Wall clock time and date at job start Tue Mar 31 2020 22:27:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.44890 * 2 1 4 4 C 1.53042 * 109.45916 * 240.03928 * 2 1 3 5 5 C 1.53194 * 109.30873 * 178.61685 * 4 2 1 6 6 N 1.46920 * 108.77918 * 54.63176 * 5 4 2 7 7 C 1.36941 * 120.63082 * 126.41133 * 6 5 4 8 8 H 1.07994 * 120.00005 * 331.82548 * 7 6 5 9 9 C 1.38814 * 119.99804 * 151.82178 * 7 6 5 10 10 N 1.31612 * 120.00059 * 343.07603 * 9 7 6 11 11 Si 1.86805 * 119.99699 * 163.07725 * 9 7 6 12 12 H 1.48503 * 109.47236 * 59.99871 * 11 9 7 13 13 H 1.48504 * 109.47030 * 180.02562 * 11 9 7 14 14 H 1.48503 * 109.47235 * 299.99896 * 11 9 7 15 15 C 1.46921 * 118.74094 * 306.39277 * 6 5 4 16 16 C 1.53041 * 109.46072 * 119.96841 * 2 1 3 17 17 H 1.08999 * 109.49714 * 301.34025 * 16 2 1 18 18 N 1.46498 * 109.49753 * 61.43546 * 16 2 1 19 19 C 1.34776 * 120.00221 * 205.00443 * 18 16 2 20 20 O 1.21600 * 119.99763 * 359.97438 * 19 18 16 21 21 C 1.47436 * 120.00194 * 180.02562 * 19 18 16 22 22 C 1.38746 * 120.33178 * 359.97438 * 21 19 18 23 23 C 1.38860 * 120.72396 * 179.97438 * 22 21 19 24 24 C 1.36351 * 121.06240 * 0.02562 * 23 22 21 25 25 C 1.40443 * 120.08121 * 0.02562 * 24 23 22 26 26 C 1.40803 * 121.26771 * 179.97438 * 25 24 23 27 27 C 1.36635 * 118.15395 * 179.97438 * 26 25 24 28 28 C 1.39225 * 119.91188 * 0.02562 * 27 26 25 29 29 N 1.31231 * 121.69263 * 0.02562 * 28 27 26 30 30 C 1.33351 * 121.35237 * 359.65953 * 29 28 27 31 31 H 1.09000 * 109.47231 * 300.03108 * 1 2 3 32 32 H 1.09006 * 109.46894 * 60.03099 * 1 2 3 33 33 H 1.09002 * 109.47041 * 180.02562 * 1 2 3 34 34 H 1.09002 * 109.49757 * 298.55974 * 4 2 1 35 35 H 1.08997 * 109.49993 * 58.66697 * 4 2 1 36 36 H 1.09008 * 109.58459 * 174.42331 * 5 4 2 37 37 H 1.09006 * 109.58455 * 294.69969 * 5 4 2 38 38 H 0.97005 * 120.00165 * 179.97438 * 10 9 7 39 39 H 1.09004 * 109.58503 * 293.82125 * 15 6 5 40 40 H 1.08998 * 109.59077 * 173.39362 * 15 6 5 41 41 H 0.97001 * 119.99915 * 24.99489 * 18 16 2 42 42 H 1.07998 * 119.64006 * 359.97438 * 22 21 19 43 43 H 1.08000 * 119.47608 * 180.02562 * 23 22 21 44 44 H 1.07997 * 119.96507 * 179.97438 * 24 23 22 45 45 H 1.07997 * 120.92779 * 0.02562 * 26 25 24 46 46 H 1.08004 * 120.04621 * 180.02562 * 27 26 25 47 47 H 1.08001 * 119.15702 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8929 1.0278 0.0000 4 6 2.0398 -0.7206 -1.2502 5 6 3.5713 -0.6885 -1.2642 6 7 4.0678 -1.2488 -0.0001 7 6 4.9764 -2.2733 -0.0001 8 1 5.0044 -2.9702 -0.8247 9 6 5.8614 -2.4161 1.0597 10 7 6.0659 -1.4125 1.8862 11 14 6.7623 -4.0329 1.3128 12 1 7.5862 -4.3334 0.1143 13 1 7.6416 -3.9283 2.5050 14 1 5.7750 -5.1225 1.5206 15 6 3.5713 -0.6886 1.2642 16 6 2.0398 -0.7208 1.2501 17 1 1.6572 -0.2208 2.1398 18 7 1.5802 -2.1117 1.2342 19 6 1.4515 -2.7922 2.3904 20 8 1.7175 -2.2518 3.4467 21 6 0.9894 -4.1922 2.3743 22 6 0.6846 -4.8157 1.1729 23 6 0.2492 -6.1341 1.1483 24 6 0.1090 -6.8503 2.3000 25 6 0.4057 -6.2575 3.5382 26 6 0.2693 -6.9737 4.7427 27 6 0.5759 -6.3348 5.9109 28 6 1.0087 -5.0118 5.8858 29 7 1.1332 -4.3484 4.7603 30 6 0.8560 -4.9161 3.5860 31 1 -0.3634 0.5143 0.8897 32 1 -0.3633 0.5134 -0.8903 33 1 -0.3633 -1.0277 0.0005 34 1 1.6978 -1.7556 -1.2384 35 1 1.6572 -0.2205 -2.1399 36 1 3.9417 -1.2844 -2.0985 37 1 3.9142 0.3409 -1.3698 38 1 6.6841 -1.5124 2.6270 39 1 3.9142 0.3409 1.3674 40 1 3.9416 -1.2846 2.0983 41 1 1.3682 -2.5429 0.3915 42 1 0.7870 -4.2698 0.2468 43 1 0.0179 -6.5997 0.2017 44 1 -0.2313 -7.8745 2.2603 45 1 -0.0675 -7.9998 4.7433 46 1 0.4826 -6.8554 6.8526 47 1 1.2482 -4.5187 6.8163 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000967268172.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:27:00 Heat of formation + Delta-G solvation = 49.561813 kcal Electronic energy + Delta-G solvation = -30396.968641 eV Core-core repulsion = 26545.350031 eV Total energy + Delta-G solvation = -3851.618610 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -40.88220 -39.31539 -37.46724 -36.75957 -34.05606 -33.35779 -32.71448 -31.00324 -30.53517 -30.30874 -28.78952 -27.23010 -24.64381 -24.04874 -23.46885 -23.22341 -21.96535 -21.02948 -20.20627 -18.71925 -18.15995 -17.67242 -16.79757 -16.59219 -15.93913 -15.09853 -14.88785 -14.68553 -14.50385 -14.13692 -13.96745 -13.78549 -13.73412 -13.56047 -13.25221 -13.05580 -12.95321 -12.76812 -12.50535 -12.10375 -11.86635 -11.72436 -11.53855 -11.41693 -11.26745 -11.01577 -10.85902 -10.67099 -10.48271 -10.43361 -10.18914 -9.87019 -9.65988 -9.52943 -9.41970 -8.83809 -8.81177 -8.38715 -8.32244 -8.11499 -6.57744 -5.70404 -3.13504 0.20714 0.81947 1.81845 2.82058 3.41895 3.49026 3.49675 3.64590 3.80217 4.30866 4.36561 4.55355 4.55932 4.69592 4.80455 4.84531 5.04041 5.11343 5.23017 5.26442 5.30249 5.40038 5.46055 5.49422 5.61393 5.68678 5.86187 5.90480 5.92812 5.97899 6.00658 6.06514 6.18239 6.19231 6.28927 6.35853 6.42222 6.45288 6.50229 6.62192 6.73360 6.77984 6.79933 6.94406 7.09290 7.48795 7.75845 7.87450 8.09082 8.26933 8.53757 9.00065 9.28196 9.92590 10.48270 11.37332 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.009892 B = 0.004861 C = 0.004002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2829.815906 B = 5758.418258 C = 6995.253258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.094 4.094 3 H 0.077 0.923 4 C -0.128 4.128 5 C 0.143 3.857 6 N -0.586 5.586 7 C -0.254 4.254 8 H 0.062 0.938 9 C 0.009 3.991 10 N -0.896 5.896 11 Si 0.895 3.105 12 H -0.283 1.283 13 H -0.290 1.290 14 H -0.285 1.285 15 C 0.161 3.839 16 C 0.128 3.872 17 H 0.076 0.924 18 N -0.698 5.698 19 C 0.550 3.450 20 O -0.504 6.504 21 C -0.091 4.091 22 C -0.067 4.067 23 C -0.121 4.121 24 C -0.083 4.083 25 C -0.110 4.110 26 C -0.063 4.063 27 C -0.176 4.176 28 C 0.126 3.874 29 N -0.429 5.429 30 C 0.160 3.840 31 H 0.050 0.950 32 H 0.049 0.951 33 H 0.050 0.950 34 H 0.052 0.948 35 H 0.053 0.947 36 H 0.052 0.948 37 H 0.017 0.983 38 H 0.254 0.746 39 H 0.024 0.976 40 H 0.097 0.903 41 H 0.390 0.610 42 H 0.134 0.866 43 H 0.132 0.868 44 H 0.131 0.869 45 H 0.137 0.863 46 H 0.135 0.865 47 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.117 -8.806 0.135 18.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.113 4.113 3 H 0.095 0.905 4 C -0.168 4.168 5 C 0.016 3.984 6 N -0.309 5.309 7 C -0.384 4.384 8 H 0.080 0.920 9 C -0.190 4.190 10 N -0.540 5.540 11 Si 0.725 3.275 12 H -0.210 1.210 13 H -0.216 1.216 14 H -0.212 1.212 15 C 0.034 3.966 16 C 0.023 3.977 17 H 0.094 0.906 18 N -0.350 5.350 19 C 0.335 3.665 20 O -0.379 6.379 21 C -0.095 4.095 22 C -0.088 4.088 23 C -0.139 4.139 24 C -0.102 4.102 25 C -0.113 4.113 26 C -0.089 4.089 27 C -0.196 4.196 28 C -0.047 4.047 29 N -0.135 5.135 30 C 0.037 3.963 31 H 0.069 0.931 32 H 0.068 0.932 33 H 0.069 0.931 34 H 0.071 0.929 35 H 0.072 0.928 36 H 0.071 0.929 37 H 0.035 0.965 38 H 0.064 0.936 39 H 0.042 0.958 40 H 0.115 0.885 41 H 0.226 0.774 42 H 0.152 0.848 43 H 0.150 0.850 44 H 0.149 0.851 45 H 0.155 0.845 46 H 0.153 0.847 47 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -15.483 -7.459 0.943 17.212 hybrid contribution 0.264 -2.060 -0.244 2.092 sum -15.219 -9.520 0.698 17.965 Atomic orbital electron populations 1.21845 0.96054 1.01305 1.00904 1.21315 0.94548 0.99889 0.95557 0.90455 1.22080 0.99293 0.99288 0.96109 1.20920 0.90667 0.96511 0.90299 1.43955 1.48247 1.39550 0.99139 1.19000 1.09783 1.03033 1.06581 0.92029 1.24986 0.97152 0.97020 0.99867 1.69977 1.37184 1.28914 1.17882 0.86485 0.79384 0.84326 0.77268 1.20962 1.21635 1.21200 1.21202 0.86788 0.97678 0.90942 1.21754 0.98798 0.80386 0.96792 0.90608 1.45747 1.67413 1.13999 1.07830 1.17742 0.79070 0.85091 0.84590 1.90824 1.48319 1.68619 1.30158 1.20143 1.01985 0.95452 0.91905 1.21457 0.95200 0.94985 0.97174 1.20820 1.00095 0.94215 0.98738 1.21077 0.98140 0.99663 0.91280 1.18827 1.02593 0.94919 0.94927 1.21405 0.96515 0.99553 0.91451 1.21936 1.01687 0.96808 0.99205 1.23180 0.93283 0.91287 0.96965 1.68357 1.11733 1.36196 0.97216 1.18663 0.95735 0.89921 0.91994 0.93091 0.93221 0.93116 0.92892 0.92827 0.92913 0.96487 0.93564 0.95786 0.88481 0.77410 0.84841 0.84971 0.85133 0.84513 0.84676 0.82445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.89 9.05 37.16 0.34 -1.56 16 2 C -0.09 -1.50 2.48 -90.58 -0.22 -1.73 16 3 H 0.08 1.25 8.14 -51.93 -0.42 0.82 16 4 C -0.13 -2.03 5.20 -26.61 -0.14 -2.17 16 5 C 0.14 2.86 6.51 -3.71 -0.02 2.83 16 6 N -0.59 -14.39 2.91 -172.32 -0.50 -14.89 16 7 C -0.25 -6.98 9.58 -15.06 -0.14 -7.13 16 8 H 0.06 1.65 7.88 -52.49 -0.41 1.24 16 9 C 0.01 0.26 4.92 -17.43 -0.09 0.18 16 10 N -0.90 -27.15 11.20 55.49 0.62 -26.53 16 11 Si 0.90 22.83 29.59 -169.99 -5.03 17.80 16 12 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 13 H -0.29 -7.52 7.11 56.52 0.40 -7.12 16 14 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 15 C 0.16 3.95 4.90 -3.72 -0.02 3.93 16 16 C 0.13 2.53 2.24 -67.81 -0.15 2.38 16 17 H 0.08 1.56 7.58 -51.93 -0.39 1.17 16 18 N -0.70 -13.09 4.20 -54.76 -0.23 -13.32 16 19 C 0.55 11.48 7.73 -12.51 -0.10 11.38 16 20 O -0.50 -12.37 14.85 5.28 0.08 -12.29 16 21 C -0.09 -1.64 5.91 -104.61 -0.62 -2.26 16 22 C -0.07 -0.94 9.52 -39.16 -0.37 -1.32 16 23 C -0.12 -1.36 9.93 -40.03 -0.40 -1.76 16 24 C -0.08 -0.92 9.75 -39.43 -0.38 -1.30 16 25 C -0.11 -1.52 5.74 -106.82 -0.61 -2.14 16 26 C -0.06 -0.69 9.90 -39.19 -0.39 -1.08 16 27 C -0.18 -1.91 10.03 -39.79 -0.40 -2.31 16 28 C 0.13 1.77 11.15 -17.44 -0.19 1.58 16 29 N -0.43 -8.05 8.44 -10.77 -0.09 -8.14 16 30 C 0.16 2.84 6.61 -84.58 -0.56 2.28 16 31 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.05 0.65 7.54 -51.93 -0.39 0.26 16 34 H 0.05 0.82 6.40 -51.93 -0.33 0.48 16 35 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 36 H 0.05 1.04 7.93 -51.92 -0.41 0.63 16 37 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 38 H 0.25 7.58 8.31 -40.82 -0.34 7.24 16 39 H 0.02 0.63 8.14 -51.93 -0.42 0.20 16 40 H 0.10 2.84 6.06 -51.93 -0.31 2.53 16 41 H 0.39 6.45 4.66 -40.82 -0.19 6.26 16 42 H 0.13 1.61 6.37 -52.49 -0.33 1.28 16 43 H 0.13 1.05 8.06 -52.49 -0.42 0.62 16 44 H 0.13 0.99 8.06 -52.49 -0.42 0.56 16 45 H 0.14 0.99 8.06 -52.49 -0.42 0.57 16 46 H 0.14 0.97 8.06 -52.48 -0.42 0.55 16 47 H 0.16 1.79 8.06 -52.49 -0.42 1.36 16 LS Contribution 375.52 15.07 5.66 5.66 Total: -1.00 -35.59 375.52 -10.54 -46.12 By element: Atomic # 1 Polarization: 12.34 SS G_CDS: -6.57 Total: 5.77 kcal Atomic # 6 Polarization: 4.29 SS G_CDS: -4.47 Total: -0.18 kcal Atomic # 7 Polarization: -62.68 SS G_CDS: -0.20 Total: -62.88 kcal Atomic # 8 Polarization: -12.37 SS G_CDS: 0.08 Total: -12.29 kcal Atomic # 14 Polarization: 22.83 SS G_CDS: -5.03 Total: 17.80 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -35.59 -10.54 -46.12 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000967268172.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.686 kcal (2) G-P(sol) polarization free energy of solvation -35.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.124 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds