Wall clock time and date at job start Tue Mar 31 2020 23:24:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46502 * 109.46723 * 2 1 4 4 C 1.35528 * 125.67681 * 263.36467 * 3 2 1 5 5 C 1.35461 * 108.86941 * 180.27015 * 4 3 2 6 6 C 1.39837 * 107.86423 * 359.76897 * 5 4 3 7 7 C 1.37653 * 125.67684 * 83.24196 * 3 2 1 8 8 C 1.46680 * 126.23137 * 359.97438 * 7 3 2 9 9 O 1.21692 * 120.00145 * 4.73220 * 8 7 3 10 10 N 1.34777 * 119.99580 * 184.73813 * 8 7 3 11 11 C 1.46502 * 119.99749 * 174.99259 * 10 8 7 12 12 H 1.08990 * 110.88427 * 31.48190 * 11 10 8 13 13 C 1.54348 * 110.82077 * 267.96763 * 11 10 8 14 14 C 1.51374 * 105.17026 * 268.12367 * 13 11 10 15 15 C 1.38499 * 130.39475 * 163.09634 * 14 13 11 16 16 C 1.38101 * 120.21655 * 180.15116 * 15 14 13 17 17 C 1.38251 * 119.93429 * 359.53911 * 16 15 14 18 18 C 1.38098 * 119.93348 * 0.23159 * 17 16 15 19 19 C 1.38212 * 109.75766 * 342.80959 * 14 13 11 20 20 C 1.51372 * 109.76113 * 0.02562 * 19 14 13 21 21 H 1.09007 * 110.30010 * 136.11149 * 20 19 14 22 22 N 1.46496 * 110.30192 * 258.26152 * 20 19 14 23 23 C 1.36930 * 120.00345 * 273.54491 * 22 20 19 24 24 H 1.07994 * 120.00145 * 0.02562 * 23 22 20 25 25 C 1.38814 * 120.00092 * 180.02562 * 23 22 20 26 26 N 1.31624 * 119.99998 * 180.02562 * 25 23 22 27 27 Si 1.86800 * 119.99977 * 0.02562 * 25 23 22 28 28 H 1.48502 * 109.47103 * 90.00131 * 27 25 23 29 29 H 1.48503 * 109.47206 * 210.00230 * 27 25 23 30 30 H 1.48504 * 109.47196 * 330.00316 * 27 25 23 31 31 H 1.08999 * 109.47186 * 299.99668 * 1 2 3 32 32 H 1.08995 * 109.47502 * 59.99803 * 1 2 3 33 33 H 1.08998 * 109.47276 * 179.97438 * 1 2 3 34 34 H 1.08999 * 109.47186 * 240.00332 * 2 1 3 35 35 H 1.09004 * 109.47264 * 120.00136 * 2 1 3 36 36 H 1.08001 * 125.56872 * 0.02562 * 4 3 2 37 37 H 1.07998 * 126.06686 * 179.74961 * 5 4 3 38 38 H 1.07993 * 126.45621 * 179.97438 * 6 5 4 39 39 H 0.96995 * 120.00284 * 354.98751 * 10 8 7 40 40 H 1.08990 * 110.30446 * 149.19850 * 13 11 10 41 41 H 1.09007 * 110.30159 * 27.04174 * 13 11 10 42 42 H 1.08005 * 119.88956 * 359.69029 * 15 14 13 43 43 H 1.08000 * 120.03093 * 179.75278 * 16 15 14 44 44 H 1.08004 * 120.03028 * 180.20571 * 17 16 15 45 45 H 1.08003 * 119.89108 * 180.02562 * 18 17 16 46 46 H 0.97007 * 119.99513 * 93.54715 * 22 20 19 47 47 H 0.96995 * 119.99682 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.4016 2.0841 -1.0935 5 6 2.7967 3.3198 -0.7038 6 6 2.6517 3.3984 0.6848 7 6 2.1617 2.1820 1.1104 8 6 1.8547 1.8074 2.4949 9 8 1.5120 0.6693 2.7556 10 7 1.9522 2.7239 3.4784 11 6 1.5410 2.3814 4.8421 12 1 1.7122 1.3244 5.0457 13 6 0.0618 2.7531 5.0789 14 6 0.0915 4.1586 5.6402 15 6 -0.9152 5.1037 5.7476 16 6 -0.6508 6.3411 6.3009 17 6 0.6204 6.6350 6.7580 18 6 1.6245 5.6923 6.6560 19 6 1.3624 4.4525 6.0971 20 6 2.2739 3.2648 5.8737 21 1 3.2339 3.5944 5.4761 22 7 2.4667 2.5293 7.1259 23 6 3.4531 2.9074 7.9972 24 1 4.0888 3.7480 7.7614 25 6 3.6361 2.2101 9.1835 26 7 4.5839 2.5738 10.0212 27 14 2.5370 0.7557 9.5910 28 1 3.1444 -0.4891 9.0554 29 1 2.3928 0.6417 11.0646 30 1 1.2001 0.9581 8.9770 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8899 33 1 -0.3634 -1.0276 -0.0005 34 1 1.8933 -0.5138 -0.8900 35 1 1.8934 -0.5139 0.8900 36 1 2.3969 1.7175 -2.1094 37 1 3.1597 4.1048 -1.3507 38 1 2.8807 4.2511 1.3067 39 1 2.2946 3.6102 3.2832 40 1 -0.3899 2.0687 5.7968 41 1 -0.4884 2.7331 4.1381 42 1 -1.9086 4.8748 5.3908 43 1 -1.4371 7.0772 6.3796 44 1 0.8282 7.6010 7.1940 45 1 2.6172 5.9225 7.0136 46 1 1.8954 1.7745 7.3379 47 1 4.7115 2.0868 10.8502 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000960329035.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:24:43 Heat of formation + Delta-G solvation = 58.961893 kcal Electronic energy + Delta-G solvation = -29273.578727 eV Core-core repulsion = 25422.367736 eV Total energy + Delta-G solvation = -3851.210992 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.53284 -40.17309 -38.64242 -36.24305 -34.58521 -33.93259 -32.61538 -31.30672 -30.13731 -29.64648 -29.46461 -27.65233 -26.36827 -23.86850 -23.38701 -22.52225 -21.77324 -20.78837 -20.39346 -20.20436 -19.41857 -18.09970 -17.60997 -16.30998 -15.92724 -15.70938 -15.45827 -14.87468 -14.77371 -14.52086 -14.41930 -14.33622 -13.97818 -13.82888 -13.60345 -13.08892 -12.99878 -12.82544 -12.65719 -12.62659 -12.46220 -12.39621 -12.13297 -11.79251 -11.60319 -11.42977 -11.26029 -11.16368 -10.88717 -10.69568 -10.44368 -10.20019 -9.94127 -9.66330 -9.11844 -8.98407 -8.88548 -8.39323 -8.31558 -8.17944 -7.40125 -5.84392 -3.21651 1.41469 1.76148 1.82551 2.51258 2.63135 3.32278 3.35810 3.38518 3.39499 3.43554 4.16646 4.50373 4.53662 4.61435 4.75108 4.82324 4.83936 4.94540 5.07032 5.20409 5.23820 5.27632 5.36426 5.41166 5.41552 5.45675 5.47349 5.60154 5.60701 5.71219 5.87235 5.88172 5.93050 5.97744 6.02635 6.09665 6.16696 6.26121 6.42106 6.52011 6.59994 6.71230 6.83307 6.87236 6.92833 7.08461 7.15407 7.42252 7.57962 7.87810 8.24737 8.33108 9.08848 9.81433 9.98667 11.33014 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010490 B = 0.003597 C = 0.003087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2668.636996 B = 7782.536631 C = 9069.227487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.095 3.905 3 N -0.407 5.407 4 C 0.011 3.989 5 C -0.208 4.208 6 C -0.141 4.141 7 C -0.047 4.047 8 C 0.589 3.411 9 O -0.549 6.549 10 N -0.700 5.700 11 C 0.136 3.864 12 H 0.110 0.890 13 C -0.088 4.088 14 C -0.099 4.099 15 C -0.115 4.115 16 C -0.129 4.129 17 C -0.126 4.126 18 C -0.084 4.084 19 C -0.095 4.095 20 C 0.213 3.787 21 H 0.072 0.928 22 N -0.728 5.728 23 C -0.247 4.247 24 H 0.093 0.907 25 C 0.012 3.988 26 N -0.928 5.928 27 Si 0.880 3.120 28 H -0.282 1.282 29 H -0.290 1.290 30 H -0.276 1.276 31 H 0.067 0.933 32 H 0.056 0.944 33 H 0.074 0.926 34 H 0.087 0.913 35 H 0.107 0.893 36 H 0.166 0.834 37 H 0.141 0.859 38 H 0.144 0.856 39 H 0.403 0.597 40 H 0.085 0.915 41 H 0.073 0.927 42 H 0.110 0.890 43 H 0.115 0.885 44 H 0.117 0.883 45 H 0.121 0.879 46 H 0.365 0.635 47 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.014 2.094 -21.895 23.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.026 4.026 3 N -0.080 5.080 4 C -0.125 4.125 5 C -0.232 4.232 6 C -0.168 4.168 7 C -0.160 4.160 8 C 0.377 3.623 9 O -0.428 6.428 10 N -0.350 5.350 11 C 0.031 3.969 12 H 0.128 0.872 13 C -0.126 4.126 14 C -0.100 4.100 15 C -0.133 4.133 16 C -0.148 4.148 17 C -0.144 4.144 18 C -0.103 4.103 19 C -0.098 4.098 20 C 0.102 3.898 21 H 0.090 0.910 22 N -0.369 5.369 23 C -0.376 4.376 24 H 0.111 0.889 25 C -0.184 4.184 26 N -0.574 5.574 27 Si 0.710 3.290 28 H -0.208 1.208 29 H -0.216 1.216 30 H -0.202 1.202 31 H 0.086 0.914 32 H 0.075 0.925 33 H 0.092 0.908 34 H 0.105 0.895 35 H 0.125 0.875 36 H 0.183 0.817 37 H 0.159 0.841 38 H 0.161 0.839 39 H 0.238 0.762 40 H 0.104 0.896 41 H 0.091 0.909 42 H 0.128 0.872 43 H 0.133 0.867 44 H 0.135 0.865 45 H 0.139 0.861 46 H 0.198 0.802 47 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -9.170 0.961 -21.509 23.402 hybrid contribution -0.689 -0.426 0.459 0.931 sum -9.860 0.535 -21.051 23.251 Atomic orbital electron populations 1.22059 0.94081 1.03020 1.02813 1.22048 0.95977 0.79638 1.04913 1.44067 1.46874 1.11563 1.05532 1.21987 1.05427 0.93353 0.91690 1.20805 1.09743 0.97445 0.95246 1.21383 1.03680 0.96067 0.95651 1.20079 1.14897 0.92969 0.88070 1.16969 0.77154 0.84785 0.83372 1.90780 1.48818 1.19363 1.83869 1.45480 1.65580 1.15898 1.08030 1.21884 0.93387 1.01338 0.80323 0.87202 1.21437 0.96949 0.93468 1.00760 1.20492 0.94338 0.95351 0.99794 1.20463 0.97994 0.93487 1.01366 1.20872 0.96795 0.96574 1.00528 1.21004 0.93295 0.99350 1.00786 1.20679 0.99577 0.92413 0.97632 1.21598 0.96518 0.95046 0.96652 1.19777 0.95486 0.87732 0.86827 0.90987 1.42617 1.39625 1.35252 1.19455 1.18998 1.07407 1.13261 0.97983 0.88924 1.24632 0.98172 0.98961 0.96658 1.69690 1.33852 1.42312 1.11586 0.86622 0.80869 0.83846 0.77694 1.20809 1.21578 1.20193 0.91422 0.92501 0.90760 0.89490 0.87492 0.81703 0.84137 0.83866 0.76154 0.89626 0.90869 0.87193 0.86730 0.86527 0.86131 0.80178 0.92889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.44 10.23 37.16 0.38 -1.06 16 2 C 0.10 0.90 6.14 -4.04 -0.02 0.88 16 3 N -0.41 -4.51 2.76 -112.87 -0.31 -4.82 16 4 C 0.01 0.10 11.37 -16.91 -0.19 -0.09 16 5 C -0.21 -2.02 10.81 -39.97 -0.43 -2.45 16 6 C -0.14 -1.57 10.35 -39.12 -0.41 -1.97 16 7 C -0.05 -0.59 6.89 -81.98 -0.56 -1.16 16 8 C 0.59 8.66 7.77 -12.85 -0.10 8.56 16 9 O -0.55 -9.36 14.12 5.20 0.07 -9.29 16 10 N -0.70 -9.70 5.09 -53.75 -0.27 -9.98 16 11 C 0.14 2.19 3.06 -66.53 -0.20 1.99 16 12 H 0.11 1.97 7.39 -51.93 -0.38 1.58 16 13 C -0.09 -1.33 6.49 -26.85 -0.17 -1.51 16 14 C -0.10 -1.59 6.14 -104.20 -0.64 -2.23 16 15 C -0.11 -1.68 10.04 -39.54 -0.40 -2.07 16 16 C -0.13 -1.81 10.05 -39.63 -0.40 -2.21 16 17 C -0.13 -1.89 10.05 -39.63 -0.40 -2.29 16 18 C -0.08 -1.46 10.04 -39.54 -0.40 -1.86 16 19 C -0.09 -1.68 5.76 -104.21 -0.60 -2.28 16 20 C 0.21 3.95 3.12 -68.06 -0.21 3.74 16 21 H 0.07 1.35 8.05 -51.93 -0.42 0.93 16 22 N -0.73 -16.71 4.95 -53.55 -0.27 -16.98 16 23 C -0.25 -6.71 10.45 -15.06 -0.16 -6.87 16 24 H 0.09 2.67 8.06 -52.49 -0.42 2.25 16 25 C 0.01 0.35 5.50 -17.43 -0.10 0.26 16 26 N -0.93 -28.54 13.97 55.49 0.78 -27.77 16 27 Si 0.88 21.94 27.74 -169.99 -4.71 17.22 16 28 H -0.28 -7.00 7.11 56.52 0.40 -6.59 16 29 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 30 H -0.28 -6.53 6.52 56.52 0.37 -6.16 16 31 H 0.07 0.77 7.85 -51.93 -0.41 0.37 16 32 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 34 H 0.09 0.58 8.12 -51.93 -0.42 0.16 16 35 H 0.11 1.24 6.62 -51.93 -0.34 0.89 16 36 H 0.17 0.97 8.06 -52.49 -0.42 0.55 16 37 H 0.14 1.06 8.06 -52.49 -0.42 0.63 16 38 H 0.14 1.33 7.45 -52.49 -0.39 0.94 16 39 H 0.40 4.83 7.56 -40.82 -0.31 4.52 16 40 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 41 H 0.07 1.03 8.09 -51.92 -0.42 0.61 16 42 H 0.11 1.36 8.06 -52.48 -0.42 0.94 16 43 H 0.11 1.29 8.06 -52.49 -0.42 0.87 16 44 H 0.12 1.48 8.06 -52.48 -0.42 1.06 16 45 H 0.12 2.14 8.06 -52.48 -0.42 1.72 16 46 H 0.36 8.37 5.64 -40.82 -0.23 8.14 16 47 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 LS Contribution 389.50 15.07 5.87 5.87 Total: -1.00 -32.93 389.50 -10.58 -43.51 By element: Atomic # 1 Polarization: 21.57 SS G_CDS: -6.72 Total: 14.85 kcal Atomic # 6 Polarization: -7.61 SS G_CDS: -5.01 Total: -12.62 kcal Atomic # 7 Polarization: -59.47 SS G_CDS: -0.08 Total: -59.54 kcal Atomic # 8 Polarization: -9.36 SS G_CDS: 0.07 Total: -9.29 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -4.71 Total: 17.22 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -32.93 -10.58 -43.51 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000960329035.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.475 kcal (2) G-P(sol) polarization free energy of solvation -32.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.513 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds