Wall clock time and date at job start Tue Mar 31 2020 23:23:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46508 * 109.46944 * 2 1 4 4 C 1.38139 * 125.60494 * 90.71446 * 3 2 1 5 5 C 1.47061 * 125.43415 * 359.96229 * 4 3 2 6 6 O 1.21646 * 119.99625 * 4.54977 * 5 4 3 7 7 N 1.34770 * 120.00302 * 184.27648 * 5 4 3 8 8 C 1.46503 * 120.00296 * 175.35514 * 7 5 4 9 9 H 1.09005 * 115.51325 * 9.41209 * 8 7 5 10 10 C 1.53004 * 117.44358 * 224.00430 * 8 7 5 11 11 H 1.09003 * 119.53595 * 4.11587 * 10 8 7 12 12 C 1.54437 * 118.09140 * 160.74069 * 10 8 7 13 13 N 1.48140 * 104.55955 * 87.29221 * 12 10 8 14 14 C 1.36935 * 127.83915 * 140.40190 * 13 12 10 15 15 H 1.07999 * 120.00225 * 198.07846 * 14 13 12 16 16 C 1.38818 * 120.00091 * 18.07506 * 14 13 12 17 17 N 1.31614 * 119.99800 * 356.64142 * 16 14 13 18 18 Si 1.86800 * 120.00098 * 176.64157 * 16 14 13 19 19 H 1.48503 * 109.46872 * 60.00025 * 18 16 14 20 20 H 1.48493 * 109.47083 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.47081 * 300.00279 * 18 16 14 22 22 C 1.48149 * 104.32548 * 320.40035 * 13 12 10 23 23 C 1.52994 * 117.44624 * 154.83449 * 8 7 5 24 24 H 1.09000 * 119.53957 * 354.27776 * 23 8 7 25 25 C 1.35868 * 109.13762 * 179.70109 * 4 3 2 26 26 C 1.41587 * 107.72566 * 0.25962 * 25 4 3 27 27 C 1.40111 * 133.37841 * 180.02562 * 26 25 4 28 28 C 1.36437 * 119.82724 * 179.97438 * 27 26 25 29 29 C 1.38939 * 120.61598 * 0.03266 * 28 27 26 30 30 C 1.37666 * 120.65067 * 359.97438 * 29 28 27 31 31 C 1.37482 * 125.60439 * 270.86841 * 3 2 1 32 32 H 1.08995 * 109.47234 * 300.00178 * 1 2 3 33 33 H 1.09003 * 109.46841 * 60.00393 * 1 2 3 34 34 H 1.08998 * 109.46465 * 179.97438 * 1 2 3 35 35 H 1.09000 * 109.47623 * 239.99577 * 2 1 3 36 36 H 1.08999 * 109.47186 * 119.99243 * 2 1 3 37 37 H 0.97005 * 120.00171 * 355.35103 * 7 5 4 38 38 H 1.08994 * 110.44599 * 328.51944 * 12 10 8 39 39 H 1.09004 * 110.42189 * 206.05390 * 12 10 8 40 40 H 0.97000 * 119.99963 * 180.02562 * 17 16 14 41 41 H 1.09002 * 110.40470 * 280.80497 * 22 13 12 42 42 H 1.08994 * 110.40938 * 158.37033 * 22 13 12 43 43 H 1.07996 * 126.13621 * 180.29995 * 25 4 3 44 44 H 1.08000 * 120.08458 * 359.97438 * 27 26 25 45 45 H 1.07996 * 119.69126 * 180.02562 * 28 27 26 46 46 H 1.08004 * 119.67392 * 179.97438 * 29 28 27 47 47 H 1.08002 * 120.09494 * 180.02562 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2996 2.1349 1.1231 5 6 2.1559 1.6789 2.5138 6 8 1.8399 0.5275 2.7467 7 7 2.3798 2.5350 3.5303 8 6 2.1386 2.1111 4.9117 9 1 1.9346 1.0490 5.0481 10 6 1.4124 3.0926 5.8339 11 1 1.0401 4.0341 5.4301 12 6 0.7510 2.5349 7.1132 13 7 1.8285 2.5573 8.1296 14 6 1.7280 2.8942 9.4530 15 1 2.6146 3.1510 10.0137 16 6 0.4866 2.9057 10.0740 17 7 -0.6009 2.6575 9.3755 18 14 0.3595 3.2735 11.9010 19 1 0.9093 4.6259 12.1731 20 1 -1.0649 3.2246 12.3178 21 1 1.1332 2.2618 12.6646 22 6 3.0395 2.1325 7.3894 23 6 2.9198 2.8265 6.0155 24 1 3.6889 3.5507 5.7467 25 6 2.7357 3.3627 0.7379 26 6 2.7278 3.3985 -0.6775 27 6 3.0678 4.3805 -1.6172 28 6 2.9525 4.1132 -2.9502 29 6 2.4997 2.8744 -3.3868 30 6 2.1593 1.8932 -2.4832 31 6 2.2691 2.1416 -1.1177 32 1 -0.3633 0.5138 0.8899 33 1 -0.3633 0.5138 -0.8901 34 1 -0.3632 -1.0277 -0.0005 35 1 1.8934 -0.5139 -0.8899 36 1 1.8934 -0.5137 0.8900 37 1 2.7008 3.4319 3.3472 38 1 0.4046 1.5146 6.9490 39 1 -0.0767 3.1731 7.4226 40 1 -1.4685 2.6659 9.8093 41 1 3.0504 1.0492 7.2683 42 1 3.9384 2.4670 7.9072 43 1 3.0352 4.1668 1.3936 44 1 3.4203 5.3466 -1.2872 45 1 3.2156 4.8717 -3.6726 46 1 2.4139 2.6793 -4.4456 47 1 1.8087 0.9333 -2.8325 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000962758770.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:23:59 Heat of formation + Delta-G solvation = 90.165133 kcal Electronic energy + Delta-G solvation = -28329.438011 eV Core-core repulsion = 24479.580093 eV Total energy + Delta-G solvation = -3849.857918 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.90478 -39.70325 -38.36143 -37.09837 -34.85410 -34.09251 -32.66205 -31.33686 -30.47005 -29.38097 -28.72278 -27.15268 -25.80096 -24.32026 -23.86314 -22.02656 -21.59186 -21.04756 -20.47229 -19.80482 -19.30346 -17.66230 -17.11784 -16.85974 -16.64715 -15.94432 -15.64469 -15.08553 -14.74746 -14.71538 -14.48436 -14.29122 -13.95027 -13.67652 -13.49577 -13.30075 -13.15723 -12.89189 -12.76630 -12.33602 -12.26687 -11.98703 -11.64698 -11.47407 -11.41764 -11.36718 -11.15350 -11.05199 -10.85383 -10.41670 -10.24517 -10.20317 -10.04809 -9.98044 -9.79335 -9.23867 -8.76111 -8.52608 -8.31811 -7.93287 -6.87028 -5.80319 -3.18905 0.54507 1.38740 1.90050 2.27383 3.14702 3.18662 3.37774 3.42445 3.43496 3.65950 4.27949 4.35012 4.40050 4.46266 4.49324 4.73532 4.85874 4.87295 5.04771 5.10679 5.11225 5.16528 5.28826 5.33382 5.36058 5.40566 5.48330 5.55098 5.59850 5.63276 5.76479 5.80509 5.87304 5.91152 6.07763 6.17767 6.21557 6.34448 6.38322 6.46493 6.50158 6.66108 6.75711 6.84305 6.86458 7.00126 7.34646 7.45202 7.56317 7.71858 8.09498 8.22788 9.09663 9.71357 10.48497 11.31551 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.024507 B = 0.002090 C = 0.002012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1142.235009 B =13393.144203 C =13916.552806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.098 3.902 3 N -0.445 5.445 4 C 0.032 3.968 5 C 0.583 3.417 6 O -0.536 6.536 7 N -0.681 5.681 8 C 0.094 3.906 9 H 0.133 0.867 10 C -0.176 4.176 11 H 0.103 0.897 12 C 0.180 3.820 13 N -0.593 5.593 14 C -0.228 4.228 15 H 0.077 0.923 16 C -0.004 4.004 17 N -0.915 5.915 18 Si 0.914 3.086 19 H -0.284 1.284 20 H -0.289 1.289 21 H -0.283 1.283 22 C 0.155 3.845 23 C -0.182 4.182 24 H 0.105 0.895 25 C -0.147 4.147 26 C -0.115 4.115 27 C -0.063 4.063 28 C -0.151 4.151 29 C -0.094 4.094 30 C -0.128 4.128 31 C 0.108 3.892 32 H 0.065 0.935 33 H 0.056 0.944 34 H 0.075 0.925 35 H 0.083 0.917 36 H 0.113 0.887 37 H 0.402 0.598 38 H 0.024 0.976 39 H 0.102 0.898 40 H 0.256 0.744 41 H 0.028 0.972 42 H 0.052 0.948 43 H 0.151 0.849 44 H 0.124 0.876 45 H 0.122 0.878 46 H 0.125 0.875 47 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.307 0.657 -25.831 26.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.023 4.023 3 N -0.125 5.125 4 C -0.079 4.079 5 C 0.370 3.630 6 O -0.414 6.414 7 N -0.329 5.329 8 C -0.011 4.011 9 H 0.151 0.849 10 C -0.197 4.197 11 H 0.121 0.879 12 C 0.054 3.946 13 N -0.316 5.316 14 C -0.356 4.356 15 H 0.094 0.906 16 C -0.201 4.201 17 N -0.561 5.561 18 Si 0.744 3.256 19 H -0.210 1.210 20 H -0.215 1.215 21 H -0.210 1.210 22 C 0.029 3.971 23 C -0.203 4.203 24 H 0.123 0.877 25 C -0.174 4.174 26 C -0.120 4.120 27 C -0.082 4.082 28 C -0.170 4.170 29 C -0.113 4.113 30 C -0.148 4.148 31 C -0.002 4.002 32 H 0.085 0.915 33 H 0.075 0.925 34 H 0.094 0.906 35 H 0.101 0.899 36 H 0.131 0.869 37 H 0.237 0.763 38 H 0.041 0.959 39 H 0.120 0.880 40 H 0.066 0.934 41 H 0.046 0.954 42 H 0.071 0.929 43 H 0.169 0.831 44 H 0.142 0.858 45 H 0.140 0.860 46 H 0.143 0.857 47 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 5.747 -0.524 -25.349 25.997 hybrid contribution 0.062 0.746 0.682 1.013 sum 5.809 0.222 -24.667 25.343 Atomic orbital electron populations 1.22096 0.94273 1.03059 1.02799 1.22048 0.95799 0.79300 1.05134 1.44103 1.53374 1.12041 1.03006 1.19864 1.07834 0.92431 0.87731 1.17058 0.77497 0.85319 0.83131 1.90780 1.48039 1.17651 1.84903 1.45048 1.66411 1.16155 1.05305 1.21909 1.04089 0.98608 0.76498 0.84898 1.24808 0.95278 1.00216 0.99447 0.87908 1.21251 0.92549 0.98478 0.82369 1.45152 1.03411 1.77282 1.05798 1.18941 0.93700 1.39485 0.83508 0.90560 1.24980 0.95697 1.01158 0.98245 1.69805 0.97476 1.54333 1.34514 0.86173 0.76748 0.78099 0.84578 1.21023 1.21517 1.20971 1.21140 0.91854 0.95636 0.88505 1.24298 0.95932 1.03805 0.96306 0.87739 1.20933 1.06187 0.96239 0.94049 1.18150 1.06206 0.94283 0.93350 1.20398 0.97855 0.97783 0.92125 1.20613 1.03448 0.97444 0.95514 1.20844 0.98547 0.93035 0.98890 1.20043 1.05345 1.00406 0.89042 1.18374 1.02030 0.91362 0.88394 0.91548 0.92487 0.90627 0.89854 0.86850 0.76341 0.95852 0.87974 0.93386 0.95439 0.92926 0.83143 0.85824 0.86007 0.85731 0.86262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.61 10.24 37.16 0.38 -1.23 16 2 C 0.10 1.02 6.27 -4.04 -0.03 0.99 16 3 N -0.44 -5.34 2.82 -110.35 -0.31 -5.66 16 4 C 0.03 0.41 6.81 -82.30 -0.56 -0.15 16 5 C 0.58 8.49 7.78 -12.69 -0.10 8.39 16 6 O -0.54 -9.25 14.09 5.24 0.07 -9.18 16 7 N -0.68 -9.20 5.54 -54.99 -0.30 -9.51 16 8 C 0.09 1.56 5.99 -67.93 -0.41 1.15 16 9 H 0.13 2.48 7.38 -51.93 -0.38 2.09 16 10 C -0.18 -3.29 7.05 -89.27 -0.63 -3.92 16 11 H 0.10 1.79 8.14 -51.93 -0.42 1.37 16 12 C 0.18 4.30 5.78 -2.39 -0.01 4.29 16 13 N -0.59 -15.05 3.38 -168.83 -0.57 -15.63 16 14 C -0.23 -6.29 10.36 -15.06 -0.16 -6.44 16 15 H 0.08 2.02 7.83 -52.49 -0.41 1.61 16 16 C 0.00 -0.10 5.49 -17.43 -0.10 -0.20 16 17 N -0.92 -26.54 10.59 55.49 0.59 -25.95 16 18 Si 0.91 21.74 29.55 -169.99 -5.02 16.71 16 19 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 20 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 21 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 22 C 0.16 3.22 7.04 -2.41 -0.02 3.20 16 23 C -0.18 -3.14 7.05 -89.30 -0.63 -3.77 16 24 H 0.10 1.57 8.14 -51.93 -0.42 1.15 16 25 C -0.15 -1.62 10.29 -39.16 -0.40 -2.02 16 26 C -0.12 -1.28 6.16 -106.93 -0.66 -1.94 16 27 C -0.06 -0.57 10.06 -39.53 -0.40 -0.97 16 28 C -0.15 -1.21 9.97 -39.97 -0.40 -1.60 16 29 C -0.09 -0.74 10.01 -39.53 -0.40 -1.14 16 30 C -0.13 -1.18 10.00 -39.42 -0.39 -1.57 16 31 C 0.11 1.23 6.81 -83.98 -0.57 0.65 16 32 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.11 1.37 6.11 -51.93 -0.32 1.05 16 37 H 0.40 4.30 7.61 -40.82 -0.31 3.99 16 38 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.10 2.74 6.25 -51.93 -0.32 2.42 16 40 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 41 H 0.03 0.58 8.14 -51.93 -0.42 0.15 16 42 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 43 H 0.15 1.24 7.32 -52.49 -0.38 0.86 16 44 H 0.12 0.87 8.06 -52.49 -0.42 0.44 16 45 H 0.12 0.69 8.06 -52.49 -0.42 0.27 16 46 H 0.12 0.67 8.06 -52.48 -0.42 0.25 16 47 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16 LS Contribution 386.78 15.07 5.83 5.83 Total: -1.00 -32.06 386.78 -11.96 -44.02 By element: Atomic # 1 Polarization: 12.40 SS G_CDS: -6.76 Total: 5.64 kcal Atomic # 6 Polarization: -0.81 SS G_CDS: -5.47 Total: -6.29 kcal Atomic # 7 Polarization: -56.14 SS G_CDS: -0.60 Total: -56.74 kcal Atomic # 8 Polarization: -9.25 SS G_CDS: 0.07 Total: -9.18 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -32.06 -11.96 -44.02 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000962758770.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.182 kcal (2) G-P(sol) polarization free energy of solvation -32.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.017 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds