Wall clock time and date at job start Tue Mar 31 2020 23:24:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46502 * 109.46723 * 2 1 4 4 C 1.35528 * 125.67681 * 263.36467 * 3 2 1 5 5 C 1.35461 * 108.86941 * 180.27015 * 4 3 2 6 6 C 1.39837 * 107.86423 * 359.76897 * 5 4 3 7 7 C 1.37653 * 125.67684 * 83.24196 * 3 2 1 8 8 C 1.46680 * 126.23137 * 359.97438 * 7 3 2 9 9 O 1.21692 * 120.00145 * 4.73220 * 8 7 3 10 10 N 1.34777 * 119.99580 * 184.73813 * 8 7 3 11 11 C 1.46502 * 119.99749 * 174.99259 * 10 8 7 12 12 H 1.08990 * 110.88427 * 31.48190 * 11 10 8 13 13 C 1.54348 * 110.82077 * 267.96763 * 11 10 8 14 14 C 1.51374 * 105.17026 * 268.12367 * 13 11 10 15 15 C 1.38499 * 130.39475 * 163.09634 * 14 13 11 16 16 C 1.38101 * 120.21655 * 180.15116 * 15 14 13 17 17 C 1.38251 * 119.93429 * 359.53911 * 16 15 14 18 18 C 1.38098 * 119.93348 * 0.23159 * 17 16 15 19 19 C 1.38212 * 109.75766 * 342.80959 * 14 13 11 20 20 C 1.51372 * 109.76113 * 0.02562 * 19 14 13 21 21 H 1.09007 * 110.30010 * 136.11149 * 20 19 14 22 22 N 1.46496 * 110.30192 * 258.26152 * 20 19 14 23 23 C 1.36930 * 120.00345 * 273.54491 * 22 20 19 24 24 H 1.07994 * 120.00145 * 0.02562 * 23 22 20 25 25 C 1.38814 * 120.00092 * 180.02562 * 23 22 20 26 26 N 1.31624 * 119.99998 * 180.02562 * 25 23 22 27 27 Si 1.86800 * 119.99977 * 0.02562 * 25 23 22 28 28 H 1.48502 * 109.47103 * 90.00131 * 27 25 23 29 29 H 1.48503 * 109.47206 * 210.00230 * 27 25 23 30 30 H 1.48504 * 109.47196 * 330.00316 * 27 25 23 31 31 H 1.08999 * 109.47186 * 299.99668 * 1 2 3 32 32 H 1.08995 * 109.47502 * 59.99803 * 1 2 3 33 33 H 1.08998 * 109.47276 * 179.97438 * 1 2 3 34 34 H 1.08999 * 109.47186 * 240.00332 * 2 1 3 35 35 H 1.09004 * 109.47264 * 120.00136 * 2 1 3 36 36 H 1.08001 * 125.56872 * 0.02562 * 4 3 2 37 37 H 1.07998 * 126.06686 * 179.74961 * 5 4 3 38 38 H 1.07993 * 126.45621 * 179.97438 * 6 5 4 39 39 H 0.96995 * 120.00284 * 354.98751 * 10 8 7 40 40 H 1.08990 * 110.30446 * 149.19850 * 13 11 10 41 41 H 1.09007 * 110.30159 * 27.04174 * 13 11 10 42 42 H 1.08005 * 119.88956 * 359.69029 * 15 14 13 43 43 H 1.08000 * 120.03093 * 179.75278 * 16 15 14 44 44 H 1.08004 * 120.03028 * 180.20571 * 17 16 15 45 45 H 1.08003 * 119.89108 * 180.02562 * 18 17 16 46 46 H 0.97007 * 119.99513 * 93.54715 * 22 20 19 47 47 H 0.96995 * 119.99682 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.4016 2.0841 -1.0935 5 6 2.7967 3.3198 -0.7038 6 6 2.6517 3.3984 0.6848 7 6 2.1617 2.1820 1.1104 8 6 1.8547 1.8074 2.4949 9 8 1.5120 0.6693 2.7556 10 7 1.9522 2.7239 3.4784 11 6 1.5410 2.3814 4.8421 12 1 1.7122 1.3244 5.0457 13 6 0.0618 2.7531 5.0789 14 6 0.0915 4.1586 5.6402 15 6 -0.9152 5.1037 5.7476 16 6 -0.6508 6.3411 6.3009 17 6 0.6204 6.6350 6.7580 18 6 1.6245 5.6923 6.6560 19 6 1.3624 4.4525 6.0971 20 6 2.2739 3.2648 5.8737 21 1 3.2339 3.5944 5.4761 22 7 2.4667 2.5293 7.1259 23 6 3.4531 2.9074 7.9972 24 1 4.0888 3.7480 7.7614 25 6 3.6361 2.2101 9.1835 26 7 4.5839 2.5738 10.0212 27 14 2.5370 0.7557 9.5910 28 1 3.1444 -0.4891 9.0554 29 1 2.3928 0.6417 11.0646 30 1 1.2001 0.9581 8.9770 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8899 33 1 -0.3634 -1.0276 -0.0005 34 1 1.8933 -0.5138 -0.8900 35 1 1.8934 -0.5139 0.8900 36 1 2.3969 1.7175 -2.1094 37 1 3.1597 4.1048 -1.3507 38 1 2.8807 4.2511 1.3067 39 1 2.2946 3.6102 3.2832 40 1 -0.3899 2.0687 5.7968 41 1 -0.4884 2.7331 4.1381 42 1 -1.9086 4.8748 5.3908 43 1 -1.4371 7.0772 6.3796 44 1 0.8282 7.6010 7.1940 45 1 2.6172 5.9225 7.0136 46 1 1.8954 1.7745 7.3379 47 1 4.7115 2.0868 10.8502 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000960329035.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:24:41 Heat of formation + Delta-G solvation = 39.597518 kcal Electronic energy + Delta-G solvation = -29274.418430 eV Core-core repulsion = 25422.367736 eV Total energy + Delta-G solvation = -3852.050694 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -42.38965 -41.42988 -39.79665 -37.59956 -35.92451 -35.10202 -33.97504 -33.04977 -31.62471 -30.60094 -30.21573 -28.81641 -27.91401 -25.09001 -24.50048 -23.93061 -22.94709 -21.84506 -21.67316 -21.30928 -20.50409 -19.77753 -18.77357 -17.62626 -17.10831 -16.87985 -16.50873 -16.39923 -15.91751 -15.77343 -15.67001 -15.47034 -15.33904 -14.84288 -14.70956 -14.52549 -14.32788 -14.26517 -14.01814 -13.59134 -13.46108 -13.20870 -13.10708 -13.06197 -12.89431 -12.80531 -12.66243 -12.43361 -12.21361 -12.13170 -12.04407 -11.82914 -11.68481 -11.11165 -11.03722 -10.27325 -9.67479 -9.66116 -9.49650 -9.34745 -9.14121 -8.05746 -5.40559 0.48420 0.52763 0.57341 1.34957 1.37048 1.43227 1.63821 1.85865 2.31130 2.37596 2.44325 2.90106 3.25197 3.33587 3.62924 3.69565 3.82637 3.85709 4.00052 4.11511 4.13624 4.18719 4.24485 4.30306 4.39019 4.42504 4.46571 4.50362 4.64216 4.70874 4.74721 4.79210 4.86514 4.88262 4.92747 5.15774 5.18152 5.20107 5.28025 5.31106 5.39995 5.62947 5.68928 5.71194 5.84647 5.86948 6.04249 6.16416 6.20555 6.37070 6.49478 7.00219 7.13773 7.73237 7.92436 9.15046 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010490 B = 0.003597 C = 0.003087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2668.636996 B = 7782.536631 C = 9069.227487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.092 3.908 3 N -0.414 5.414 4 C 0.026 3.974 5 C -0.220 4.220 6 C -0.139 4.139 7 C -0.085 4.085 8 C 0.587 3.413 9 O -0.580 6.580 10 N -0.693 5.693 11 C 0.148 3.852 12 H 0.090 0.910 13 C -0.079 4.079 14 C -0.101 4.101 15 C -0.115 4.115 16 C -0.119 4.119 17 C -0.128 4.128 18 C -0.108 4.108 19 C -0.116 4.116 20 C 0.210 3.790 21 H 0.060 0.940 22 N -0.734 5.734 23 C -0.225 4.225 24 H 0.063 0.937 25 C -0.054 4.054 26 N -0.978 5.978 27 Si 0.943 3.057 28 H -0.279 1.279 29 H -0.294 1.294 30 H -0.255 1.255 31 H 0.035 0.965 32 H 0.070 0.930 33 H 0.088 0.912 34 H 0.121 0.879 35 H 0.079 0.921 36 H 0.204 0.796 37 H 0.164 0.836 38 H 0.153 0.847 39 H 0.412 0.588 40 H 0.085 0.915 41 H 0.087 0.913 42 H 0.139 0.861 43 H 0.152 0.848 44 H 0.139 0.861 45 H 0.100 0.900 46 H 0.366 0.634 47 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.665 2.584 -24.830 27.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.028 4.028 3 N -0.087 5.087 4 C -0.110 4.110 5 C -0.244 4.244 6 C -0.166 4.166 7 C -0.198 4.198 8 C 0.377 3.623 9 O -0.462 6.462 10 N -0.344 5.344 11 C 0.042 3.958 12 H 0.108 0.892 13 C -0.118 4.118 14 C -0.102 4.102 15 C -0.133 4.133 16 C -0.137 4.137 17 C -0.145 4.145 18 C -0.127 4.127 19 C -0.119 4.119 20 C 0.101 3.899 21 H 0.078 0.922 22 N -0.376 5.376 23 C -0.356 4.356 24 H 0.081 0.919 25 C -0.246 4.246 26 N -0.628 5.628 27 Si 0.771 3.229 28 H -0.205 1.205 29 H -0.221 1.221 30 H -0.180 1.180 31 H 0.054 0.946 32 H 0.089 0.911 33 H 0.107 0.893 34 H 0.140 0.860 35 H 0.098 0.902 36 H 0.221 0.779 37 H 0.182 0.818 38 H 0.171 0.829 39 H 0.249 0.751 40 H 0.104 0.896 41 H 0.105 0.895 42 H 0.157 0.843 43 H 0.169 0.831 44 H 0.157 0.843 45 H 0.119 0.881 46 H 0.200 0.800 47 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -11.853 1.487 -24.502 27.259 hybrid contribution 0.168 -0.430 1.188 1.274 sum -11.685 1.057 -23.315 26.101 Atomic orbital electron populations 1.21995 0.93707 1.03686 1.01828 1.22136 0.96284 0.79167 1.05231 1.44282 1.46912 1.11999 1.05536 1.22688 1.02788 0.92872 0.92622 1.21170 1.09951 0.98508 0.94744 1.21684 1.02445 0.95677 0.96822 1.19911 1.17935 0.94382 0.87565 1.17305 0.76446 0.84239 0.84305 1.90756 1.50415 1.20549 1.84464 1.45333 1.65660 1.16339 1.07084 1.21533 0.93978 0.99497 0.80801 0.89199 1.21361 0.95919 0.93114 1.01368 1.20616 0.93980 0.95890 0.99718 1.20850 0.98791 0.93130 1.00491 1.21310 0.96968 0.96986 0.98445 1.21284 0.93246 0.99644 1.00373 1.20745 0.99725 0.93401 0.98865 1.21357 0.96982 0.94926 0.98669 1.19882 0.95805 0.88559 0.85659 0.92177 1.42557 1.38882 1.36019 1.20173 1.18928 1.07150 1.11336 0.98156 0.91924 1.25351 1.00055 1.02208 0.96950 1.69853 1.36311 1.44277 1.12338 0.85584 0.79968 0.80320 0.77028 1.20536 1.22051 1.18027 0.94553 0.91111 0.89334 0.86045 0.90247 0.77922 0.81846 0.82920 0.75140 0.89636 0.89482 0.84288 0.83063 0.84303 0.88141 0.80047 0.93277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.56 10.23 71.98 0.74 -1.82 16 2 C 0.09 1.63 6.14 86.38 0.53 2.16 16 3 N -0.41 -8.51 2.76 -511.01 -1.41 -9.92 16 4 C 0.03 0.40 11.37 83.48 0.95 1.34 16 5 C -0.22 -3.67 10.81 22.01 0.24 -3.43 16 6 C -0.14 -2.91 10.35 22.57 0.23 -2.67 16 7 C -0.09 -2.14 6.89 40.35 0.28 -1.86 16 8 C 0.59 17.62 7.77 86.45 0.67 18.29 16 9 O -0.58 -20.49 14.12 -4.32 -0.06 -20.55 16 10 N -0.69 -19.65 5.09 -442.20 -2.25 -21.90 16 11 C 0.15 4.87 3.06 45.90 0.14 5.01 16 12 H 0.09 3.34 7.39 -2.39 -0.02 3.32 16 13 C -0.08 -2.34 6.49 30.52 0.20 -2.14 16 14 C -0.10 -3.11 6.14 -19.59 -0.12 -3.23 16 15 C -0.11 -2.97 10.04 22.30 0.22 -2.75 16 16 C -0.12 -2.90 10.05 22.24 0.22 -2.68 16 17 C -0.13 -3.60 10.05 22.24 0.22 -3.38 16 18 C -0.11 -3.82 10.04 22.30 0.22 -3.59 16 19 C -0.12 -4.16 5.76 -19.59 -0.11 -4.27 16 20 C 0.21 8.09 3.12 44.91 0.14 8.23 16 21 H 0.06 2.41 8.05 -2.38 -0.02 2.39 16 22 N -0.73 -34.64 4.95 -323.34 -1.60 -36.24 16 23 C -0.23 -12.75 10.45 84.04 0.88 -11.87 16 24 H 0.06 3.85 8.06 -2.91 -0.02 3.83 16 25 C -0.05 -3.17 5.50 84.86 0.47 -2.70 16 26 N -0.98 -62.63 13.97 21.65 0.30 -62.32 16 27 Si 0.94 46.29 27.74 68.60 1.90 48.20 16 28 H -0.28 -13.48 7.11 99.48 0.71 -12.77 16 29 H -0.29 -14.55 7.11 99.48 0.71 -13.84 16 30 H -0.26 -11.51 6.52 99.48 0.65 -10.87 16 31 H 0.04 0.83 7.85 -2.39 -0.02 0.81 16 32 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 33 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 34 H 0.12 1.26 8.12 -2.39 -0.02 1.24 16 35 H 0.08 1.87 6.62 -2.39 -0.02 1.85 16 36 H 0.20 1.39 8.06 -2.91 -0.02 1.37 16 37 H 0.16 1.89 8.06 -2.91 -0.02 1.87 16 38 H 0.15 2.70 7.45 -2.91 -0.02 2.67 16 39 H 0.41 10.07 7.56 -92.71 -0.70 9.37 16 40 H 0.09 2.53 8.14 -2.39 -0.02 2.51 16 41 H 0.09 2.32 8.09 -2.38 -0.02 2.30 16 42 H 0.14 2.81 8.06 -2.91 -0.02 2.79 16 43 H 0.15 2.61 8.06 -2.91 -0.02 2.59 16 44 H 0.14 3.22 8.06 -2.91 -0.02 3.19 16 45 H 0.10 3.82 8.06 -2.91 -0.02 3.80 16 46 H 0.37 16.91 5.64 -92.70 -0.52 16.39 16 47 H 0.26 15.82 8.31 -92.71 -0.77 15.05 16 Total: -1.00 -74.87 389.50 2.71 -72.16 By element: Atomic # 1 Polarization: 42.23 SS G_CDS: -0.29 Total: 41.94 kcal Atomic # 6 Polarization: -17.47 SS G_CDS: 6.12 Total: -11.35 kcal Atomic # 7 Polarization: -125.43 SS G_CDS: -4.96 Total: -130.39 kcal Atomic # 8 Polarization: -20.49 SS G_CDS: -0.06 Total: -20.55 kcal Atomic # 14 Polarization: 46.29 SS G_CDS: 1.90 Total: 48.20 kcal Total: -74.87 2.71 -72.16 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000960329035.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.754 kcal (2) G-P(sol) polarization free energy of solvation -74.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.156 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds