Wall clock time and date at job start Tue Mar 31 2020 23:23:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46508 * 109.46944 * 2 1 4 4 C 1.38139 * 125.60494 * 90.71446 * 3 2 1 5 5 C 1.47061 * 125.43415 * 359.96229 * 4 3 2 6 6 O 1.21646 * 119.99625 * 4.54977 * 5 4 3 7 7 N 1.34770 * 120.00302 * 184.27648 * 5 4 3 8 8 C 1.46503 * 120.00296 * 175.35514 * 7 5 4 9 9 H 1.09005 * 115.51325 * 9.41209 * 8 7 5 10 10 C 1.53004 * 117.44358 * 224.00430 * 8 7 5 11 11 H 1.09003 * 119.53595 * 4.11587 * 10 8 7 12 12 C 1.54437 * 118.09140 * 160.74069 * 10 8 7 13 13 N 1.48140 * 104.55955 * 87.29221 * 12 10 8 14 14 C 1.36935 * 127.83915 * 140.40190 * 13 12 10 15 15 H 1.07999 * 120.00225 * 198.07846 * 14 13 12 16 16 C 1.38818 * 120.00091 * 18.07506 * 14 13 12 17 17 N 1.31614 * 119.99800 * 356.64142 * 16 14 13 18 18 Si 1.86800 * 120.00098 * 176.64157 * 16 14 13 19 19 H 1.48503 * 109.46872 * 60.00025 * 18 16 14 20 20 H 1.48493 * 109.47083 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.47081 * 300.00279 * 18 16 14 22 22 C 1.48149 * 104.32548 * 320.40035 * 13 12 10 23 23 C 1.52994 * 117.44624 * 154.83449 * 8 7 5 24 24 H 1.09000 * 119.53957 * 354.27776 * 23 8 7 25 25 C 1.35868 * 109.13762 * 179.70109 * 4 3 2 26 26 C 1.41587 * 107.72566 * 0.25962 * 25 4 3 27 27 C 1.40111 * 133.37841 * 180.02562 * 26 25 4 28 28 C 1.36437 * 119.82724 * 179.97438 * 27 26 25 29 29 C 1.38939 * 120.61598 * 0.03266 * 28 27 26 30 30 C 1.37666 * 120.65067 * 359.97438 * 29 28 27 31 31 C 1.37482 * 125.60439 * 270.86841 * 3 2 1 32 32 H 1.08995 * 109.47234 * 300.00178 * 1 2 3 33 33 H 1.09003 * 109.46841 * 60.00393 * 1 2 3 34 34 H 1.08998 * 109.46465 * 179.97438 * 1 2 3 35 35 H 1.09000 * 109.47623 * 239.99577 * 2 1 3 36 36 H 1.08999 * 109.47186 * 119.99243 * 2 1 3 37 37 H 0.97005 * 120.00171 * 355.35103 * 7 5 4 38 38 H 1.08994 * 110.44599 * 328.51944 * 12 10 8 39 39 H 1.09004 * 110.42189 * 206.05390 * 12 10 8 40 40 H 0.97000 * 119.99963 * 180.02562 * 17 16 14 41 41 H 1.09002 * 110.40470 * 280.80497 * 22 13 12 42 42 H 1.08994 * 110.40938 * 158.37033 * 22 13 12 43 43 H 1.07996 * 126.13621 * 180.29995 * 25 4 3 44 44 H 1.08000 * 120.08458 * 359.97438 * 27 26 25 45 45 H 1.07996 * 119.69126 * 180.02562 * 28 27 26 46 46 H 1.08004 * 119.67392 * 179.97438 * 29 28 27 47 47 H 1.08002 * 120.09494 * 180.02562 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2996 2.1349 1.1231 5 6 2.1559 1.6789 2.5138 6 8 1.8399 0.5275 2.7467 7 7 2.3798 2.5350 3.5303 8 6 2.1386 2.1111 4.9117 9 1 1.9346 1.0490 5.0481 10 6 1.4124 3.0926 5.8339 11 1 1.0401 4.0341 5.4301 12 6 0.7510 2.5349 7.1132 13 7 1.8285 2.5573 8.1296 14 6 1.7280 2.8942 9.4530 15 1 2.6146 3.1510 10.0137 16 6 0.4866 2.9057 10.0740 17 7 -0.6009 2.6575 9.3755 18 14 0.3595 3.2735 11.9010 19 1 0.9093 4.6259 12.1731 20 1 -1.0649 3.2246 12.3178 21 1 1.1332 2.2618 12.6646 22 6 3.0395 2.1325 7.3894 23 6 2.9198 2.8265 6.0155 24 1 3.6889 3.5507 5.7467 25 6 2.7357 3.3627 0.7379 26 6 2.7278 3.3985 -0.6775 27 6 3.0678 4.3805 -1.6172 28 6 2.9525 4.1132 -2.9502 29 6 2.4997 2.8744 -3.3868 30 6 2.1593 1.8932 -2.4832 31 6 2.2691 2.1416 -1.1177 32 1 -0.3633 0.5138 0.8899 33 1 -0.3633 0.5138 -0.8901 34 1 -0.3632 -1.0277 -0.0005 35 1 1.8934 -0.5139 -0.8899 36 1 1.8934 -0.5137 0.8900 37 1 2.7008 3.4319 3.3472 38 1 0.4046 1.5146 6.9490 39 1 -0.0767 3.1731 7.4226 40 1 -1.4685 2.6659 9.8093 41 1 3.0504 1.0492 7.2683 42 1 3.9384 2.4670 7.9072 43 1 3.0352 4.1668 1.3936 44 1 3.4203 5.3466 -1.2872 45 1 3.2156 4.8717 -3.6726 46 1 2.4139 2.6793 -4.4456 47 1 1.8087 0.9333 -2.8325 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000962758770.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:23:58 Heat of formation + Delta-G solvation = 72.528945 kcal Electronic energy + Delta-G solvation = -28330.202773 eV Core-core repulsion = 24479.580093 eV Total energy + Delta-G solvation = -3850.622680 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -42.71178 -40.99859 -39.73451 -37.86494 -36.22546 -35.20967 -34.21745 -32.25676 -31.99221 -30.23326 -29.54843 -28.90855 -27.62291 -25.36256 -24.67355 -23.40123 -22.45233 -22.04298 -21.93148 -20.95598 -20.80843 -18.91240 -18.58625 -17.94075 -17.67971 -17.00797 -16.69033 -16.55126 -16.05060 -15.57863 -15.51223 -15.40032 -15.08005 -15.02956 -14.68067 -14.62405 -14.23743 -13.95457 -13.78085 -13.64199 -13.28370 -13.20465 -13.07802 -12.96273 -12.70137 -12.61944 -12.24836 -12.21349 -12.15373 -12.03893 -11.92395 -11.78287 -11.68558 -11.18051 -10.88120 -10.76772 -10.68534 -9.82997 -9.17593 -8.90266 -8.67444 -7.90016 -5.31310 -0.24517 0.70292 1.05240 1.36201 1.46868 1.50721 1.56820 2.10742 2.15478 2.48171 2.84442 2.98360 3.27894 3.41525 3.61250 3.65350 3.73566 3.83038 3.89966 4.06828 4.11165 4.12881 4.24551 4.31885 4.36660 4.38181 4.46543 4.51512 4.58512 4.71235 4.73602 4.75442 4.87638 4.89984 4.90853 4.99685 5.09283 5.14133 5.27496 5.37024 5.44680 5.51860 5.54321 5.66516 5.67669 5.71524 5.76624 6.09617 6.20389 6.26900 6.38768 7.00586 7.00679 7.67017 8.45557 9.21097 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.024507 B = 0.002090 C = 0.002012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1142.235009 B =13393.144203 C =13916.552806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.097 3.903 3 N -0.454 5.454 4 C -0.002 4.002 5 C 0.584 3.416 6 O -0.571 6.571 7 N -0.668 5.668 8 C 0.117 3.883 9 H 0.109 0.891 10 C -0.182 4.182 11 H 0.122 0.878 12 C 0.184 3.816 13 N -0.618 5.618 14 C -0.241 4.241 15 H 0.085 0.915 16 C -0.063 4.063 17 N -0.948 5.948 18 Si 0.983 3.017 19 H -0.273 1.273 20 H -0.295 1.295 21 H -0.277 1.277 22 C 0.148 3.852 23 C -0.158 4.158 24 H 0.142 0.858 25 C -0.130 4.130 26 C -0.142 4.142 27 C -0.069 4.069 28 C -0.153 4.153 29 C -0.086 4.086 30 C -0.144 4.144 31 C 0.094 3.906 32 H 0.035 0.965 33 H 0.065 0.935 34 H 0.090 0.910 35 H 0.108 0.892 36 H 0.091 0.909 37 H 0.419 0.581 38 H -0.007 1.007 39 H 0.068 0.932 40 H 0.250 0.750 41 H 0.022 0.978 42 H 0.067 0.933 43 H 0.176 0.824 44 H 0.144 0.856 45 H 0.149 0.851 46 H 0.153 0.847 47 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.172 2.435 -28.369 29.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.024 4.024 3 N -0.135 5.135 4 C -0.111 4.111 5 C 0.373 3.627 6 O -0.452 6.452 7 N -0.317 5.317 8 C 0.010 3.990 9 H 0.127 0.873 10 C -0.203 4.203 11 H 0.140 0.860 12 C 0.058 3.942 13 N -0.342 5.342 14 C -0.370 4.370 15 H 0.102 0.898 16 C -0.257 4.257 17 N -0.595 5.595 18 Si 0.810 3.190 19 H -0.198 1.198 20 H -0.221 1.221 21 H -0.203 1.203 22 C 0.022 3.978 23 C -0.179 4.179 24 H 0.160 0.840 25 C -0.157 4.157 26 C -0.146 4.146 27 C -0.087 4.087 28 C -0.172 4.172 29 C -0.105 4.105 30 C -0.164 4.164 31 C -0.016 4.016 32 H 0.055 0.945 33 H 0.084 0.916 34 H 0.109 0.891 35 H 0.126 0.874 36 H 0.109 0.891 37 H 0.257 0.743 38 H 0.011 0.989 39 H 0.086 0.914 40 H 0.059 0.941 41 H 0.039 0.961 42 H 0.085 0.915 43 H 0.193 0.807 44 H 0.161 0.839 45 H 0.167 0.833 46 H 0.171 0.829 47 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 7.658 1.280 -27.915 28.975 hybrid contribution -0.475 0.179 1.288 1.385 sum 7.183 1.459 -26.627 27.618 Atomic orbital electron populations 1.22028 0.94063 1.03725 1.01600 1.22060 0.95949 0.79184 1.05178 1.44194 1.53819 1.12362 1.03115 1.19650 1.10947 0.93661 0.86863 1.17371 0.76496 0.84799 0.84079 1.90766 1.49637 1.19247 1.85524 1.44774 1.66319 1.16946 1.03669 1.21412 1.02589 0.96944 0.78006 0.87296 1.24460 0.95951 1.01402 0.98525 0.86035 1.20932 0.92151 0.96293 0.84869 1.45446 1.05148 1.77708 1.05857 1.19362 0.94024 1.38775 0.84810 0.89765 1.25851 0.95465 1.01788 1.02559 1.70038 0.97640 1.55905 1.35933 0.85101 0.76250 0.78348 0.79307 1.19813 1.22109 1.20295 1.21297 0.90711 0.95662 0.90101 1.24220 0.95504 1.03528 0.94625 0.84007 1.21286 1.03931 0.95821 0.94669 1.18459 1.07441 0.95017 0.93706 1.20714 0.97457 0.98179 0.92359 1.21019 1.02383 0.98099 0.95682 1.21281 0.96525 0.92507 1.00180 1.20346 1.06003 1.01712 0.88375 1.18774 1.02188 0.91597 0.89011 0.94541 0.91640 0.89078 0.87420 0.89074 0.74267 0.98910 0.91353 0.94081 0.96064 0.91465 0.80654 0.83859 0.83332 0.82889 0.84812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.12 10.24 71.98 0.74 -2.38 16 2 C 0.10 2.04 6.27 86.38 0.54 2.58 16 3 N -0.45 -10.78 2.82 -503.05 -1.42 -12.20 16 4 C 0.00 -0.04 6.81 39.91 0.27 0.23 16 5 C 0.58 17.13 7.78 86.56 0.67 17.80 16 6 O -0.57 -20.61 14.09 -4.18 -0.06 -20.67 16 7 N -0.67 -17.33 5.54 -446.15 -2.47 -19.81 16 8 C 0.12 3.85 5.99 44.99 0.27 4.12 16 9 H 0.11 4.21 7.38 -2.38 -0.02 4.20 16 10 C -0.18 -6.81 7.05 -9.92 -0.07 -6.88 16 11 H 0.12 4.10 8.14 -2.39 -0.02 4.08 16 12 C 0.18 9.21 5.78 86.55 0.50 9.71 16 13 N -0.62 -32.03 3.38 -688.06 -2.33 -34.36 16 14 C -0.24 -13.47 10.36 84.04 0.87 -12.60 16 15 H 0.08 4.44 7.83 -2.91 -0.02 4.42 16 16 C -0.06 -3.59 5.49 84.86 0.47 -3.12 16 17 N -0.95 -57.24 10.59 21.65 0.23 -57.01 16 18 Si 0.98 45.39 29.55 68.60 2.03 47.42 16 19 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 20 H -0.29 -13.75 7.11 99.48 0.71 -13.05 16 21 H -0.28 -12.39 7.11 99.48 0.71 -11.69 16 22 C 0.15 6.08 7.04 86.53 0.61 6.69 16 23 C -0.16 -5.20 7.05 -9.94 -0.07 -5.27 16 24 H 0.14 3.69 8.14 -2.39 -0.02 3.67 16 25 C -0.13 -2.63 10.29 22.55 0.23 -2.40 16 26 C -0.14 -2.88 6.16 -21.36 -0.13 -3.01 16 27 C -0.07 -1.04 10.06 22.30 0.22 -0.82 16 28 C -0.15 -1.88 9.97 22.02 0.22 -1.66 16 29 C -0.09 -1.06 10.01 22.30 0.22 -0.83 16 30 C -0.14 -2.32 10.00 22.37 0.22 -2.10 16 31 C 0.09 2.00 6.81 39.13 0.27 2.26 16 32 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16 33 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 34 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 35 H 0.11 1.65 8.14 -2.39 -0.02 1.63 16 36 H 0.09 2.34 6.11 -2.39 -0.01 2.32 16 37 H 0.42 7.92 7.61 -92.70 -0.71 7.21 16 38 H -0.01 -0.38 8.14 -2.39 -0.02 -0.40 16 39 H 0.07 3.88 6.25 -2.39 -0.01 3.86 16 40 H 0.25 14.67 8.31 -92.71 -0.77 13.90 16 41 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 42 H 0.07 2.55 8.14 -2.39 -0.02 2.53 16 43 H 0.18 2.39 7.32 -2.91 -0.02 2.37 16 44 H 0.14 1.51 8.06 -2.91 -0.02 1.48 16 45 H 0.15 1.01 8.06 -2.91 -0.02 0.98 16 46 H 0.15 0.98 8.06 -2.91 -0.02 0.95 16 47 H 0.13 1.66 8.06 -2.91 -0.02 1.63 16 Total: -1.00 -73.38 386.78 2.32 -71.06 By element: Atomic # 1 Polarization: 22.95 SS G_CDS: 0.28 Total: 23.23 kcal Atomic # 6 Polarization: -3.74 SS G_CDS: 6.06 Total: 2.32 kcal Atomic # 7 Polarization: -117.38 SS G_CDS: -5.99 Total: -123.37 kcal Atomic # 8 Polarization: -20.61 SS G_CDS: -0.06 Total: -20.67 kcal Atomic # 14 Polarization: 45.39 SS G_CDS: 2.03 Total: 47.42 kcal Total: -73.38 2.32 -71.06 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000962758770.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.588 kcal (2) G-P(sol) polarization free energy of solvation -73.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.059 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds