Wall clock time and date at job start Tue Mar 31 2020 22:26:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 109.45384 * 2 1 4 4 C 1.53044 * 109.46084 * 119.96620 * 2 1 3 5 5 C 1.53190 * 109.31414 * 181.38634 * 4 2 1 6 6 N 1.46927 * 108.77640 * 305.36028 * 5 4 2 7 7 C 1.36930 * 120.63467 * 233.63354 * 6 5 4 8 8 H 1.08001 * 120.00055 * 27.67212 * 7 6 5 9 9 C 1.38810 * 120.00161 * 207.67379 * 7 6 5 10 10 N 1.31615 * 120.00084 * 17.34821 * 9 7 6 11 11 Si 1.86806 * 120.00216 * 197.34918 * 9 7 6 12 12 H 1.48498 * 109.47018 * 59.99861 * 11 9 7 13 13 H 1.48499 * 109.47329 * 180.02562 * 11 9 7 14 14 H 1.48502 * 109.47006 * 300.00114 * 11 9 7 15 15 C 1.46929 * 118.73740 * 53.60571 * 6 5 4 16 16 C 1.53042 * 109.45968 * 240.03050 * 2 1 3 17 17 H 1.09000 * 109.49717 * 298.56711 * 16 2 1 18 18 N 1.46500 * 109.52282 * 58.64726 * 16 2 1 19 19 C 1.34778 * 119.99545 * 204.85280 * 18 16 2 20 20 O 1.21601 * 120.00704 * 0.02562 * 19 18 16 21 21 C 1.47438 * 119.99328 * 179.97438 * 19 18 16 22 22 C 1.38741 * 120.33425 * 359.72977 * 21 19 18 23 23 C 1.38867 * 120.72740 * 179.73394 * 22 21 19 24 24 C 1.36355 * 121.05613 * 0.54596 * 23 22 21 25 25 C 1.40442 * 120.08149 * 359.71886 * 24 23 22 26 26 C 1.40805 * 121.25268 * 180.02562 * 25 24 23 27 27 C 1.36639 * 118.14835 * 180.02562 * 26 25 24 28 28 C 1.39229 * 119.90889 * 359.97438 * 27 26 25 29 29 N 1.31234 * 121.69882 * 0.02713 * 28 27 26 30 30 C 1.33348 * 121.34834 * 359.95250 * 29 28 27 31 31 H 1.08995 * 109.46773 * 300.03889 * 1 2 3 32 32 H 1.08999 * 109.46889 * 60.03944 * 1 2 3 33 33 H 1.08998 * 109.47247 * 180.02562 * 1 2 3 34 34 H 1.09003 * 109.50064 * 61.43125 * 4 2 1 35 35 H 1.09005 * 109.49529 * 301.33083 * 4 2 1 36 36 H 1.08999 * 109.59147 * 65.14402 * 5 4 2 37 37 H 1.08998 * 109.59012 * 185.43161 * 5 4 2 38 38 H 0.97003 * 120.00512 * 179.97438 * 10 9 7 39 39 H 1.08999 * 109.58636 * 66.18133 * 15 6 5 40 40 H 1.08996 * 109.58906 * 186.60438 * 15 6 5 41 41 H 0.96995 * 120.00187 * 24.85999 * 18 16 2 42 42 H 1.07990 * 119.63689 * 359.97438 * 22 21 19 43 43 H 1.08001 * 119.47523 * 180.28871 * 23 22 21 44 44 H 1.08005 * 119.96227 * 179.74268 * 24 23 22 45 45 H 1.07993 * 120.92806 * 0.04205 * 26 25 24 46 46 H 1.08002 * 120.04149 * 180.02562 * 27 26 25 47 47 H 1.08004 * 119.14764 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8930 1.0277 0.0000 4 6 2.0399 -0.7208 1.2501 5 6 3.5714 -0.6886 1.2643 6 7 4.0679 -1.2489 0.0001 7 6 4.9757 -2.2741 0.0001 8 1 5.0084 -2.9664 0.8283 9 6 5.8540 -2.4234 -1.0644 10 7 6.0603 -1.4218 -1.8929 11 14 6.7432 -4.0461 -1.3211 12 1 5.7478 -5.1295 -1.5226 13 1 7.6174 -3.9476 -2.5174 14 1 7.5717 -4.3508 -0.1269 15 6 3.5714 -0.6888 -1.2642 16 6 2.0398 -0.7208 -1.2501 17 1 1.6978 -1.7557 -1.2382 18 7 1.5255 -0.0495 -2.4463 19 6 1.4002 -0.7330 -3.6012 20 8 1.7135 -1.9069 -3.6501 21 6 0.8821 -0.0574 -4.8049 22 6 0.5163 1.2800 -4.7552 23 6 0.0325 1.9258 -5.8853 24 6 -0.1065 1.2630 -7.0688 25 6 0.2468 -0.0930 -7.1620 26 6 0.1138 -0.8012 -8.3717 27 6 0.4761 -2.1185 -8.3907 28 6 0.9611 -2.7219 -7.2335 29 7 1.0831 -2.0573 -6.1085 30 6 0.7475 -0.7695 -6.0236 31 1 -0.3633 0.5144 0.8896 32 1 -0.3633 0.5132 -0.8903 33 1 -0.3634 -1.0276 0.0005 34 1 1.6978 -1.7557 1.2384 35 1 1.6573 -0.2206 2.1399 36 1 3.9143 0.3409 1.3673 37 1 3.9416 -1.2824 2.1000 38 1 6.6743 -1.5259 -2.6366 39 1 3.9143 0.3407 -1.3674 40 1 3.9417 -1.2847 -2.0983 41 1 1.2754 0.8868 -2.4073 42 1 0.6125 1.8258 -3.8283 43 1 -0.2419 2.9686 -5.8250 44 1 -0.4885 1.7816 -7.9358 45 1 -0.2637 -0.3165 -9.2599 46 1 0.3871 -2.6907 -9.3024 47 1 1.2434 -3.7640 -7.2623 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000967268171.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:26:55 Heat of formation + Delta-G solvation = 22.784079 kcal Electronic energy + Delta-G solvation = -29667.168309 eV Core-core repulsion = 25814.388530 eV Total energy + Delta-G solvation = -3852.779780 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.97351 -40.73246 -39.06742 -37.88322 -36.07994 -34.71087 -34.36152 -32.85872 -31.65913 -31.42525 -30.05951 -28.96943 -26.03491 -25.61605 -24.72410 -24.38710 -23.25752 -22.63190 -21.44878 -20.81545 -19.21601 -18.80579 -18.73143 -17.84525 -17.05903 -17.00452 -16.63394 -16.03522 -15.67816 -15.65182 -15.35124 -15.26372 -15.06785 -14.91364 -14.77107 -14.48241 -14.11871 -14.04764 -13.85333 -13.52347 -13.31142 -13.09628 -13.00225 -12.73634 -12.72663 -12.60753 -12.36735 -12.29138 -12.19503 -11.92774 -11.65064 -11.48386 -11.45344 -11.21340 -10.95436 -10.57031 -10.10637 -10.02843 -9.79999 -9.26924 -8.71691 -7.92118 -5.37522 -0.80750 -0.16185 0.78422 1.35502 1.43223 1.47057 1.81907 2.15478 2.31223 2.46529 3.18176 3.24556 3.36178 3.54800 3.75020 3.76762 3.81980 3.89419 3.98948 4.00030 4.05112 4.14505 4.21944 4.44075 4.46597 4.50765 4.58304 4.65035 4.71065 4.73248 4.91576 4.92587 4.97027 4.99223 5.09399 5.11458 5.16500 5.20815 5.22463 5.29329 5.36404 5.44512 5.48120 5.52250 5.57419 5.60111 5.78883 5.86121 6.33227 6.67837 7.08767 7.11017 7.42974 7.82937 8.31679 9.12336 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010897 B = 0.003889 C = 0.003111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2568.797019 B = 7198.271731 C = 8999.049415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.084 4.084 3 H 0.083 0.917 4 C -0.116 4.116 5 C 0.136 3.864 6 N -0.610 5.610 7 C -0.267 4.267 8 H 0.069 0.931 9 C -0.050 4.050 10 N -0.930 5.930 11 Si 0.960 3.040 12 H -0.288 1.288 13 H -0.294 1.294 14 H -0.262 1.262 15 C 0.181 3.819 16 C 0.144 3.856 17 H 0.042 0.958 18 N -0.705 5.705 19 C 0.540 3.460 20 O -0.556 6.556 21 C -0.152 4.152 22 C -0.046 4.046 23 C -0.127 4.127 24 C -0.055 4.055 25 C -0.130 4.130 26 C -0.048 4.048 27 C -0.176 4.176 28 C 0.112 3.888 29 N -0.506 5.506 30 C 0.128 3.872 31 H 0.081 0.919 32 H 0.062 0.938 33 H 0.038 0.962 34 H 0.047 0.953 35 H 0.099 0.901 36 H 0.024 0.976 37 H 0.056 0.944 38 H 0.246 0.754 39 H -0.001 1.001 40 H 0.038 0.962 41 H 0.408 0.592 42 H 0.157 0.843 43 H 0.179 0.821 44 H 0.181 0.819 45 H 0.188 0.812 46 H 0.176 0.824 47 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.534 11.614 -11.737 25.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.103 4.103 3 H 0.101 0.899 4 C -0.155 4.155 5 C 0.011 3.989 6 N -0.333 5.333 7 C -0.397 4.397 8 H 0.086 0.914 9 C -0.245 4.245 10 N -0.576 5.576 11 Si 0.788 3.212 12 H -0.214 1.214 13 H -0.221 1.221 14 H -0.187 1.187 15 C 0.054 3.946 16 C 0.038 3.962 17 H 0.060 0.940 18 N -0.358 5.358 19 C 0.328 3.672 20 O -0.434 6.434 21 C -0.156 4.156 22 C -0.066 4.066 23 C -0.144 4.144 24 C -0.074 4.074 25 C -0.133 4.133 26 C -0.073 4.073 27 C -0.196 4.196 28 C -0.059 4.059 29 N -0.214 5.214 30 C 0.005 3.995 31 H 0.100 0.900 32 H 0.081 0.919 33 H 0.057 0.943 34 H 0.066 0.934 35 H 0.118 0.882 36 H 0.042 0.958 37 H 0.074 0.926 38 H 0.054 0.946 39 H 0.017 0.983 40 H 0.056 0.944 41 H 0.246 0.754 42 H 0.174 0.826 43 H 0.197 0.803 44 H 0.198 0.802 45 H 0.205 0.795 46 H 0.193 0.807 47 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -18.860 10.431 -11.016 24.204 hybrid contribution 0.942 -0.764 -0.796 1.451 sum -17.917 9.667 -11.813 23.538 Atomic orbital electron populations 1.21764 0.92973 1.01483 1.02917 1.21273 0.96943 0.99446 0.92639 0.89897 1.21979 0.95727 1.00128 0.97685 1.21180 0.93575 0.96277 0.87850 1.44236 1.48166 1.39852 1.01084 1.19478 1.09706 1.04132 1.06371 0.91357 1.25777 0.98669 1.00279 0.99801 1.70165 1.38401 1.30918 1.18127 0.85444 0.78021 0.80225 0.77499 1.21442 1.22051 1.18693 1.20757 0.89881 0.94809 0.89171 1.21444 0.94678 0.95617 0.84505 0.93988 1.45758 1.66029 1.14625 1.09404 1.18608 0.78251 0.86494 0.83871 1.90840 1.49795 1.18023 1.84694 1.19994 1.07121 0.96017 0.92434 1.21832 0.92539 0.91039 1.01236 1.21322 0.99350 1.02409 0.91357 1.21715 0.94592 0.91074 0.99987 1.19221 1.02654 0.97069 0.94320 1.22015 0.94325 0.93973 0.97019 1.22278 1.00341 0.96805 1.00144 1.23581 0.93087 1.00947 0.88326 1.68263 1.15715 1.08577 1.28869 1.19033 0.96732 0.90293 0.93446 0.89967 0.91860 0.94297 0.93450 0.88226 0.95822 0.92561 0.94555 0.98287 0.94352 0.75423 0.82561 0.80337 0.80222 0.79476 0.80685 0.81996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.26 9.02 71.98 0.65 -2.61 16 2 C -0.08 -2.66 2.27 -10.77 -0.02 -2.69 16 3 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 4 C -0.12 -3.86 5.36 30.67 0.16 -3.69 16 5 C 0.14 5.78 6.51 86.36 0.56 6.34 16 6 N -0.61 -33.34 2.99 -699.11 -2.09 -35.43 16 7 C -0.27 -16.13 9.59 84.03 0.81 -15.33 16 8 H 0.07 3.98 7.89 -2.91 -0.02 3.96 16 9 C -0.05 -3.08 4.91 84.86 0.42 -2.67 16 10 N -0.93 -61.03 11.19 21.65 0.24 -60.79 16 11 Si 0.96 50.24 29.59 68.60 2.03 52.27 16 12 H -0.29 -15.16 7.11 99.48 0.71 -14.46 16 13 H -0.29 -15.42 7.11 99.48 0.71 -14.71 16 14 H -0.26 -12.68 7.11 99.48 0.71 -11.98 16 15 C 0.18 9.78 4.89 86.36 0.42 10.20 16 16 C 0.14 6.14 2.06 45.07 0.09 6.24 16 17 H 0.04 2.13 7.58 -2.39 -0.02 2.12 16 18 N -0.70 -25.70 4.32 -445.41 -1.92 -27.63 16 19 C 0.54 23.12 7.73 86.67 0.67 23.79 16 20 O -0.56 -30.53 14.85 -4.04 -0.06 -30.59 16 21 C -0.15 -5.12 5.91 -19.86 -0.12 -5.24 16 22 C -0.05 -0.98 9.52 22.54 0.21 -0.77 16 23 C -0.13 -1.75 9.93 21.98 0.22 -1.54 16 24 C -0.06 -0.77 9.75 22.37 0.22 -0.56 16 25 C -0.13 -2.95 5.74 -21.29 -0.12 -3.07 16 26 C -0.05 -0.77 9.90 22.52 0.22 -0.55 16 27 C -0.18 -3.26 10.03 22.13 0.22 -3.04 16 28 C 0.11 3.23 11.15 85.02 0.95 4.18 16 29 N -0.51 -19.98 8.44 -187.96 -1.59 -21.57 16 30 C 0.13 4.37 6.61 40.61 0.27 4.64 16 31 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 32 H 0.06 1.36 7.35 -2.39 -0.02 1.34 16 33 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 34 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 35 H 0.10 2.50 8.14 -2.38 -0.02 2.48 16 36 H 0.02 0.98 8.14 -2.39 -0.02 0.96 16 37 H 0.06 2.33 7.94 -2.39 -0.02 2.32 16 38 H 0.25 15.79 8.31 -92.71 -0.77 15.02 16 39 H 0.00 -0.05 8.14 -2.39 -0.02 -0.07 16 40 H 0.04 2.51 6.03 -2.39 -0.01 2.50 16 41 H 0.41 10.94 6.33 -92.71 -0.59 10.36 16 42 H 0.16 2.39 6.37 -2.92 -0.02 2.37 16 43 H 0.18 0.88 8.06 -2.91 -0.02 0.86 16 44 H 0.18 0.80 8.06 -2.91 -0.02 0.77 16 45 H 0.19 1.10 8.06 -2.91 -0.02 1.08 16 46 H 0.18 1.73 8.06 -2.91 -0.02 1.71 16 47 H 0.16 4.07 8.06 -2.91 -0.02 4.05 16 Total: -1.00 -95.60 378.65 2.84 -92.76 By element: Atomic # 1 Polarization: 16.91 SS G_CDS: 0.40 Total: 17.31 kcal Atomic # 6 Polarization: 7.83 SS G_CDS: 5.83 Total: 13.66 kcal Atomic # 7 Polarization: -140.05 SS G_CDS: -5.36 Total: -145.41 kcal Atomic # 8 Polarization: -30.53 SS G_CDS: -0.06 Total: -30.59 kcal Atomic # 14 Polarization: 50.24 SS G_CDS: 2.03 Total: 52.27 kcal Total: -95.60 2.84 -92.76 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000967268171.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.547 kcal (2) G-P(sol) polarization free energy of solvation -95.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.763 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds