Wall clock time and date at job start Tue Mar 31 2020 22:27:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09003 * 109.45885 * 2 1 4 4 C 1.53355 * 109.41743 * 240.10526 * 2 1 3 5 5 C 1.53185 * 109.14921 * 178.67349 * 4 2 1 6 6 N 1.46929 * 108.89559 * 54.57565 * 5 4 2 7 7 C 1.36936 * 120.63050 * 126.33769 * 6 5 4 8 8 H 1.08002 * 120.00259 * 331.73357 * 7 6 5 9 9 C 1.38815 * 119.99820 * 151.73491 * 7 6 5 10 10 N 1.31618 * 119.99883 * 343.41344 * 9 7 6 11 11 Si 1.86800 * 119.99805 * 163.42035 * 9 7 6 12 12 H 1.48505 * 109.47101 * 89.99921 * 11 9 7 13 13 H 1.48502 * 109.46976 * 209.99691 * 11 9 7 14 14 H 1.48493 * 109.47092 * 329.99530 * 11 9 7 15 15 C 1.46921 * 118.73794 * 306.32225 * 6 5 4 16 16 C 1.53036 * 109.46111 * 119.97877 * 2 1 3 17 17 H 1.09007 * 109.49485 * 301.33224 * 16 2 1 18 18 N 1.46496 * 109.52812 * 61.41239 * 16 2 1 19 19 C 1.34777 * 120.00201 * 204.85343 * 18 16 2 20 20 O 1.21542 * 119.99971 * 0.02562 * 19 18 16 21 21 C 1.47906 * 119.99623 * 180.02562 * 19 18 16 22 22 C 1.38891 * 121.11496 * 5.81771 * 21 19 18 23 23 C 1.39266 * 119.57641 * 180.02562 * 22 21 19 24 24 N 1.30994 * 121.88483 * 359.97438 * 23 22 21 25 25 C 1.33526 * 121.83168 * 0.02562 * 24 23 22 26 26 C 1.40716 * 120.97306 * 179.97438 * 25 24 23 27 27 C 1.36061 * 119.73694 * 180.02562 * 26 25 24 28 28 C 1.39351 * 121.05827 * 0.02562 * 27 26 25 29 29 C 1.36244 * 120.84083 * 0.02562 * 28 27 26 30 30 C 1.40105 * 119.64148 * 359.72379 * 29 28 27 31 31 H 1.09005 * 109.46411 * 300.02565 * 1 2 3 32 32 H 1.08997 * 109.47320 * 60.02176 * 1 2 3 33 33 H 1.08993 * 109.47034 * 180.02562 * 1 2 3 34 34 H 1.09002 * 109.68409 * 58.70279 * 4 2 1 35 35 H 1.09003 * 109.47159 * 298.51295 * 4 2 1 36 36 H 1.09000 * 109.58729 * 294.71693 * 5 4 2 37 37 H 1.09002 * 109.58388 * 174.43324 * 5 4 2 38 38 H 0.96996 * 119.99896 * 179.97438 * 10 9 7 39 39 H 1.08996 * 109.58661 * 173.39180 * 15 6 5 40 40 H 1.09001 * 109.58407 * 293.81857 * 15 6 5 41 41 H 0.97001 * 119.99304 * 24.85729 * 18 16 2 42 42 H 1.07999 * 120.20879 * 359.97438 * 22 21 19 43 43 H 1.08005 * 119.05597 * 180.02562 * 23 22 21 44 44 H 1.07992 * 120.13285 * 0.03336 * 26 25 24 45 45 H 1.08001 * 119.47137 * 180.02562 * 27 26 25 46 46 H 1.08002 * 119.57975 * 180.02562 * 28 27 26 47 47 H 1.07996 * 120.18239 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8932 1.0278 0.0000 4 6 2.0399 -0.7209 -1.2539 5 6 3.5714 -0.6883 -1.2645 6 7 4.0680 -1.2488 -0.0003 7 6 4.9765 -2.2733 -0.0005 8 1 5.0034 -2.9711 -0.8245 9 6 5.8628 -2.4152 1.0583 10 7 6.0633 -1.4129 1.8875 11 14 6.7712 -4.0285 1.3062 12 1 8.0551 -3.9934 0.5606 13 1 7.0440 -4.2259 2.7525 14 1 5.9368 -5.1488 0.8025 15 6 3.5715 -0.6888 1.2640 16 6 2.0399 -0.7210 1.2499 17 1 1.6573 -0.2210 2.1398 18 7 1.5802 -2.1119 1.2347 19 6 1.4548 -2.7929 2.3910 20 8 1.7227 -2.2529 3.4464 21 6 0.9911 -4.1973 2.3754 22 6 0.7932 -4.8746 1.1791 23 6 0.3554 -6.1965 1.2019 24 7 0.1222 -6.8289 2.3251 25 6 0.2906 -6.2413 3.5122 26 6 0.0341 -6.9376 4.7078 27 6 0.2137 -6.3142 5.9038 28 6 0.6486 -4.9918 5.9670 29 6 0.9059 -4.2860 4.8304 30 6 0.7368 -4.8981 3.5815 31 1 -0.3632 0.5143 0.8898 32 1 -0.3634 0.5135 -0.8901 33 1 -0.3633 -1.0276 0.0005 34 1 1.6591 -0.2215 -2.1448 35 1 1.6980 -1.7558 -1.2423 36 1 3.9143 0.3412 -1.3674 37 1 3.9437 -1.2826 -2.0989 38 1 6.6823 -1.5122 2.6276 39 1 3.9418 -1.2848 2.0980 40 1 3.9144 0.3407 1.3672 41 1 1.3660 -2.5426 0.3924 42 1 0.9769 -4.3790 0.2373 43 1 0.2047 -6.7153 0.2667 44 1 -0.3038 -7.9628 4.6763 45 1 0.0159 -6.8528 6.8188 46 1 0.7836 -4.5204 6.9293 47 1 1.2429 -3.2618 4.8918 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000967278142.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:27:15 Heat of formation + Delta-G solvation = 45.725887 kcal Electronic energy + Delta-G solvation = -30382.158897 eV Core-core repulsion = 26530.373949 eV Total energy + Delta-G solvation = -3851.784948 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -41.00944 -39.47593 -37.61122 -37.04957 -34.23848 -33.41990 -32.88392 -31.08850 -30.51566 -30.13406 -29.02164 -27.38288 -25.06752 -24.06727 -23.52948 -22.89004 -22.02993 -21.17357 -20.63571 -18.84764 -18.18508 -17.54066 -17.22717 -16.72032 -15.51351 -15.34289 -15.04903 -14.75658 -14.67805 -14.40091 -13.99365 -13.93288 -13.84222 -13.72167 -13.37748 -13.23983 -13.02404 -12.96016 -12.61426 -12.00458 -11.76678 -11.65793 -11.58710 -11.49685 -11.31808 -11.16233 -10.95718 -10.74121 -10.58181 -10.37934 -10.27270 -10.10121 -9.96563 -9.72542 -9.56587 -9.06743 -8.78347 -8.54766 -8.49504 -8.18254 -6.68852 -5.80856 -3.24220 0.17538 0.81560 1.81300 2.86827 3.35206 3.35626 3.44049 3.44584 3.49971 4.19169 4.25244 4.47190 4.65133 4.73846 4.77741 4.88096 5.09866 5.12932 5.17260 5.23482 5.27776 5.35109 5.38091 5.49851 5.56134 5.66984 5.80459 5.82478 5.85757 5.93781 6.04069 6.08392 6.13168 6.21305 6.29055 6.33147 6.37123 6.44534 6.52404 6.57216 6.63833 6.69772 6.80506 6.88045 6.95610 7.29460 7.61172 7.76588 7.84614 7.91732 8.42735 8.58181 9.17778 9.81713 10.37137 11.27074 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.009980 B = 0.004755 C = 0.003954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2804.819423 B = 5886.708157 C = 7080.054711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.094 4.094 3 H 0.080 0.920 4 C -0.129 4.129 5 C 0.141 3.859 6 N -0.587 5.587 7 C -0.255 4.255 8 H 0.063 0.937 9 C 0.009 3.991 10 N -0.897 5.897 11 Si 0.894 3.106 12 H -0.286 1.286 13 H -0.289 1.289 14 H -0.280 1.280 15 C 0.160 3.840 16 C 0.124 3.876 17 H 0.079 0.921 18 N -0.684 5.684 19 C 0.558 3.442 20 O -0.532 6.532 21 C -0.057 4.057 22 C -0.141 4.141 23 C 0.127 3.873 24 N -0.466 5.466 25 C 0.123 3.877 26 C -0.104 4.104 27 C -0.098 4.098 28 C -0.126 4.126 29 C -0.093 4.093 30 C -0.068 4.068 31 H 0.051 0.949 32 H 0.051 0.949 33 H 0.050 0.950 34 H 0.055 0.945 35 H 0.052 0.948 36 H 0.018 0.982 37 H 0.054 0.946 38 H 0.254 0.746 39 H 0.098 0.902 40 H 0.027 0.973 41 H 0.396 0.604 42 H 0.142 0.858 43 H 0.164 0.836 44 H 0.133 0.867 45 H 0.127 0.873 46 H 0.127 0.873 47 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.825 -4.225 0.093 15.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.113 4.113 3 H 0.098 0.902 4 C -0.168 4.168 5 C 0.015 3.985 6 N -0.310 5.310 7 C -0.385 4.385 8 H 0.081 0.919 9 C -0.190 4.190 10 N -0.540 5.540 11 Si 0.724 3.276 12 H -0.213 1.213 13 H -0.215 1.215 14 H -0.206 1.206 15 C 0.033 3.967 16 C 0.019 3.981 17 H 0.097 0.903 18 N -0.333 5.333 19 C 0.344 3.656 20 O -0.411 6.411 21 C -0.068 4.068 22 C -0.162 4.162 23 C -0.045 4.045 24 N -0.175 5.175 25 C 0.001 3.999 26 C -0.122 4.122 27 C -0.118 4.118 28 C -0.144 4.144 29 C -0.111 4.111 30 C -0.070 4.070 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.069 0.931 34 H 0.074 0.926 35 H 0.071 0.929 36 H 0.036 0.964 37 H 0.072 0.928 38 H 0.065 0.935 39 H 0.116 0.884 40 H 0.045 0.955 41 H 0.232 0.768 42 H 0.160 0.840 43 H 0.181 0.819 44 H 0.151 0.849 45 H 0.145 0.855 46 H 0.145 0.855 47 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -14.777 -4.670 1.055 15.533 hybrid contribution 0.879 -0.263 -0.354 0.983 sum -13.898 -4.932 0.701 14.764 Atomic orbital electron populations 1.21860 0.95944 1.01341 1.01106 1.21379 0.94609 0.99997 0.95344 0.90213 1.22141 0.99300 0.99286 0.96121 1.20937 0.90638 0.96627 0.90304 1.43974 1.48267 1.39611 0.99109 1.19051 1.09779 1.02987 1.06672 0.91880 1.25003 0.97105 0.97118 0.99821 1.69982 1.37176 1.29011 1.17868 0.86431 0.79843 0.84020 0.77309 1.21310 1.21514 1.20565 1.21212 0.86403 0.97956 0.91099 1.21898 0.99183 0.79828 0.97200 0.90293 1.45751 1.65522 1.14205 1.07859 1.17874 0.78264 0.84893 0.84594 1.90561 1.51020 1.69294 1.30188 1.20529 0.97982 0.94919 0.93359 1.22432 0.99010 0.96379 0.98365 1.22863 0.93695 0.91333 0.96567 1.67773 1.14435 1.37381 0.97869 1.18874 0.98082 0.90500 0.92396 1.20722 1.01231 1.00101 0.90167 1.20957 0.98053 0.95109 0.97696 1.21080 0.99821 0.94463 0.99030 1.22157 0.95469 1.03061 0.90432 1.18712 1.00203 0.94178 0.93946 0.93031 0.93019 0.93132 0.92587 0.92889 0.96371 0.92779 0.93546 0.88421 0.95479 0.76819 0.84035 0.81890 0.84864 0.85496 0.85503 0.81160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.74 9.05 37.16 0.34 -1.40 16 2 C -0.09 -1.38 2.48 -90.41 -0.22 -1.60 16 3 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 4 C -0.13 -1.90 5.23 -26.45 -0.14 -2.03 16 5 C 0.14 2.68 6.50 -3.71 -0.02 2.66 16 6 N -0.59 -13.66 2.91 -172.32 -0.50 -14.16 16 7 C -0.26 -6.73 9.58 -15.06 -0.14 -6.87 16 8 H 0.06 1.63 7.88 -52.49 -0.41 1.22 16 9 C 0.01 0.25 4.92 -17.43 -0.09 0.16 16 10 N -0.90 -26.10 11.18 55.49 0.62 -25.48 16 11 Si 0.89 22.10 29.59 -169.99 -5.03 17.07 16 12 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 13 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 14 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 15 C 0.16 3.68 4.90 -3.71 -0.02 3.66 16 16 C 0.12 2.23 2.24 -67.81 -0.15 2.08 16 17 H 0.08 1.45 7.58 -51.93 -0.39 1.06 16 18 N -0.68 -11.55 4.21 -54.61 -0.23 -11.78 16 19 C 0.56 10.31 7.72 -12.30 -0.09 10.21 16 20 O -0.53 -11.17 13.19 5.33 0.07 -11.10 16 21 C -0.06 -0.94 5.94 -104.34 -0.62 -1.56 16 22 C -0.14 -1.93 9.60 -38.96 -0.37 -2.30 16 23 C 0.13 1.63 11.14 -17.53 -0.20 1.43 16 24 N -0.47 -6.92 10.30 -11.00 -0.11 -7.03 16 25 C 0.12 1.91 6.61 -84.87 -0.56 1.35 16 26 C -0.10 -1.35 9.99 -39.43 -0.39 -1.74 16 27 C -0.10 -1.14 9.94 -39.95 -0.40 -1.54 16 28 C -0.13 -1.64 9.96 -39.88 -0.40 -2.04 16 29 C -0.09 -1.50 9.25 -39.60 -0.37 -1.87 16 30 C -0.07 -1.13 5.76 -106.52 -0.61 -1.75 16 31 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.05 0.59 7.54 -51.93 -0.39 0.20 16 34 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.05 0.75 6.41 -51.93 -0.33 0.42 16 36 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 37 H 0.05 1.01 7.93 -51.93 -0.41 0.60 16 38 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 39 H 0.10 2.67 6.06 -51.93 -0.31 2.36 16 40 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.40 5.91 4.82 -40.82 -0.20 5.71 16 42 H 0.14 1.60 6.55 -52.49 -0.34 1.26 16 43 H 0.16 1.46 8.06 -52.48 -0.42 1.04 16 44 H 0.13 1.46 8.06 -52.49 -0.42 1.03 16 45 H 0.13 1.06 8.06 -52.49 -0.42 0.63 16 46 H 0.13 1.33 8.06 -52.49 -0.42 0.91 16 47 H 0.17 3.01 4.98 -52.49 -0.26 2.75 16 LS Contribution 372.65 15.07 5.62 5.62 Total: -1.00 -31.87 372.65 -10.45 -42.32 By element: Atomic # 1 Polarization: 14.12 SS G_CDS: -6.42 Total: 7.70 kcal Atomic # 6 Polarization: 1.31 SS G_CDS: -4.46 Total: -3.15 kcal Atomic # 7 Polarization: -58.23 SS G_CDS: -0.22 Total: -58.46 kcal Atomic # 8 Polarization: -11.17 SS G_CDS: 0.07 Total: -11.10 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.03 Total: 17.07 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -31.87 -10.45 -42.32 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000967278142.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.051 kcal (2) G-P(sol) polarization free energy of solvation -31.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.325 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds