polarization: -24.25 SS G_CDS: 6.05 Total: -18.20 kcal Atomic # 7 Polarization: -121.21 SS G_CDS: -4.82 Total: -126.03 kcal Atomic # 8 Polarization: -20.92 SS G_CDS: -0.05 Total: -20.96 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 2.03 Total: 46.59 kcal Total: -73.40 2.77 -70.63 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000960260540.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.915 kcal (2) G-P(sol) polarization free energy of solvation -73.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.631 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds