Wall clock time and date at job start Tue Mar 31 2020 22:26:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 109.45384 * 2 1 4 4 C 1.53044 * 109.46084 * 119.96620 * 2 1 3 5 5 C 1.53190 * 109.31414 * 181.38634 * 4 2 1 6 6 N 1.46927 * 108.77640 * 305.36028 * 5 4 2 7 7 C 1.36930 * 120.63467 * 233.63354 * 6 5 4 8 8 H 1.08001 * 120.00055 * 27.67212 * 7 6 5 9 9 C 1.38810 * 120.00161 * 207.67379 * 7 6 5 10 10 N 1.31615 * 120.00084 * 17.34821 * 9 7 6 11 11 Si 1.86806 * 120.00216 * 197.34918 * 9 7 6 12 12 H 1.48498 * 109.47018 * 59.99861 * 11 9 7 13 13 H 1.48499 * 109.47329 * 180.02562 * 11 9 7 14 14 H 1.48502 * 109.47006 * 300.00114 * 11 9 7 15 15 C 1.46929 * 118.73740 * 53.60571 * 6 5 4 16 16 C 1.53042 * 109.45968 * 240.03050 * 2 1 3 17 17 H 1.09000 * 109.49717 * 298.56711 * 16 2 1 18 18 N 1.46500 * 109.52282 * 58.64726 * 16 2 1 19 19 C 1.34778 * 119.99545 * 204.85280 * 18 16 2 20 20 O 1.21601 * 120.00704 * 0.02562 * 19 18 16 21 21 C 1.47438 * 119.99328 * 179.97438 * 19 18 16 22 22 C 1.38741 * 120.33425 * 359.72977 * 21 19 18 23 23 C 1.38867 * 120.72740 * 179.73394 * 22 21 19 24 24 C 1.36355 * 121.05613 * 0.54596 * 23 22 21 25 25 C 1.40442 * 120.08149 * 359.71886 * 24 23 22 26 26 C 1.40805 * 121.25268 * 180.02562 * 25 24 23 27 27 C 1.36639 * 118.14835 * 180.02562 * 26 25 24 28 28 C 1.39229 * 119.90889 * 359.97438 * 27 26 25 29 29 N 1.31234 * 121.69882 * 0.02713 * 28 27 26 30 30 C 1.33348 * 121.34834 * 359.95250 * 29 28 27 31 31 H 1.08995 * 109.46773 * 300.03889 * 1 2 3 32 32 H 1.08999 * 109.46889 * 60.03944 * 1 2 3 33 33 H 1.08998 * 109.47247 * 180.02562 * 1 2 3 34 34 H 1.09003 * 109.50064 * 61.43125 * 4 2 1 35 35 H 1.09005 * 109.49529 * 301.33083 * 4 2 1 36 36 H 1.08999 * 109.59147 * 65.14402 * 5 4 2 37 37 H 1.08998 * 109.59012 * 185.43161 * 5 4 2 38 38 H 0.97003 * 120.00512 * 179.97438 * 10 9 7 39 39 H 1.08999 * 109.58636 * 66.18133 * 15 6 5 40 40 H 1.08996 * 109.58906 * 186.60438 * 15 6 5 41 41 H 0.96995 * 120.00187 * 24.85999 * 18 16 2 42 42 H 1.07990 * 119.63689 * 359.97438 * 22 21 19 43 43 H 1.08001 * 119.47523 * 180.28871 * 23 22 21 44 44 H 1.08005 * 119.96227 * 179.74268 * 24 23 22 45 45 H 1.07993 * 120.92806 * 0.04205 * 26 25 24 46 46 H 1.08002 * 120.04149 * 180.02562 * 27 26 25 47 47 H 1.08004 * 119.14764 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8930 1.0277 0.0000 4 6 2.0399 -0.7208 1.2501 5 6 3.5714 -0.6886 1.2643 6 7 4.0679 -1.2489 0.0001 7 6 4.9757 -2.2741 0.0001 8 1 5.0084 -2.9664 0.8283 9 6 5.8540 -2.4234 -1.0644 10 7 6.0603 -1.4218 -1.8929 11 14 6.7432 -4.0461 -1.3211 12 1 5.7478 -5.1295 -1.5226 13 1 7.6174 -3.9476 -2.5174 14 1 7.5717 -4.3508 -0.1269 15 6 3.5714 -0.6888 -1.2642 16 6 2.0398 -0.7208 -1.2501 17 1 1.6978 -1.7557 -1.2382 18 7 1.5255 -0.0495 -2.4463 19 6 1.4002 -0.7330 -3.6012 20 8 1.7135 -1.9069 -3.6501 21 6 0.8821 -0.0574 -4.8049 22 6 0.5163 1.2800 -4.7552 23 6 0.0325 1.9258 -5.8853 24 6 -0.1065 1.2630 -7.0688 25 6 0.2468 -0.0930 -7.1620 26 6 0.1138 -0.8012 -8.3717 27 6 0.4761 -2.1185 -8.3907 28 6 0.9611 -2.7219 -7.2335 29 7 1.0831 -2.0573 -6.1085 30 6 0.7475 -0.7695 -6.0236 31 1 -0.3633 0.5144 0.8896 32 1 -0.3633 0.5132 -0.8903 33 1 -0.3634 -1.0276 0.0005 34 1 1.6978 -1.7557 1.2384 35 1 1.6573 -0.2206 2.1399 36 1 3.9143 0.3409 1.3673 37 1 3.9416 -1.2824 2.1000 38 1 6.6743 -1.5259 -2.6366 39 1 3.9143 0.3407 -1.3674 40 1 3.9417 -1.2847 -2.0983 41 1 1.2754 0.8868 -2.4073 42 1 0.6125 1.8258 -3.8283 43 1 -0.2419 2.9686 -5.8250 44 1 -0.4885 1.7816 -7.9358 45 1 -0.2637 -0.3165 -9.2599 46 1 0.3871 -2.6907 -9.3024 47 1 1.2434 -3.7640 -7.2623 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000967268171.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:26:56 Heat of formation + Delta-G solvation = 48.296503 kcal Electronic energy + Delta-G solvation = -29666.062008 eV Core-core repulsion = 25814.388530 eV Total energy + Delta-G solvation = -3851.673478 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -40.99447 -39.27483 -37.53662 -36.88360 -34.24087 -33.46860 -33.02047 -30.95976 -30.64168 -30.40503 -28.53786 -27.25133 -24.74207 -24.05322 -23.58098 -23.38269 -21.81656 -20.94536 -19.97346 -19.30852 -18.31364 -17.64237 -16.90691 -16.68776 -15.97289 -15.38932 -14.90308 -14.80696 -14.59193 -14.13603 -14.01161 -13.84383 -13.66324 -13.51853 -13.33691 -13.12966 -13.08010 -12.78841 -12.35388 -12.22713 -11.91217 -11.83906 -11.60054 -11.53538 -11.46372 -10.83202 -10.66214 -10.61786 -10.46484 -10.38108 -10.11609 -9.89866 -9.83297 -9.60401 -9.40921 -8.93151 -8.92796 -8.45734 -8.34056 -8.27839 -6.58001 -5.67756 -3.10726 0.08214 0.70417 1.70536 2.69449 3.47237 3.53076 3.54902 3.57685 3.59704 4.19329 4.23471 4.43085 4.58715 4.61200 4.68919 4.74616 4.90515 4.98362 5.13345 5.23783 5.31562 5.34993 5.46544 5.53074 5.60269 5.67377 5.74642 5.79241 5.90042 5.97589 6.04373 6.06590 6.08978 6.16145 6.18940 6.30321 6.35551 6.46615 6.52024 6.61696 6.66444 6.80314 6.83167 7.02854 7.07959 7.39374 7.82037 7.91069 7.98481 8.10396 8.56033 8.84393 9.30871 9.95180 10.49810 11.40150 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010897 B = 0.003889 C = 0.003111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2568.797019 B = 7198.271731 C = 8999.049415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.092 4.092 3 H 0.066 0.934 4 C -0.125 4.125 5 C 0.143 3.857 6 N -0.588 5.588 7 C -0.258 4.258 8 H 0.065 0.935 9 C 0.008 3.992 10 N -0.899 5.899 11 Si 0.901 3.099 12 H -0.282 1.282 13 H -0.291 1.291 14 H -0.283 1.283 15 C 0.167 3.833 16 C 0.127 3.873 17 H 0.082 0.918 18 N -0.719 5.719 19 C 0.546 3.454 20 O -0.488 6.488 21 C -0.094 4.094 22 C -0.070 4.070 23 C -0.123 4.123 24 C -0.080 4.080 25 C -0.111 4.111 26 C -0.063 4.063 27 C -0.175 4.175 28 C 0.129 3.871 29 N -0.430 5.430 30 C 0.160 3.840 31 H 0.049 0.951 32 H 0.048 0.952 33 H 0.052 0.948 34 H 0.060 0.940 35 H 0.054 0.946 36 H 0.017 0.983 37 H 0.055 0.945 38 H 0.254 0.746 39 H 0.015 0.985 40 H 0.096 0.904 41 H 0.387 0.613 42 H 0.134 0.866 43 H 0.133 0.867 44 H 0.131 0.869 45 H 0.138 0.862 46 H 0.137 0.863 47 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.528 8.270 -10.552 21.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.111 4.111 3 H 0.084 0.916 4 C -0.165 4.165 5 C 0.016 3.984 6 N -0.311 5.311 7 C -0.387 4.387 8 H 0.083 0.917 9 C -0.191 4.191 10 N -0.542 5.542 11 Si 0.731 3.269 12 H -0.208 1.208 13 H -0.217 1.217 14 H -0.210 1.210 15 C 0.040 3.960 16 C 0.022 3.978 17 H 0.100 0.900 18 N -0.371 5.371 19 C 0.330 3.670 20 O -0.361 6.361 21 C -0.098 4.098 22 C -0.091 4.091 23 C -0.141 4.141 24 C -0.099 4.099 25 C -0.113 4.113 26 C -0.089 4.089 27 C -0.195 4.195 28 C -0.044 4.044 29 N -0.137 5.137 30 C 0.037 3.963 31 H 0.068 0.932 32 H 0.067 0.933 33 H 0.071 0.929 34 H 0.079 0.921 35 H 0.073 0.927 36 H 0.035 0.965 37 H 0.073 0.927 38 H 0.063 0.937 39 H 0.033 0.967 40 H 0.114 0.886 41 H 0.221 0.779 42 H 0.152 0.848 43 H 0.151 0.849 44 H 0.149 0.851 45 H 0.156 0.844 46 H 0.154 0.846 47 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -15.820 7.037 -9.869 19.929 hybrid contribution 0.054 0.211 -1.091 1.113 sum -15.765 7.248 -10.960 20.523 Atomic orbital electron populations 1.21845 0.96074 1.01582 1.00594 1.21305 0.94510 0.99625 0.95671 0.91580 1.22071 0.98968 1.00049 0.95408 1.20947 0.90818 0.96415 0.90206 1.43951 1.48119 1.39812 0.99179 1.19092 1.09878 1.03278 1.06464 0.91700 1.25005 0.97149 0.97324 0.99612 1.70000 1.37417 1.29118 1.17688 0.86388 0.79163 0.84179 0.77156 1.20831 1.21681 1.20967 1.21104 0.86568 0.97363 0.90991 1.21957 0.98227 0.96382 0.81235 0.89971 1.45994 1.66754 1.13805 1.10556 1.17833 0.79601 0.86994 0.82548 1.90896 1.46675 1.14994 1.83552 1.20156 1.02077 0.93839 0.93701 1.21447 0.95457 0.93104 0.99092 1.20817 1.00240 1.00484 0.92577 1.21103 0.97771 0.92656 0.98326 1.18838 1.02381 0.95413 0.94676 1.21421 0.96558 0.94369 0.96566 1.21967 1.01167 0.95984 1.00333 1.23221 0.93037 1.00474 0.87638 1.68383 1.12546 1.06537 1.26184 1.18670 0.95464 0.90317 0.91835 0.93202 0.93301 0.92929 0.92103 0.92685 0.96513 0.92673 0.93655 0.96650 0.88628 0.77883 0.84811 0.84941 0.85067 0.84429 0.84561 0.82318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.93 9.02 37.16 0.34 -1.60 16 2 C -0.09 -1.51 2.27 -90.58 -0.21 -1.72 16 3 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 4 C -0.13 -2.17 5.36 -26.61 -0.14 -2.31 16 5 C 0.14 3.02 6.51 -3.71 -0.02 3.00 16 6 N -0.59 -15.34 2.99 -172.32 -0.52 -15.85 16 7 C -0.26 -7.43 9.59 -15.06 -0.14 -7.58 16 8 H 0.07 1.82 7.89 -52.49 -0.41 1.41 16 9 C 0.01 0.24 4.91 -17.43 -0.09 0.16 16 10 N -0.90 -27.63 11.19 55.49 0.62 -27.00 16 11 Si 0.90 23.22 29.59 -169.99 -5.03 18.19 16 12 H -0.28 -7.31 7.11 56.52 0.40 -6.90 16 13 H -0.29 -7.53 7.11 56.52 0.40 -7.13 16 14 H -0.28 -7.06 7.11 56.52 0.40 -6.66 16 15 C 0.17 4.20 4.89 -3.71 -0.02 4.18 16 16 C 0.13 2.57 2.06 -67.81 -0.14 2.43 16 17 H 0.08 1.91 7.58 -51.93 -0.39 1.52 16 18 N -0.72 -12.45 4.32 -54.76 -0.24 -12.69 16 19 C 0.55 10.70 7.73 -12.51 -0.10 10.60 16 20 O -0.49 -11.92 14.85 5.28 0.08 -11.84 16 21 C -0.09 -1.51 5.91 -104.61 -0.62 -2.13 16 22 C -0.07 -0.81 9.52 -39.16 -0.37 -1.19 16 23 C -0.12 -1.13 9.93 -40.03 -0.40 -1.53 16 24 C -0.08 -0.75 9.75 -39.43 -0.38 -1.13 16 25 C -0.11 -1.36 5.74 -106.82 -0.61 -1.97 16 26 C -0.06 -0.61 9.90 -39.19 -0.39 -1.00 16 27 C -0.17 -1.73 10.03 -39.79 -0.40 -2.13 16 28 C 0.13 1.72 11.15 -17.44 -0.19 1.53 16 29 N -0.43 -7.69 8.44 -10.76 -0.09 -7.79 16 30 C 0.16 2.61 6.61 -84.58 -0.56 2.05 16 31 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.05 0.59 7.35 -51.93 -0.38 0.21 16 33 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 35 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 37 H 0.05 1.14 7.94 -51.93 -0.41 0.73 16 38 H 0.25 7.62 8.31 -40.82 -0.34 7.28 16 39 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 40 H 0.10 2.86 6.03 -51.93 -0.31 2.55 16 41 H 0.39 5.25 6.33 -40.82 -0.26 4.99 16 42 H 0.13 1.20 6.37 -52.49 -0.33 0.87 16 43 H 0.13 0.78 8.06 -52.49 -0.42 0.36 16 44 H 0.13 0.79 8.06 -52.48 -0.42 0.36 16 45 H 0.14 0.84 8.06 -52.49 -0.42 0.41 16 46 H 0.14 0.87 8.06 -52.49 -0.42 0.45 16 47 H 0.16 1.74 8.06 -52.48 -0.42 1.31 16 LS Contribution 378.65 15.07 5.71 5.71 Total: -1.00 -37.11 378.65 -10.63 -47.74 By element: Atomic # 1 Polarization: 10.58 SS G_CDS: -6.72 Total: 3.87 kcal Atomic # 6 Polarization: 4.12 SS G_CDS: -4.45 Total: -0.33 kcal Atomic # 7 Polarization: -63.11 SS G_CDS: -0.22 Total: -63.33 kcal Atomic # 8 Polarization: -11.92 SS G_CDS: 0.08 Total: -11.84 kcal Atomic # 14 Polarization: 23.22 SS G_CDS: -5.03 Total: 18.19 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -37.11 -10.63 -47.74 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000967268171.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.040 kcal (2) G-P(sol) polarization free energy of solvation -37.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.744 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds