Wall clock time and date at job start Tue Mar 31 2020 22:27:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09003 * 109.45885 * 2 1 4 4 C 1.53355 * 109.41743 * 240.10526 * 2 1 3 5 5 C 1.53185 * 109.14921 * 178.67349 * 4 2 1 6 6 N 1.46929 * 108.89559 * 54.57565 * 5 4 2 7 7 C 1.36936 * 120.63050 * 126.33769 * 6 5 4 8 8 H 1.08002 * 120.00259 * 331.73357 * 7 6 5 9 9 C 1.38815 * 119.99820 * 151.73491 * 7 6 5 10 10 N 1.31618 * 119.99883 * 343.41344 * 9 7 6 11 11 Si 1.86800 * 119.99805 * 163.42035 * 9 7 6 12 12 H 1.48505 * 109.47101 * 89.99921 * 11 9 7 13 13 H 1.48502 * 109.46976 * 209.99691 * 11 9 7 14 14 H 1.48493 * 109.47092 * 329.99530 * 11 9 7 15 15 C 1.46921 * 118.73794 * 306.32225 * 6 5 4 16 16 C 1.53036 * 109.46111 * 119.97877 * 2 1 3 17 17 H 1.09007 * 109.49485 * 301.33224 * 16 2 1 18 18 N 1.46496 * 109.52812 * 61.41239 * 16 2 1 19 19 C 1.34777 * 120.00201 * 204.85343 * 18 16 2 20 20 O 1.21542 * 119.99971 * 0.02562 * 19 18 16 21 21 C 1.47906 * 119.99623 * 180.02562 * 19 18 16 22 22 C 1.38891 * 121.11496 * 5.81771 * 21 19 18 23 23 C 1.39266 * 119.57641 * 180.02562 * 22 21 19 24 24 N 1.30994 * 121.88483 * 359.97438 * 23 22 21 25 25 C 1.33526 * 121.83168 * 0.02562 * 24 23 22 26 26 C 1.40716 * 120.97306 * 179.97438 * 25 24 23 27 27 C 1.36061 * 119.73694 * 180.02562 * 26 25 24 28 28 C 1.39351 * 121.05827 * 0.02562 * 27 26 25 29 29 C 1.36244 * 120.84083 * 0.02562 * 28 27 26 30 30 C 1.40105 * 119.64148 * 359.72379 * 29 28 27 31 31 H 1.09005 * 109.46411 * 300.02565 * 1 2 3 32 32 H 1.08997 * 109.47320 * 60.02176 * 1 2 3 33 33 H 1.08993 * 109.47034 * 180.02562 * 1 2 3 34 34 H 1.09002 * 109.68409 * 58.70279 * 4 2 1 35 35 H 1.09003 * 109.47159 * 298.51295 * 4 2 1 36 36 H 1.09000 * 109.58729 * 294.71693 * 5 4 2 37 37 H 1.09002 * 109.58388 * 174.43324 * 5 4 2 38 38 H 0.96996 * 119.99896 * 179.97438 * 10 9 7 39 39 H 1.08996 * 109.58661 * 173.39180 * 15 6 5 40 40 H 1.09001 * 109.58407 * 293.81857 * 15 6 5 41 41 H 0.97001 * 119.99304 * 24.85729 * 18 16 2 42 42 H 1.07999 * 120.20879 * 359.97438 * 22 21 19 43 43 H 1.08005 * 119.05597 * 180.02562 * 23 22 21 44 44 H 1.07992 * 120.13285 * 0.03336 * 26 25 24 45 45 H 1.08001 * 119.47137 * 180.02562 * 27 26 25 46 46 H 1.08002 * 119.57975 * 180.02562 * 28 27 26 47 47 H 1.07996 * 120.18239 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8932 1.0278 0.0000 4 6 2.0399 -0.7209 -1.2539 5 6 3.5714 -0.6883 -1.2645 6 7 4.0680 -1.2488 -0.0003 7 6 4.9765 -2.2733 -0.0005 8 1 5.0034 -2.9711 -0.8245 9 6 5.8628 -2.4152 1.0583 10 7 6.0633 -1.4129 1.8875 11 14 6.7712 -4.0285 1.3062 12 1 8.0551 -3.9934 0.5606 13 1 7.0440 -4.2259 2.7525 14 1 5.9368 -5.1488 0.8025 15 6 3.5715 -0.6888 1.2640 16 6 2.0399 -0.7210 1.2499 17 1 1.6573 -0.2210 2.1398 18 7 1.5802 -2.1119 1.2347 19 6 1.4548 -2.7929 2.3910 20 8 1.7227 -2.2529 3.4464 21 6 0.9911 -4.1973 2.3754 22 6 0.7932 -4.8746 1.1791 23 6 0.3554 -6.1965 1.2019 24 7 0.1222 -6.8289 2.3251 25 6 0.2906 -6.2413 3.5122 26 6 0.0341 -6.9376 4.7078 27 6 0.2137 -6.3142 5.9038 28 6 0.6486 -4.9918 5.9670 29 6 0.9059 -4.2860 4.8304 30 6 0.7368 -4.8981 3.5815 31 1 -0.3632 0.5143 0.8898 32 1 -0.3634 0.5135 -0.8901 33 1 -0.3633 -1.0276 0.0005 34 1 1.6591 -0.2215 -2.1448 35 1 1.6980 -1.7558 -1.2423 36 1 3.9143 0.3412 -1.3674 37 1 3.9437 -1.2826 -2.0989 38 1 6.6823 -1.5122 2.6276 39 1 3.9418 -1.2848 2.0980 40 1 3.9144 0.3407 1.3672 41 1 1.3660 -2.5426 0.3924 42 1 0.9769 -4.3790 0.2373 43 1 0.2047 -6.7153 0.2667 44 1 -0.3038 -7.9628 4.6763 45 1 0.0159 -6.8528 6.8188 46 1 0.7836 -4.5204 6.9293 47 1 1.2429 -3.2618 4.8918 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000967278142.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:27:14 Heat of formation + Delta-G solvation = 26.693637 kcal Electronic energy + Delta-G solvation = -30382.984197 eV Core-core repulsion = 26530.373949 eV Total energy + Delta-G solvation = -3852.610248 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -42.16666 -40.84526 -39.08499 -38.08687 -35.97529 -34.71512 -34.20386 -32.84801 -31.58023 -31.35883 -30.41599 -28.93176 -26.38383 -25.67846 -24.58888 -24.17513 -23.38206 -22.76670 -21.90262 -20.36381 -19.32182 -18.69911 -18.68096 -18.20791 -16.95393 -16.80394 -16.55157 -16.13295 -15.88075 -15.69737 -15.56596 -15.27165 -15.08759 -14.85602 -14.81298 -14.57895 -14.39068 -14.10551 -14.03062 -13.56802 -13.15864 -13.02581 -12.80236 -12.76115 -12.63964 -12.62026 -12.49779 -12.33482 -12.27721 -11.96822 -11.57431 -11.54597 -11.38482 -11.26063 -11.07190 -10.57229 -10.33065 -10.04885 -9.82029 -9.29380 -8.65180 -7.88752 -5.32903 -0.94741 -0.23527 0.67983 1.35843 1.39999 1.45662 1.75895 2.04704 2.19224 2.45291 3.08591 3.27291 3.28184 3.50652 3.63122 3.67523 3.69508 3.85519 3.88399 3.98116 4.11654 4.15622 4.22102 4.39509 4.50647 4.53021 4.57582 4.66652 4.71256 4.77124 4.82490 4.87680 4.96201 5.04145 5.06721 5.14300 5.17964 5.24868 5.25910 5.32938 5.45310 5.46819 5.50049 5.54228 5.60216 5.69726 5.71214 5.88158 6.37724 6.53344 6.77713 7.13155 7.20757 7.86777 8.37044 9.16153 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.009980 B = 0.004755 C = 0.003954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2804.819423 B = 5886.708157 C = 7080.054711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.087 4.087 3 H 0.078 0.922 4 C -0.116 4.116 5 C 0.135 3.865 6 N -0.600 5.600 7 C -0.245 4.245 8 H 0.072 0.928 9 C -0.049 4.049 10 N -0.933 5.933 11 Si 0.946 3.054 12 H -0.280 1.280 13 H -0.306 1.306 14 H -0.269 1.269 15 C 0.171 3.829 16 C 0.136 3.864 17 H 0.067 0.933 18 N -0.674 5.674 19 C 0.551 3.449 20 O -0.569 6.569 21 C -0.090 4.090 22 C -0.126 4.126 23 C 0.128 3.872 24 N -0.473 5.473 25 C 0.102 3.898 26 C -0.105 4.105 27 C -0.092 4.092 28 C -0.116 4.116 29 C -0.131 4.131 30 C -0.090 4.090 31 H 0.048 0.952 32 H 0.077 0.923 33 H 0.056 0.944 34 H 0.093 0.907 35 H 0.064 0.936 36 H 0.013 0.987 37 H 0.059 0.941 38 H 0.244 0.756 39 H 0.048 0.952 40 H -0.001 1.001 41 H 0.407 0.593 42 H 0.167 0.833 43 H 0.208 0.792 44 H 0.157 0.843 45 H 0.169 0.831 46 H 0.149 0.851 47 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.355 -6.317 -1.932 18.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.106 4.106 3 H 0.096 0.904 4 C -0.155 4.155 5 C 0.010 3.990 6 N -0.323 5.323 7 C -0.376 4.376 8 H 0.090 0.910 9 C -0.244 4.244 10 N -0.579 5.579 11 Si 0.775 3.225 12 H -0.206 1.206 13 H -0.233 1.233 14 H -0.194 1.194 15 C 0.044 3.956 16 C 0.030 3.970 17 H 0.085 0.915 18 N -0.324 5.324 19 C 0.339 3.661 20 O -0.450 6.450 21 C -0.101 4.101 22 C -0.147 4.147 23 C -0.044 4.044 24 N -0.182 5.182 25 C -0.019 4.019 26 C -0.124 4.124 27 C -0.111 4.111 28 C -0.133 4.133 29 C -0.149 4.149 30 C -0.092 4.092 31 H 0.067 0.933 32 H 0.096 0.904 33 H 0.075 0.925 34 H 0.112 0.888 35 H 0.082 0.918 36 H 0.031 0.969 37 H 0.077 0.923 38 H 0.053 0.947 39 H 0.067 0.933 40 H 0.017 0.983 41 H 0.246 0.754 42 H 0.184 0.816 43 H 0.224 0.776 44 H 0.175 0.825 45 H 0.186 0.814 46 H 0.167 0.833 47 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -17.340 -6.772 -1.029 18.644 hybrid contribution 1.658 0.393 0.264 1.724 sum -15.682 -6.379 -0.765 16.947 Atomic orbital electron populations 1.21774 0.93064 1.02157 1.02341 1.21338 0.96824 0.99233 0.93243 0.90360 1.22029 0.95503 1.00534 0.97435 1.21164 0.93772 0.95957 0.88125 1.44172 1.48028 1.39437 1.00656 1.19414 1.08839 1.03367 1.05970 0.91027 1.25653 0.98826 0.99433 1.00495 1.70149 1.38476 1.30753 1.18557 0.85587 0.79275 0.81521 0.76076 1.20612 1.23345 1.19418 1.20875 0.89884 0.95150 0.89733 1.21569 0.95352 0.81024 0.99025 0.91478 1.45601 1.65023 1.13697 1.08089 1.18340 0.77592 0.85862 0.84325 1.90555 1.52515 1.70386 1.31566 1.20489 1.00625 0.94086 0.94931 1.22772 0.97053 0.96747 0.98124 1.23566 0.92271 0.90970 0.97592 1.67854 1.14571 1.37565 0.98197 1.19220 0.98796 0.90209 0.93719 1.21109 1.00472 1.01052 0.89743 1.21358 0.96471 0.94297 0.98994 1.21420 0.97835 0.95154 0.98928 1.22027 0.98410 1.02592 0.91905 1.18929 1.01036 0.95137 0.94132 0.93257 0.90383 0.92521 0.88837 0.91762 0.96932 0.92296 0.94692 0.93339 0.98332 0.75447 0.81589 0.77574 0.82533 0.81393 0.83300 0.83876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.82 9.05 71.98 0.65 -2.17 16 2 C -0.09 -2.39 2.48 -10.66 -0.03 -2.42 16 3 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 4 C -0.12 -3.03 5.23 30.77 0.16 -2.86 16 5 C 0.13 4.91 6.50 86.36 0.56 5.47 16 6 N -0.60 -28.23 2.91 -699.10 -2.04 -30.26 16 7 C -0.25 -13.03 9.58 84.03 0.81 -12.23 16 8 H 0.07 3.64 7.88 -2.91 -0.02 3.61 16 9 C -0.05 -2.77 4.92 84.86 0.42 -2.35 16 10 N -0.93 -57.36 11.18 21.65 0.24 -57.12 16 11 Si 0.95 46.61 29.59 68.60 2.03 48.64 16 12 H -0.28 -13.32 7.11 99.48 0.71 -12.61 16 13 H -0.31 -15.80 7.11 99.48 0.71 -15.09 16 14 H -0.27 -12.61 7.11 99.48 0.71 -11.91 16 15 C 0.17 8.25 4.90 86.37 0.42 8.68 16 16 C 0.14 4.99 2.24 45.07 0.10 5.09 16 17 H 0.07 2.61 7.58 -2.38 -0.02 2.60 16 18 N -0.67 -22.84 4.21 -444.98 -1.88 -24.72 16 19 C 0.55 21.28 7.72 86.80 0.67 21.95 16 20 O -0.57 -25.94 13.19 -3.85 -0.05 -25.99 16 21 C -0.09 -3.04 5.94 -19.68 -0.12 -3.16 16 22 C -0.13 -3.23 9.60 22.67 0.22 -3.01 16 23 C 0.13 2.91 11.14 85.06 0.95 3.86 16 24 N -0.47 -13.08 10.30 -188.73 -1.94 -15.02 16 25 C 0.10 3.06 6.61 40.35 0.27 3.33 16 26 C -0.11 -2.53 9.99 22.37 0.22 -2.30 16 27 C -0.09 -1.92 9.94 22.03 0.22 -1.70 16 28 C -0.12 -2.97 9.96 22.07 0.22 -2.75 16 29 C -0.13 -4.44 9.25 22.26 0.21 -4.24 16 30 C -0.09 -3.07 5.76 -21.09 -0.12 -3.19 16 31 H 0.05 1.06 8.14 -2.38 -0.02 1.04 16 32 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 33 H 0.06 1.12 7.54 -2.39 -0.02 1.10 16 34 H 0.09 1.85 8.14 -2.39 -0.02 1.84 16 35 H 0.06 1.56 6.41 -2.39 -0.02 1.55 16 36 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 37 H 0.06 2.08 7.93 -2.39 -0.02 2.06 16 38 H 0.24 14.88 8.31 -92.71 -0.77 14.11 16 39 H 0.05 2.84 6.06 -2.39 -0.01 2.83 16 40 H 0.00 -0.07 8.14 -2.39 -0.02 -0.09 16 41 H 0.41 11.47 4.82 -92.71 -0.45 11.02 16 42 H 0.17 3.25 6.55 -2.91 -0.02 3.23 16 43 H 0.21 2.74 8.06 -2.91 -0.02 2.72 16 44 H 0.16 2.94 8.06 -2.91 -0.02 2.91 16 45 H 0.17 2.10 8.06 -2.91 -0.02 2.08 16 46 H 0.15 3.01 8.06 -2.91 -0.02 2.98 16 47 H 0.14 5.61 4.98 -2.91 -0.01 5.60 16 Total: -1.00 -75.75 372.65 2.74 -73.01 By element: Atomic # 1 Polarization: 24.92 SS G_CDS: 0.55 Total: 25.47 kcal Atomic # 6 Polarization: 0.17 SS G_CDS: 5.83 Total: 5.99 kcal Atomic # 7 Polarization: -121.50 SS G_CDS: -5.61 Total: -127.11 kcal Atomic # 8 Polarization: -25.94 SS G_CDS: -0.05 Total: -25.99 kcal Atomic # 14 Polarization: 46.61 SS G_CDS: 2.03 Total: 48.64 kcal Total: -75.75 2.74 -73.01 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000967278142.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.700 kcal (2) G-P(sol) polarization free energy of solvation -75.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.007 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds