Wall clock time and date at job start Tue Mar 31 2020 23:23:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08995 * 109.47270 * 2 1 4 4 C 1.50697 * 109.47217 * 239.99244 * 2 1 3 5 5 O 1.21275 * 120.00440 * 239.99902 * 4 2 1 6 6 N 1.34777 * 119.99667 * 60.00088 * 4 2 1 7 7 C 1.46503 * 120.00004 * 179.97438 * 6 4 2 8 8 H 1.09002 * 110.88489 * 31.48860 * 7 6 4 9 9 C 1.54347 * 110.82301 * 267.96931 * 7 6 4 10 10 C 1.51364 * 105.17093 * 215.42517 * 9 7 6 11 11 C 1.38495 * 130.39037 * 197.18865 * 10 9 7 12 12 C 1.38107 * 120.21768 * 179.97438 * 11 10 9 13 13 C 1.38262 * 119.93116 * 0.02562 * 12 11 10 14 14 C 1.38101 * 119.93360 * 359.97438 * 13 12 11 15 15 C 1.38217 * 109.76098 * 17.19348 * 10 9 7 16 16 C 1.51377 * 109.75725 * 359.97438 * 15 10 9 17 17 H 1.08997 * 110.30083 * 101.83485 * 16 15 10 18 18 N 1.46498 * 110.30176 * 223.88731 * 16 15 10 19 19 C 1.36935 * 120.00239 * 273.54361 * 18 16 15 20 20 H 1.07998 * 119.99613 * 0.02562 * 19 18 16 21 21 C 1.38806 * 120.00008 * 180.02562 * 19 18 16 22 22 N 1.31624 * 120.00103 * 180.02562 * 21 19 18 23 23 Si 1.86803 * 120.00201 * 359.72443 * 21 19 18 24 24 H 1.48501 * 109.47085 * 270.27640 * 23 21 19 25 25 H 1.48497 * 109.46789 * 30.27649 * 23 21 19 26 26 H 1.48490 * 109.47245 * 150.27799 * 23 21 19 27 27 N 1.46503 * 109.46974 * 119.99478 * 2 1 3 28 28 C 1.36346 * 125.63694 * 59.69796 * 27 2 1 29 29 C 1.34846 * 108.22020 * 179.82846 * 28 27 2 30 30 C 1.40897 * 107.41459 * 0.41983 * 29 28 27 31 31 C 1.34852 * 107.41850 * 359.73920 * 30 29 28 32 32 H 1.08999 * 109.47079 * 300.00280 * 1 2 3 33 33 H 1.08997 * 109.47277 * 60.00712 * 1 2 3 34 34 H 1.09003 * 109.47502 * 180.02562 * 1 2 3 35 35 H 0.96998 * 120.00287 * 0.02562 * 6 4 2 36 36 H 1.09004 * 110.29659 * 96.50372 * 9 7 6 37 37 H 1.08994 * 110.30120 * 334.35369 * 9 7 6 38 38 H 1.08002 * 119.89369 * 359.97438 * 11 10 9 39 39 H 1.07997 * 120.03435 * 180.02562 * 12 11 10 40 40 H 1.07997 * 120.02838 * 180.02562 * 13 12 11 41 41 H 1.07999 * 119.89253 * 179.97438 * 14 13 12 42 42 H 0.97004 * 119.99747 * 93.55100 * 18 16 15 43 43 H 0.96999 * 120.00174 * 179.72503 * 22 21 19 44 44 H 1.08004 * 125.88788 * 359.95210 * 28 27 2 45 45 H 1.08001 * 126.29548 * 180.16213 * 29 28 27 46 46 H 1.08004 * 126.29132 * 179.73228 * 30 29 28 47 47 H 1.07996 * 125.88871 * 179.97438 * 31 30 29 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7106 -1.2303 5 8 2.7296 -1.6966 -1.1190 6 7 1.7067 -0.2502 -2.4545 7 6 2.1955 -0.9406 -3.6506 8 1 2.3005 -2.0098 -3.4665 9 6 3.5313 -0.3322 -4.1279 10 6 3.4836 -0.4080 -5.6389 11 6 4.4997 -0.3099 -6.5749 12 6 4.2155 -0.4116 -7.9226 13 6 2.9125 -0.6115 -8.3397 14 6 1.8980 -0.7096 -7.4078 15 6 2.1811 -0.6077 -6.0559 16 6 1.2643 -0.6804 -4.8536 17 1 0.7335 0.2629 -4.7251 18 7 0.3111 -1.7823 -5.0070 19 6 -0.8650 -1.5817 -5.6791 20 1 -1.0896 -0.6112 -6.0964 21 6 -1.7683 -2.6256 -5.8240 22 7 -2.8985 -2.4329 -6.4704 23 14 -1.3762 -4.3062 -5.1089 24 1 -0.6491 -5.1165 -6.1188 25 1 -0.5284 -4.1443 -3.9005 26 1 -2.6393 -4.9936 -4.7389 27 7 2.0183 -0.6905 1.1963 28 6 1.7559 -1.9867 1.5281 29 6 2.3799 -2.2585 2.6922 30 6 3.0441 -1.0844 3.0988 31 6 2.8055 -0.1415 2.1647 32 1 -0.3633 0.5139 0.8899 33 1 -0.3634 0.5137 -0.8900 34 1 -0.3634 -1.0277 0.0005 35 1 1.1494 0.5387 -2.5436 36 1 4.3699 -0.9147 -3.7462 37 1 3.6116 0.7053 -3.8036 38 1 5.5177 -0.1534 -6.2499 39 1 5.0101 -0.3351 -8.6499 40 1 2.6885 -0.6917 -9.3931 41 1 0.8804 -0.8653 -7.7344 42 1 0.5131 -2.6540 -4.6324 43 1 -3.5280 -3.1634 -6.5752 44 1 1.1539 -2.6773 0.9560 45 1 2.3688 -3.2016 3.2185 46 1 3.6356 -0.9619 3.9941 47 1 3.1740 0.8735 2.1811 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000960260542.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:23:35 Heat of formation + Delta-G solvation = 67.455218 kcal Electronic energy + Delta-G solvation = -29247.105269 eV Core-core repulsion = 25396.262575 eV Total energy + Delta-G solvation = -3850.842694 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.43351 -40.24354 -39.07605 -36.33562 -34.50397 -34.15163 -32.79714 -31.42242 -30.10096 -29.50935 -28.71376 -27.85263 -26.39777 -24.82456 -22.80813 -22.35383 -21.07474 -20.66468 -20.49865 -20.27967 -19.56215 -18.09205 -17.51656 -17.09001 -16.16823 -15.84351 -15.37194 -15.12227 -14.76518 -14.49919 -14.26319 -13.99347 -13.77476 -13.59784 -13.51914 -13.01487 -12.94510 -12.69421 -12.67652 -12.60170 -12.47203 -12.27122 -12.21580 -12.14836 -12.06152 -11.79640 -11.27876 -11.12595 -10.93819 -10.74167 -10.47837 -10.26656 -10.01378 -9.71325 -9.22514 -9.02326 -8.60601 -8.41588 -8.21626 -8.08044 -7.46468 -5.91178 -3.28501 1.68648 1.79147 2.20786 2.41841 2.69673 3.12816 3.18886 3.30431 3.34804 3.39546 4.11756 4.31042 4.47120 4.48158 4.53511 4.67385 4.84296 4.93752 5.17386 5.23555 5.25785 5.28994 5.30923 5.34672 5.36615 5.41893 5.57377 5.58469 5.59730 5.67332 5.78428 5.79592 5.90191 5.98347 6.09968 6.15368 6.31859 6.34492 6.34726 6.48871 6.56070 6.78310 6.92668 7.03348 7.11712 7.25320 7.27300 7.39353 7.44647 7.81339 8.06913 8.26484 9.02764 9.76024 9.93924 11.26028 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.009617 B = 0.003838 C = 0.002987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2910.728016 B = 7293.432065 C = 9372.829007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.116 3.884 3 H 0.122 0.878 4 C 0.503 3.497 5 O -0.519 6.519 6 N -0.706 5.706 7 C 0.139 3.861 8 H 0.102 0.898 9 C -0.085 4.085 10 C -0.106 4.106 11 C -0.116 4.116 12 C -0.129 4.129 13 C -0.128 4.128 14 C -0.077 4.077 15 C -0.095 4.095 16 C 0.214 3.786 17 H 0.076 0.924 18 N -0.736 5.736 19 C -0.250 4.250 20 H 0.092 0.908 21 C 0.014 3.986 22 N -0.927 5.927 23 Si 0.879 3.121 24 H -0.282 1.282 25 H -0.277 1.277 26 H -0.290 1.290 27 N -0.432 5.432 28 C 0.020 3.980 29 C -0.212 4.212 30 C -0.198 4.198 31 C -0.022 4.022 32 H 0.076 0.924 33 H 0.085 0.915 34 H 0.073 0.927 35 H 0.403 0.597 36 H 0.074 0.926 37 H 0.080 0.920 38 H 0.111 0.889 39 H 0.115 0.885 40 H 0.118 0.882 41 H 0.133 0.867 42 H 0.364 0.636 43 H 0.261 0.739 44 H 0.155 0.845 45 H 0.132 0.868 46 H 0.132 0.868 47 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.823 8.921 10.362 18.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.010 3.990 3 H 0.140 0.860 4 C 0.286 3.714 5 O -0.394 6.394 6 N -0.357 5.357 7 C 0.033 3.967 8 H 0.120 0.880 9 C -0.124 4.124 10 C -0.107 4.107 11 C -0.134 4.134 12 C -0.147 4.147 13 C -0.146 4.146 14 C -0.096 4.096 15 C -0.098 4.098 16 C 0.103 3.897 17 H 0.093 0.907 18 N -0.378 5.378 19 C -0.380 4.380 20 H 0.110 0.890 21 C -0.183 4.183 22 N -0.574 5.574 23 Si 0.709 3.291 24 H -0.209 1.209 25 H -0.203 1.203 26 H -0.216 1.216 27 N -0.108 5.108 28 C -0.109 4.109 29 C -0.236 4.236 30 C -0.223 4.223 31 C -0.151 4.151 32 H 0.095 0.905 33 H 0.104 0.896 34 H 0.092 0.908 35 H 0.239 0.761 36 H 0.093 0.907 37 H 0.098 0.902 38 H 0.129 0.871 39 H 0.134 0.866 40 H 0.136 0.864 41 H 0.151 0.849 42 H 0.198 0.802 43 H 0.071 0.929 44 H 0.172 0.828 45 H 0.150 0.850 46 H 0.150 0.850 47 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 11.949 8.448 10.032 17.742 hybrid contribution 0.002 -0.966 0.169 0.981 sum 11.951 7.482 10.201 17.403 Atomic orbital electron populations 1.22154 0.90830 1.04652 1.04212 1.21275 0.97074 0.97280 0.83409 0.86017 1.20573 0.80869 0.85212 0.84698 1.90777 1.36949 1.25418 1.86256 1.45820 1.53150 1.31900 1.04860 1.21939 0.92816 0.97968 0.83985 0.87955 1.21322 0.98079 1.01434 0.91581 1.20403 0.94253 1.01389 0.94704 1.20458 0.97945 1.02415 0.92575 1.20914 0.96588 1.01969 0.95226 1.21090 0.92937 1.01254 0.99329 1.20882 1.00200 0.96761 0.91730 1.21513 0.95120 0.97486 0.95727 1.19877 0.88281 0.93527 0.87968 0.90689 1.42775 1.19288 1.08518 1.67210 1.18989 0.92669 0.98459 1.27853 0.88975 1.24624 0.96244 0.97520 0.99878 1.69689 1.09881 1.32065 1.45751 0.86646 0.77355 0.85859 0.79260 1.20885 1.20304 1.21609 1.43719 1.39748 1.10627 1.16737 1.21692 1.05272 0.85647 0.98338 1.20825 1.05121 0.99254 0.98375 1.20821 1.06516 0.93887 1.01090 1.21728 1.01872 0.99767 0.91685 0.90502 0.89587 0.90830 0.76141 0.90695 0.90160 0.87065 0.86647 0.86413 0.84922 0.80196 0.92870 0.82767 0.85002 0.84998 0.82504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.44 9.13 37.16 0.34 -1.10 16 2 C 0.12 1.18 3.36 -69.08 -0.23 0.94 16 3 H 0.12 0.85 8.06 -51.93 -0.42 0.44 16 4 C 0.50 6.69 7.11 -10.99 -0.08 6.62 16 5 O -0.52 -9.12 15.11 5.56 0.08 -9.04 16 6 N -0.71 -8.68 5.03 -52.45 -0.26 -8.95 16 7 C 0.14 2.09 3.12 -66.53 -0.21 1.88 16 8 H 0.10 1.82 7.21 -51.93 -0.37 1.44 16 9 C -0.09 -1.15 6.49 -26.85 -0.17 -1.33 16 10 C -0.11 -1.61 6.14 -104.21 -0.64 -2.25 16 11 C -0.12 -1.61 10.04 -39.53 -0.40 -2.01 16 12 C -0.13 -1.76 10.05 -39.62 -0.40 -2.16 16 13 C -0.13 -1.94 10.05 -39.62 -0.40 -2.34 16 14 C -0.08 -1.38 9.89 -39.54 -0.39 -1.77 16 15 C -0.09 -1.64 5.79 -104.20 -0.60 -2.25 16 16 C 0.21 3.73 3.22 -68.05 -0.22 3.51 16 17 H 0.08 1.27 7.77 -51.93 -0.40 0.86 16 18 N -0.74 -15.99 4.96 -53.55 -0.27 -16.26 16 19 C -0.25 -6.43 9.85 -15.06 -0.15 -6.58 16 20 H 0.09 2.52 8.06 -52.49 -0.42 2.10 16 21 C 0.01 0.39 5.50 -17.43 -0.10 0.29 16 22 N -0.93 -27.58 13.97 55.49 0.78 -26.81 16 23 Si 0.88 21.52 27.73 -169.99 -4.71 16.81 16 24 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 25 H -0.28 -6.52 6.52 56.52 0.37 -6.15 16 26 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 27 N -0.43 -5.26 2.40 -111.26 -0.27 -5.53 16 28 C 0.02 0.28 9.57 -16.75 -0.16 0.12 16 29 C -0.21 -2.76 10.86 -39.78 -0.43 -3.19 16 30 C -0.20 -2.38 10.86 -39.78 -0.43 -2.81 16 31 C -0.02 -0.25 11.39 -16.75 -0.19 -0.44 16 32 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.09 0.66 7.56 -51.93 -0.39 0.27 16 34 H 0.07 0.79 7.91 -51.93 -0.41 0.38 16 35 H 0.40 3.89 7.85 -40.82 -0.32 3.57 16 36 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 37 H 0.08 0.94 8.08 -51.93 -0.42 0.52 16 38 H 0.11 1.29 8.06 -52.49 -0.42 0.86 16 39 H 0.12 1.26 8.06 -52.49 -0.42 0.84 16 40 H 0.12 1.54 8.06 -52.49 -0.42 1.12 16 41 H 0.13 2.64 7.57 -52.49 -0.40 2.24 16 42 H 0.36 8.20 5.45 -40.82 -0.22 7.98 16 43 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 44 H 0.15 2.09 8.06 -52.48 -0.42 1.67 16 45 H 0.13 1.51 8.06 -52.49 -0.42 1.09 16 46 H 0.13 1.30 8.06 -52.48 -0.42 0.88 16 47 H 0.16 1.28 8.06 -52.49 -0.42 0.86 16 LS Contribution 388.86 15.07 5.86 5.86 Total: -1.00 -32.90 388.86 -10.41 -43.30 By element: Atomic # 1 Polarization: 22.22 SS G_CDS: -6.76 Total: 15.47 kcal Atomic # 6 Polarization: -10.00 SS G_CDS: -4.86 Total: -14.85 kcal Atomic # 7 Polarization: -57.52 SS G_CDS: -0.02 Total: -57.55 kcal Atomic # 8 Polarization: -9.12 SS G_CDS: 0.08 Total: -9.04 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -4.71 Total: 16.81 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -32.90 -10.41 -43.30 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000960260542.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.756 kcal (2) G-P(sol) polarization free energy of solvation -32.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.301 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds