Wall clock time and date at job start Tue Mar 31 2020 23:23:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08995 * 109.47270 * 2 1 4 4 C 1.50697 * 109.47217 * 239.99244 * 2 1 3 5 5 O 1.21275 * 120.00440 * 239.99902 * 4 2 1 6 6 N 1.34777 * 119.99667 * 60.00088 * 4 2 1 7 7 C 1.46503 * 120.00004 * 179.97438 * 6 4 2 8 8 H 1.09002 * 110.88489 * 31.48860 * 7 6 4 9 9 C 1.54347 * 110.82301 * 267.96931 * 7 6 4 10 10 C 1.51364 * 105.17093 * 215.42517 * 9 7 6 11 11 C 1.38495 * 130.39037 * 197.18865 * 10 9 7 12 12 C 1.38107 * 120.21768 * 179.97438 * 11 10 9 13 13 C 1.38262 * 119.93116 * 0.02562 * 12 11 10 14 14 C 1.38101 * 119.93360 * 359.97438 * 13 12 11 15 15 C 1.38217 * 109.76098 * 17.19348 * 10 9 7 16 16 C 1.51377 * 109.75725 * 359.97438 * 15 10 9 17 17 H 1.08997 * 110.30083 * 101.83485 * 16 15 10 18 18 N 1.46498 * 110.30176 * 223.88731 * 16 15 10 19 19 C 1.36935 * 120.00239 * 273.54361 * 18 16 15 20 20 H 1.07998 * 119.99613 * 0.02562 * 19 18 16 21 21 C 1.38806 * 120.00008 * 180.02562 * 19 18 16 22 22 N 1.31624 * 120.00103 * 180.02562 * 21 19 18 23 23 Si 1.86803 * 120.00201 * 359.72443 * 21 19 18 24 24 H 1.48501 * 109.47085 * 270.27640 * 23 21 19 25 25 H 1.48497 * 109.46789 * 30.27649 * 23 21 19 26 26 H 1.48490 * 109.47245 * 150.27799 * 23 21 19 27 27 N 1.46503 * 109.46974 * 119.99478 * 2 1 3 28 28 C 1.36346 * 125.63694 * 59.69796 * 27 2 1 29 29 C 1.34846 * 108.22020 * 179.82846 * 28 27 2 30 30 C 1.40897 * 107.41459 * 0.41983 * 29 28 27 31 31 C 1.34852 * 107.41850 * 359.73920 * 30 29 28 32 32 H 1.08999 * 109.47079 * 300.00280 * 1 2 3 33 33 H 1.08997 * 109.47277 * 60.00712 * 1 2 3 34 34 H 1.09003 * 109.47502 * 180.02562 * 1 2 3 35 35 H 0.96998 * 120.00287 * 0.02562 * 6 4 2 36 36 H 1.09004 * 110.29659 * 96.50372 * 9 7 6 37 37 H 1.08994 * 110.30120 * 334.35369 * 9 7 6 38 38 H 1.08002 * 119.89369 * 359.97438 * 11 10 9 39 39 H 1.07997 * 120.03435 * 180.02562 * 12 11 10 40 40 H 1.07997 * 120.02838 * 180.02562 * 13 12 11 41 41 H 1.07999 * 119.89253 * 179.97438 * 14 13 12 42 42 H 0.97004 * 119.99747 * 93.55100 * 18 16 15 43 43 H 0.96999 * 120.00174 * 179.72503 * 22 21 19 44 44 H 1.08004 * 125.88788 * 359.95210 * 28 27 2 45 45 H 1.08001 * 126.29548 * 180.16213 * 29 28 27 46 46 H 1.08004 * 126.29132 * 179.73228 * 30 29 28 47 47 H 1.07996 * 125.88871 * 179.97438 * 31 30 29 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7106 -1.2303 5 8 2.7296 -1.6966 -1.1190 6 7 1.7067 -0.2502 -2.4545 7 6 2.1955 -0.9406 -3.6506 8 1 2.3005 -2.0098 -3.4665 9 6 3.5313 -0.3322 -4.1279 10 6 3.4836 -0.4080 -5.6389 11 6 4.4997 -0.3099 -6.5749 12 6 4.2155 -0.4116 -7.9226 13 6 2.9125 -0.6115 -8.3397 14 6 1.8980 -0.7096 -7.4078 15 6 2.1811 -0.6077 -6.0559 16 6 1.2643 -0.6804 -4.8536 17 1 0.7335 0.2629 -4.7251 18 7 0.3111 -1.7823 -5.0070 19 6 -0.8650 -1.5817 -5.6791 20 1 -1.0896 -0.6112 -6.0964 21 6 -1.7683 -2.6256 -5.8240 22 7 -2.8985 -2.4329 -6.4704 23 14 -1.3762 -4.3062 -5.1089 24 1 -0.6491 -5.1165 -6.1188 25 1 -0.5284 -4.1443 -3.9005 26 1 -2.6393 -4.9936 -4.7389 27 7 2.0183 -0.6905 1.1963 28 6 1.7559 -1.9867 1.5281 29 6 2.3799 -2.2585 2.6922 30 6 3.0441 -1.0844 3.0988 31 6 2.8055 -0.1415 2.1647 32 1 -0.3633 0.5139 0.8899 33 1 -0.3634 0.5137 -0.8900 34 1 -0.3634 -1.0277 0.0005 35 1 1.1494 0.5387 -2.5436 36 1 4.3699 -0.9147 -3.7462 37 1 3.6116 0.7053 -3.8036 38 1 5.5177 -0.1534 -6.2499 39 1 5.0101 -0.3351 -8.6499 40 1 2.6885 -0.6917 -9.3931 41 1 0.8804 -0.8653 -7.7344 42 1 0.5131 -2.6540 -4.6324 43 1 -3.5280 -3.1634 -6.5752 44 1 1.1539 -2.6773 0.9560 45 1 2.3688 -3.2016 3.2185 46 1 3.6356 -0.9619 3.9941 47 1 3.1740 0.8735 2.1811 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000960260542.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:23:33 Heat of formation + Delta-G solvation = 48.026625 kcal Electronic energy + Delta-G solvation = -29247.947756 eV Core-core repulsion = 25396.262575 eV Total energy + Delta-G solvation = -3851.685181 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.36070 -41.42669 -40.19107 -37.62863 -35.88605 -35.37005 -34.00960 -33.18522 -31.51683 -30.41015 -29.61899 -28.97375 -27.88192 -25.76749 -24.59615 -23.48149 -22.18101 -21.94482 -21.58633 -21.28803 -20.58139 -19.77228 -18.71119 -18.08800 -17.40968 -17.15689 -16.51440 -16.38305 -16.15510 -15.79542 -15.48778 -15.21325 -14.94733 -14.80355 -14.57039 -14.45693 -14.27743 -13.95868 -13.92667 -13.75550 -13.51791 -13.41851 -13.25087 -13.05614 -13.01312 -12.95886 -12.76015 -12.56675 -12.34664 -12.25943 -12.04237 -11.83524 -11.65066 -11.16976 -11.02683 -10.25799 -9.64608 -9.53269 -9.44864 -9.36620 -9.00165 -8.05898 -5.38672 0.49184 0.56962 1.26707 1.31813 1.34306 1.38932 1.39557 1.81475 2.19071 2.23054 2.42170 2.89746 3.24580 3.33120 3.43855 3.50856 3.76815 3.80343 3.92238 4.02860 4.07876 4.13072 4.26162 4.30441 4.32469 4.39653 4.54460 4.61544 4.62868 4.73033 4.74897 4.80131 4.81415 4.88484 4.92142 5.08007 5.17232 5.27785 5.36733 5.41065 5.45111 5.61418 5.69513 5.70811 5.87579 6.12220 6.16763 6.19600 6.28702 6.36074 6.54890 7.01004 7.06774 7.75698 7.93411 9.14892 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.009617 B = 0.003838 C = 0.002987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2910.728016 B = 7293.432065 C = 9372.829007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.122 3.878 3 H 0.165 0.835 4 C 0.502 3.498 5 O -0.565 6.565 6 N -0.695 5.695 7 C 0.148 3.852 8 H 0.074 0.926 9 C -0.073 4.073 10 C -0.105 4.105 11 C -0.113 4.113 12 C -0.120 4.120 13 C -0.133 4.133 14 C -0.106 4.106 15 C -0.121 4.121 16 C 0.211 3.789 17 H 0.080 0.920 18 N -0.741 5.741 19 C -0.215 4.215 20 H 0.068 0.932 21 C -0.048 4.048 22 N -0.976 5.976 23 Si 0.936 3.064 24 H -0.286 1.286 25 H -0.264 1.264 26 H -0.296 1.296 27 N -0.436 5.436 28 C -0.008 4.008 29 C -0.226 4.226 30 C -0.218 4.218 31 C -0.015 4.015 32 H 0.093 0.907 33 H 0.100 0.900 34 H 0.048 0.952 35 H 0.418 0.582 36 H 0.079 0.921 37 H 0.107 0.893 38 H 0.144 0.856 39 H 0.152 0.848 40 H 0.133 0.867 41 H 0.096 0.904 42 H 0.361 0.639 43 H 0.257 0.743 44 H 0.142 0.858 45 H 0.137 0.863 46 H 0.150 0.850 47 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.952 11.011 11.469 21.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.016 3.984 3 H 0.182 0.818 4 C 0.288 3.712 5 O -0.443 6.443 6 N -0.348 5.348 7 C 0.042 3.958 8 H 0.093 0.907 9 C -0.112 4.112 10 C -0.106 4.106 11 C -0.131 4.131 12 C -0.137 4.137 13 C -0.151 4.151 14 C -0.125 4.125 15 C -0.124 4.124 16 C 0.102 3.898 17 H 0.097 0.903 18 N -0.382 5.382 19 C -0.346 4.346 20 H 0.086 0.914 21 C -0.241 4.241 22 N -0.626 5.626 23 Si 0.766 3.234 24 H -0.212 1.212 25 H -0.190 1.190 26 H -0.223 1.223 27 N -0.112 5.112 28 C -0.138 4.138 29 C -0.250 4.250 30 C -0.242 4.242 31 C -0.144 4.144 32 H 0.112 0.888 33 H 0.118 0.882 34 H 0.067 0.933 35 H 0.256 0.744 36 H 0.098 0.902 37 H 0.125 0.875 38 H 0.162 0.838 39 H 0.169 0.831 40 H 0.151 0.849 41 H 0.114 0.886 42 H 0.194 0.806 43 H 0.066 0.934 44 H 0.159 0.841 45 H 0.154 0.846 46 H 0.168 0.832 47 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges 15.114 10.590 11.155 21.564 hybrid contribution -0.859 -1.510 -0.231 1.753 sum 14.255 9.079 10.924 20.124 Atomic orbital electron populations 1.22155 0.90035 1.03507 1.05756 1.21471 0.97523 0.98413 0.81017 0.81762 1.21167 0.79919 0.84589 0.85540 1.90763 1.39159 1.27481 1.86895 1.45699 1.53059 1.32005 1.03992 1.21616 0.93280 0.97017 0.83896 0.90748 1.21264 0.96748 1.02826 0.90331 1.20613 0.93432 1.00774 0.95816 1.20878 0.99095 1.00740 0.92362 1.21328 0.96493 0.99814 0.96103 1.21301 0.93241 1.00849 0.99686 1.20774 0.99388 0.99415 0.92925 1.21388 0.96234 0.99599 0.95172 1.20090 0.88019 0.92085 0.89561 0.90277 1.42792 1.19026 1.09684 1.66738 1.18922 0.93279 0.96958 1.25430 0.91385 1.25207 0.96566 1.00728 1.01553 1.69827 1.11323 1.32835 1.48654 0.85703 0.76784 0.82097 0.78864 1.21240 1.18950 1.22254 1.43893 1.39798 1.10178 1.17369 1.21673 1.06420 0.86778 0.98945 1.21103 1.05251 1.00199 0.98449 1.21149 1.07102 0.93640 1.02309 1.22351 1.00332 1.01048 0.90648 0.88817 0.88157 0.93326 0.74360 0.90224 0.87511 0.83784 0.83068 0.84869 0.88577 0.80600 0.93409 0.84086 0.84562 0.83226 0.78904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.49 9.13 71.98 0.66 -1.83 16 2 C 0.12 2.13 3.36 44.24 0.15 2.28 16 3 H 0.17 1.50 8.06 -2.39 -0.02 1.48 16 4 C 0.50 12.56 7.11 87.66 0.62 13.18 16 5 O -0.57 -19.57 15.11 -3.02 -0.05 -19.61 16 6 N -0.70 -15.81 5.03 -438.23 -2.20 -18.02 16 7 C 0.15 4.30 3.12 45.90 0.14 4.45 16 8 H 0.07 2.64 7.21 -2.39 -0.02 2.62 16 9 C -0.07 -1.77 6.49 30.52 0.20 -1.58 16 10 C -0.11 -2.94 6.14 -19.60 -0.12 -3.06 16 11 C -0.11 -2.70 10.04 22.30 0.22 -2.47 16 12 C -0.12 -2.84 10.05 22.24 0.22 -2.62 16 13 C -0.13 -3.85 10.05 22.24 0.22 -3.63 16 14 C -0.11 -3.86 9.89 22.30 0.22 -3.64 16 15 C -0.12 -4.14 5.79 -19.59 -0.11 -4.25 16 16 C 0.21 7.32 3.22 44.91 0.14 7.47 16 17 H 0.08 2.65 7.77 -2.39 -0.02 2.63 16 18 N -0.74 -32.76 4.96 -323.33 -1.60 -34.36 16 19 C -0.22 -11.42 9.85 84.03 0.83 -10.60 16 20 H 0.07 3.91 8.06 -2.91 -0.02 3.88 16 21 C -0.05 -2.75 5.50 84.86 0.47 -2.28 16 22 N -0.98 -60.44 13.97 21.65 0.30 -60.14 16 23 Si 0.94 45.89 27.73 68.60 1.90 47.79 16 24 H -0.29 -14.02 7.11 99.48 0.71 -13.32 16 25 H -0.26 -12.20 6.52 99.48 0.65 -11.55 16 26 H -0.30 -14.69 7.11 99.48 0.71 -13.98 16 27 N -0.44 -9.82 2.40 -505.92 -1.21 -11.03 16 28 C -0.01 -0.22 9.57 83.21 0.80 0.57 16 29 C -0.23 -5.84 10.86 22.14 0.24 -5.60 16 30 C -0.22 -4.83 10.86 22.14 0.24 -4.59 16 31 C -0.02 -0.30 11.39 83.21 0.95 0.65 16 32 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 33 H 0.10 1.29 7.56 -2.39 -0.02 1.27 16 34 H 0.05 1.03 7.91 -2.39 -0.02 1.01 16 35 H 0.42 6.99 7.85 -92.71 -0.73 6.27 16 36 H 0.08 1.92 8.14 -2.38 -0.02 1.90 16 37 H 0.11 2.05 8.08 -2.39 -0.02 2.03 16 38 H 0.14 2.54 8.06 -2.91 -0.02 2.52 16 39 H 0.15 2.53 8.06 -2.91 -0.02 2.51 16 40 H 0.13 3.33 8.06 -2.91 -0.02 3.30 16 41 H 0.10 4.10 7.57 -2.91 -0.02 4.08 16 42 H 0.36 16.42 5.45 -92.71 -0.50 15.92 16 43 H 0.26 15.35 8.31 -92.71 -0.77 14.58 16 44 H 0.14 4.07 8.06 -2.91 -0.02 4.05 16 45 H 0.14 3.19 8.06 -2.91 -0.02 3.16 16 46 H 0.15 2.64 8.06 -2.91 -0.02 2.61 16 47 H 0.19 2.22 8.06 -2.91 -0.02 2.20 16 Total: -1.00 -75.48 388.86 2.93 -72.55 By element: Atomic # 1 Polarization: 40.67 SS G_CDS: -0.30 Total: 40.37 kcal Atomic # 6 Polarization: -23.65 SS G_CDS: 6.09 Total: -17.55 kcal Atomic # 7 Polarization: -118.83 SS G_CDS: -4.72 Total: -123.54 kcal Atomic # 8 Polarization: -19.57 SS G_CDS: -0.05 Total: -19.61 kcal Atomic # 14 Polarization: 45.89 SS G_CDS: 1.90 Total: 47.79 kcal Total: -75.48 2.93 -72.55 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000960260542.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.578 kcal (2) G-P(sol) polarization free energy of solvation -75.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.551 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds