Wall clock time and date at job start Tue Mar 31 2020 22:26:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.45285 * 2 1 4 4 C 1.53052 * 109.45368 * 240.03940 * 2 1 3 5 5 C 1.53196 * 109.30671 * 178.61735 * 4 2 1 6 6 N 1.46920 * 108.77875 * 54.63638 * 5 4 2 7 7 C 1.36930 * 120.63487 * 126.38981 * 6 5 4 8 8 H 1.08007 * 119.99870 * 331.23069 * 7 6 5 9 9 C 1.38811 * 120.00448 * 151.22549 * 7 6 5 10 10 N 1.31623 * 119.99932 * 161.18049 * 9 7 6 11 11 Si 1.86794 * 119.99908 * 341.18416 * 9 7 6 12 12 H 1.48500 * 109.47273 * 89.92754 * 11 9 7 13 13 H 1.48501 * 109.46959 * 209.92570 * 11 9 7 14 14 H 1.48500 * 109.47416 * 329.92752 * 11 9 7 15 15 C 1.46932 * 118.76374 * 306.40814 * 6 5 4 16 16 C 1.53040 * 109.46205 * 119.97692 * 2 1 3 17 17 H 1.08995 * 109.49796 * 61.39238 * 16 2 1 18 18 N 1.46500 * 109.49069 * 301.33310 * 16 2 1 19 19 C 1.34777 * 119.99858 * 155.06904 * 18 16 2 20 20 O 1.21592 * 120.00196 * 359.97438 * 19 18 16 21 21 C 1.47557 * 120.00199 * 179.97438 * 19 18 16 22 22 C 1.38691 * 120.38638 * 354.05415 * 21 19 18 23 23 C 1.38971 * 120.53804 * 179.97438 * 22 21 19 24 24 C 1.36209 * 121.23741 * 359.97438 * 23 22 21 25 25 C 1.40717 * 120.20086 * 359.97438 * 24 23 22 26 26 N 1.33686 * 120.94472 * 180.02562 * 25 24 23 27 27 C 1.31066 * 121.34060 * 179.97438 * 26 25 24 28 28 C 1.39342 * 121.70652 * 0.02562 * 27 26 25 29 29 C 1.36671 * 119.86776 * 359.71804 * 28 27 26 30 30 C 1.40476 * 118.17059 * 0.48888 * 29 28 27 31 31 H 1.09005 * 109.46692 * 300.03109 * 1 2 3 32 32 H 1.09007 * 109.47499 * 60.02301 * 1 2 3 33 33 H 1.08996 * 109.47930 * 180.02562 * 1 2 3 34 34 H 1.08995 * 109.49475 * 298.56540 * 4 2 1 35 35 H 1.08999 * 109.49579 * 58.66626 * 4 2 1 36 36 H 1.09004 * 109.58345 * 174.42604 * 5 4 2 37 37 H 1.09002 * 109.58315 * 294.70159 * 5 4 2 38 38 H 0.96996 * 119.99576 * 180.02562 * 10 9 7 39 39 H 1.09003 * 109.56278 * 293.78730 * 15 6 5 40 40 H 1.09001 * 109.61850 * 173.36044 * 15 6 5 41 41 H 0.97001 * 120.00375 * 335.05791 * 18 16 2 42 42 H 1.08004 * 119.73385 * 359.95672 * 22 21 19 43 43 H 1.08001 * 119.38368 * 179.97438 * 23 22 21 44 44 H 1.07997 * 119.90019 * 180.02562 * 24 23 22 45 45 H 1.08000 * 119.14431 * 179.97438 * 27 26 25 46 46 H 1.08001 * 120.06514 * 179.97438 * 28 27 26 47 47 H 1.08005 * 120.91546 * 180.28368 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8930 1.0278 0.0000 4 6 2.0397 -0.7207 -1.2503 5 6 3.5713 -0.6886 -1.2644 6 7 4.0678 -1.2490 -0.0003 7 6 4.9759 -2.2738 -0.0004 8 1 4.9971 -2.9765 -0.8204 9 6 5.8693 -2.4097 1.0533 10 7 6.4770 -3.5594 1.2568 11 14 6.2092 -0.9609 2.1823 12 1 5.2507 -0.9816 3.3164 13 1 7.5961 -1.0551 2.7046 14 1 6.0509 0.3058 1.4236 15 6 3.5714 -0.6896 1.2644 16 6 2.0399 -0.7210 1.2499 17 1 1.6972 -1.7556 1.2383 18 7 1.5256 -0.0490 2.4458 19 6 1.3984 -0.7323 3.6006 20 8 1.7100 -1.9065 3.6497 21 6 0.8810 -0.0553 4.8053 22 6 0.6392 1.3103 4.7934 23 6 0.1514 1.9509 5.9260 24 6 -0.1025 1.2618 7.0731 25 6 0.1269 -0.1254 7.1311 26 7 -0.1176 -0.8165 8.2490 27 6 0.0927 -2.1086 8.3114 28 6 0.5804 -2.8248 7.2201 29 6 0.8459 -2.1784 6.0455 30 6 0.6229 -0.7927 5.9860 31 1 -0.3633 0.5144 0.8898 32 1 -0.3634 0.5135 -0.8902 33 1 -0.3635 -1.0276 0.0005 34 1 1.6976 -1.7555 -1.2385 35 1 1.6570 -0.2205 -2.1399 36 1 3.9415 -1.2844 -2.0987 37 1 3.9141 0.3407 -1.3700 38 1 7.1010 -3.6544 1.9933 39 1 3.9148 0.3398 1.3679 40 1 3.9412 -1.2859 2.0985 41 1 1.2768 0.8878 2.4067 42 1 0.8318 1.8806 3.8966 43 1 -0.0299 3.0152 5.8962 44 1 -0.4817 1.7814 7.9406 45 1 -0.1166 -2.6317 9.2328 46 1 0.7444 -3.8892 7.3010 47 1 1.2200 -2.7175 5.1877 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000967589551.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:26:11 Heat of formation + Delta-G solvation = 50.479934 kcal Electronic energy + Delta-G solvation = -29823.839321 eV Core-core repulsion = 25972.260524 eV Total energy + Delta-G solvation = -3851.578797 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.18757 -39.71238 -37.99066 -37.03578 -34.68298 -33.42235 -33.36542 -31.39335 -30.73765 -30.67997 -29.05252 -27.61938 -24.89914 -23.99306 -23.76399 -23.51375 -22.37051 -21.14421 -20.59402 -19.58968 -18.34275 -17.69351 -16.98594 -16.87352 -16.26418 -15.85600 -15.32189 -14.95514 -14.93146 -14.54770 -14.34689 -14.09725 -13.94374 -13.72353 -13.49084 -13.38429 -13.22255 -12.92897 -12.49764 -12.34427 -12.29651 -12.03300 -11.88645 -11.88240 -11.53749 -11.42193 -10.91167 -10.73200 -10.59374 -10.57506 -10.29838 -10.22749 -10.01767 -9.77129 -9.49251 -9.23199 -8.99558 -8.96178 -8.56616 -8.41355 -6.97159 -5.93998 -3.32501 -0.01311 0.63936 1.64929 2.51691 3.14972 3.22833 3.36394 3.47006 3.49886 4.00408 4.08230 4.43451 4.48762 4.54465 4.64188 4.72447 4.90688 4.91466 4.95320 5.00830 5.08141 5.16200 5.20704 5.28170 5.42575 5.58029 5.65670 5.70914 5.77286 5.78018 5.78940 5.87905 5.97381 5.99966 6.01894 6.06943 6.20243 6.24693 6.27334 6.37392 6.45946 6.54233 6.58151 6.61617 6.63821 6.76130 6.90716 7.58379 7.72710 7.96877 8.32032 8.34238 8.93279 9.72241 10.08103 11.21873 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.011944 B = 0.003936 C = 0.003372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2343.650214 B = 7112.742673 C = 8301.820417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.092 4.092 3 H 0.069 0.931 4 C -0.127 4.127 5 C 0.145 3.855 6 N -0.601 5.601 7 C -0.264 4.264 8 H 0.087 0.913 9 C 0.030 3.970 10 N -0.905 5.905 11 Si 0.882 3.118 12 H -0.286 1.286 13 H -0.303 1.303 14 H -0.272 1.272 15 C 0.118 3.882 16 C 0.132 3.868 17 H 0.095 0.905 18 N -0.713 5.713 19 C 0.554 3.446 20 O -0.521 6.521 21 C -0.103 4.103 22 C -0.081 4.081 23 C -0.111 4.111 24 C -0.071 4.071 25 C 0.119 3.881 26 N -0.482 5.482 27 C 0.133 3.867 28 C -0.181 4.181 29 C -0.057 4.057 30 C -0.068 4.068 31 H 0.049 0.951 32 H 0.053 0.947 33 H 0.054 0.946 34 H 0.065 0.935 35 H 0.061 0.939 36 H 0.066 0.934 37 H 0.023 0.977 38 H 0.263 0.737 39 H 0.023 0.977 40 H 0.081 0.919 41 H 0.394 0.606 42 H 0.132 0.868 43 H 0.136 0.864 44 H 0.138 0.862 45 H 0.159 0.841 46 H 0.140 0.860 47 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.581 11.062 7.426 21.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.112 4.112 3 H 0.087 0.913 4 C -0.166 4.166 5 C 0.019 3.981 6 N -0.324 5.324 7 C -0.392 4.392 8 H 0.104 0.896 9 C -0.170 4.170 10 N -0.547 5.547 11 Si 0.712 3.288 12 H -0.214 1.214 13 H -0.231 1.231 14 H -0.198 1.198 15 C -0.009 4.009 16 C 0.027 3.973 17 H 0.113 0.887 18 N -0.364 5.364 19 C 0.341 3.659 20 O -0.398 6.398 21 C -0.107 4.107 22 C -0.100 4.100 23 C -0.131 4.131 24 C -0.089 4.089 25 C -0.003 4.003 26 N -0.190 5.190 27 C -0.039 4.039 28 C -0.200 4.200 29 C -0.082 4.082 30 C -0.071 4.071 31 H 0.068 0.932 32 H 0.072 0.928 33 H 0.074 0.926 34 H 0.084 0.916 35 H 0.079 0.921 36 H 0.084 0.916 37 H 0.041 0.959 38 H 0.073 0.927 39 H 0.041 0.959 40 H 0.099 0.901 41 H 0.229 0.771 42 H 0.150 0.850 43 H 0.154 0.846 44 H 0.156 0.844 45 H 0.176 0.824 46 H 0.157 0.843 47 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -16.518 10.648 8.180 21.287 hybrid contribution 0.514 0.811 0.129 0.969 sum -16.004 11.459 8.309 21.366 Atomic orbital electron populations 1.21845 0.95467 1.01920 1.00957 1.21315 0.95084 0.99607 0.95156 0.91304 1.22076 0.98556 1.00529 0.95476 1.20995 0.91012 0.96642 0.89450 1.44270 1.48612 1.40493 0.99044 1.18890 1.08784 1.02689 1.08857 0.89556 1.25279 0.96987 0.96597 0.98101 1.69809 1.30964 1.22739 1.31222 0.86983 0.76192 0.84690 0.80911 1.21403 1.23113 1.19766 1.21744 0.90821 0.97235 0.91080 1.21872 0.96224 0.97483 0.81765 0.88740 1.46056 1.65707 1.14204 1.10450 1.18096 0.78309 0.86579 0.82941 1.90630 1.49666 1.15790 1.83749 1.20010 1.02614 0.94082 0.93966 1.21421 0.96480 0.93213 0.98886 1.20799 0.99239 1.00582 0.92438 1.20965 0.97750 0.91627 0.98604 1.18848 0.97927 0.94373 0.89118 1.68044 1.16879 1.08872 1.25224 1.23011 0.92676 0.89864 0.98339 1.22087 1.01631 1.02120 0.94205 1.22767 0.91973 0.93385 1.00058 1.18658 1.00110 0.94789 0.93502 0.93193 0.92781 0.92639 0.91578 0.92059 0.91576 0.95903 0.92713 0.95875 0.90099 0.77108 0.85010 0.84584 0.84418 0.82381 0.84259 0.80206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.63 9.02 37.16 0.34 -1.30 16 2 C -0.09 -1.29 2.27 -90.57 -0.21 -1.50 16 3 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 4 C -0.13 -1.91 5.36 -26.60 -0.14 -2.05 16 5 C 0.14 2.72 6.52 -3.71 -0.02 2.70 16 6 N -0.60 -14.21 2.76 -172.31 -0.47 -14.69 16 7 C -0.26 -7.47 10.04 -15.06 -0.15 -7.62 16 8 H 0.09 2.58 8.06 -52.48 -0.42 2.16 16 9 C 0.03 0.89 5.25 -17.43 -0.09 0.80 16 10 N -0.90 -28.40 13.97 55.49 0.78 -27.63 16 11 Si 0.88 23.29 24.32 -169.99 -4.13 19.15 16 12 H -0.29 -7.59 6.52 56.52 0.37 -7.22 16 13 H -0.30 -8.09 7.11 56.52 0.40 -7.69 16 14 H -0.27 -6.95 6.73 56.52 0.38 -6.57 16 15 C 0.12 2.61 3.77 -3.71 -0.01 2.59 16 16 C 0.13 2.31 2.06 -67.81 -0.14 2.17 16 17 H 0.09 1.91 7.58 -51.93 -0.39 1.52 16 18 N -0.71 -10.47 4.32 -54.73 -0.24 -10.70 16 19 C 0.55 9.23 7.69 -12.46 -0.10 9.13 16 20 O -0.52 -10.66 13.07 5.28 0.07 -10.59 16 21 C -0.10 -1.45 5.90 -104.66 -0.62 -2.06 16 22 C -0.08 -0.84 9.51 -39.14 -0.37 -1.21 16 23 C -0.11 -0.99 9.92 -40.04 -0.40 -1.39 16 24 C -0.07 -0.75 9.96 -39.38 -0.39 -1.14 16 25 C 0.12 1.61 6.60 -84.88 -0.56 1.05 16 26 N -0.48 -6.40 10.34 -10.99 -0.11 -6.51 16 27 C 0.13 1.51 11.15 -17.47 -0.19 1.32 16 28 C -0.18 -2.18 10.03 -39.74 -0.40 -2.57 16 29 C -0.06 -0.85 9.29 -39.31 -0.37 -1.21 16 30 C -0.07 -1.01 5.76 -106.53 -0.61 -1.62 16 31 H 0.05 0.50 7.36 -51.93 -0.38 0.12 16 32 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 34 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 35 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.07 1.24 7.93 -51.93 -0.41 0.83 16 37 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.26 7.88 8.31 -40.82 -0.34 7.54 16 39 H 0.02 0.50 7.09 -51.93 -0.37 0.14 16 40 H 0.08 2.09 4.49 -51.93 -0.23 1.86 16 41 H 0.39 4.31 6.38 -40.82 -0.26 4.05 16 42 H 0.13 0.99 6.43 -52.48 -0.34 0.66 16 43 H 0.14 0.76 8.06 -52.49 -0.42 0.34 16 44 H 0.14 1.18 8.06 -52.49 -0.42 0.76 16 45 H 0.16 1.21 8.06 -52.49 -0.42 0.79 16 46 H 0.14 1.31 8.06 -52.49 -0.42 0.89 16 47 H 0.18 3.05 4.97 -52.50 -0.26 2.79 16 LS Contribution 368.90 15.07 5.56 5.56 Total: -1.00 -35.11 368.90 -9.48 -44.60 By element: Atomic # 1 Polarization: 11.25 SS G_CDS: -6.49 Total: 4.76 kcal Atomic # 6 Polarization: 0.49 SS G_CDS: -4.44 Total: -3.95 kcal Atomic # 7 Polarization: -59.48 SS G_CDS: -0.05 Total: -59.53 kcal Atomic # 8 Polarization: -10.66 SS G_CDS: 0.07 Total: -10.59 kcal Atomic # 14 Polarization: 23.29 SS G_CDS: -4.13 Total: 19.15 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -35.11 -9.48 -44.60 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000967589551.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.079 kcal (2) G-P(sol) polarization free energy of solvation -35.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.599 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds