Wall clock time and date at job start Tue Mar 31 2020 22:26:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09008 * 109.45748 * 2 1 4 4 C 1.53072 * 109.45319 * 119.81731 * 2 1 3 5 5 C 1.53195 * 109.29485 * 181.24261 * 4 2 1 6 6 N 1.46921 * 108.89432 * 305.58021 * 5 4 2 7 7 C 1.36937 * 120.63170 * 233.51479 * 6 5 4 8 8 H 1.07997 * 119.99755 * 31.16709 * 7 6 5 9 9 C 1.38810 * 119.99837 * 211.17015 * 7 6 5 10 10 N 1.31618 * 120.00650 * 9.84100 * 9 7 6 11 11 Si 1.86806 * 119.99940 * 189.83750 * 9 7 6 12 12 H 1.48504 * 109.46937 * 60.00035 * 11 9 7 13 13 H 1.48497 * 109.47453 * 180.02562 * 11 9 7 14 14 H 1.48502 * 109.46855 * 300.00433 * 11 9 7 15 15 C 1.46929 * 118.73799 * 53.53716 * 6 5 4 16 16 C 1.53044 * 109.46179 * 240.03197 * 2 1 3 17 17 H 1.09002 * 109.52280 * 298.57936 * 16 2 1 18 18 N 1.46505 * 109.49673 * 58.66048 * 16 2 1 19 19 C 1.34779 * 119.99778 * 204.83996 * 18 16 2 20 20 O 1.21593 * 119.99939 * 359.97438 * 19 18 16 21 21 C 1.47547 * 119.99906 * 180.02562 * 19 18 16 22 22 C 1.38699 * 120.38677 * 5.87203 * 21 19 18 23 23 C 1.38974 * 120.53683 * 179.69915 * 22 21 19 24 24 C 1.36207 * 121.23370 * 0.58258 * 23 22 21 25 25 C 1.40703 * 120.20281 * 359.72380 * 24 23 22 26 26 N 1.33692 * 120.93753 * 179.97438 * 25 24 23 27 27 C 1.31065 * 121.34337 * 180.02562 * 26 25 24 28 28 C 1.39343 * 121.70474 * 359.95421 * 27 26 25 29 29 C 1.36673 * 119.86846 * 0.02562 * 28 27 26 30 30 C 1.40467 * 118.17372 * 359.97438 * 29 28 27 31 31 H 1.08998 * 109.46877 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.47248 * 299.97164 * 1 2 3 33 33 H 1.09003 * 109.46660 * 59.96985 * 1 2 3 34 34 H 1.08998 * 109.38614 * 61.36883 * 4 2 1 35 35 H 1.09000 * 109.62205 * 301.26385 * 4 2 1 36 36 H 1.08993 * 109.58608 * 185.72027 * 5 4 2 37 37 H 1.09003 * 109.58669 * 65.44083 * 5 4 2 38 38 H 0.96999 * 120.00470 * 180.02562 * 10 9 7 39 39 H 1.09000 * 109.58468 * 66.17778 * 15 6 5 40 40 H 1.08997 * 109.58326 * 186.60268 * 15 6 5 41 41 H 0.96998 * 120.00196 * 24.83804 * 18 16 2 42 42 H 1.07993 * 119.72869 * 359.97438 * 22 21 19 43 43 H 1.07994 * 119.38092 * 180.30296 * 23 22 21 44 44 H 1.08004 * 119.89705 * 179.70049 * 24 23 22 45 45 H 1.07996 * 119.14383 * 179.97438 * 27 26 25 46 46 H 1.07998 * 120.06386 * 179.97438 * 28 27 26 47 47 H 1.07997 * 120.90880 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0278 0.0000 4 6 2.0398 -0.7177 1.2523 5 6 3.5714 -0.6884 1.2643 6 7 4.0679 -1.2487 0.0001 7 6 4.9765 -2.2733 0.0001 8 1 4.9727 -2.9983 0.8006 9 6 5.9023 -2.3799 -1.0286 10 7 6.0381 -1.3994 -1.8961 11 14 6.9557 -3.9150 -1.1817 12 1 6.0798 -5.1003 -1.3631 13 1 7.8578 -3.7815 -2.3537 14 1 7.7674 -4.0832 0.0504 15 6 3.5714 -0.6886 -1.2642 16 6 2.0399 -0.7208 -1.2501 17 1 1.6979 -1.7557 -1.2388 18 7 1.5256 -0.0488 -2.4460 19 6 1.4002 -0.7316 -3.6012 20 8 1.7144 -1.9052 -3.6510 21 6 0.8827 -0.0547 -4.8058 22 6 0.6376 1.3104 -4.7928 23 6 0.1561 1.9523 -5.9275 24 6 -0.0988 1.2629 -7.0743 25 6 0.1290 -0.1244 -7.1317 26 7 -0.1165 -0.8155 -8.2494 27 6 0.0923 -2.1079 -8.3116 28 6 0.5799 -2.8243 -7.2204 29 6 0.8517 -2.1769 -6.0477 30 6 0.6260 -0.7919 -5.9870 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5134 0.8902 33 1 -0.3633 0.5143 -0.8898 34 1 1.6957 -1.7519 1.2419 35 1 1.6593 -0.2161 2.1421 36 1 3.9417 -1.2842 2.0984 37 1 3.9164 0.3403 1.3685 38 1 6.6848 -1.4741 -2.6152 39 1 3.9143 0.3410 -1.3673 40 1 3.9417 -1.2845 -2.0983 41 1 1.2753 0.8875 -2.4064 42 1 0.8266 1.8799 -3.8949 43 1 -0.0236 3.0167 -5.8981 44 1 -0.4772 1.7827 -7.9420 45 1 -0.1186 -2.6311 -9.2325 46 1 0.7418 -3.8890 -7.3008 47 1 1.2297 -2.7156 -5.1914 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000967589555.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:26:19 Heat of formation + Delta-G solvation = 44.086418 kcal Electronic energy + Delta-G solvation = -29661.463032 eV Core-core repulsion = 25809.606991 eV Total energy + Delta-G solvation = -3851.856041 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.07311 -39.48778 -37.72143 -36.91721 -34.46397 -33.32025 -33.23040 -31.04526 -30.62814 -30.46435 -28.62198 -27.34449 -24.78550 -24.12624 -23.59531 -23.34647 -21.90669 -21.03304 -20.33261 -19.39705 -18.23043 -17.55798 -16.89410 -16.77054 -16.10325 -15.64088 -15.03650 -14.85629 -14.70894 -14.39487 -14.04868 -13.87132 -13.75272 -13.59618 -13.40103 -13.26852 -13.01151 -12.77087 -12.45172 -12.20392 -11.98448 -11.81071 -11.67572 -11.60890 -11.43781 -10.87290 -10.74183 -10.69140 -10.50140 -10.47523 -10.20041 -10.10406 -9.97644 -9.81644 -9.53236 -9.09175 -8.90697 -8.66326 -8.44937 -8.30996 -6.62216 -5.75849 -3.25379 0.09189 0.72682 1.74881 2.62350 3.33245 3.40090 3.42166 3.46679 3.47776 4.10305 4.16257 4.50537 4.58403 4.59715 4.73643 4.84289 5.00133 5.03148 5.13965 5.22249 5.24564 5.35260 5.37935 5.51058 5.57318 5.68333 5.76242 5.86419 5.88137 5.96776 5.99558 6.08752 6.09313 6.12041 6.20825 6.30061 6.36217 6.42705 6.46702 6.56381 6.68627 6.71110 6.75355 6.92256 6.95183 7.28369 7.74453 7.78521 7.80459 7.84511 8.48628 8.52934 9.22962 9.84744 10.40781 11.31357 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.011057 B = 0.003760 C = 0.003076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2531.653656 B = 7444.914152 C = 9100.040118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.092 4.092 3 H 0.067 0.933 4 C -0.125 4.125 5 C 0.142 3.858 6 N -0.588 5.588 7 C -0.257 4.257 8 H 0.065 0.935 9 C 0.009 3.991 10 N -0.902 5.902 11 Si 0.905 3.095 12 H -0.282 1.282 13 H -0.290 1.290 14 H -0.282 1.282 15 C 0.167 3.833 16 C 0.123 3.877 17 H 0.084 0.916 18 N -0.707 5.707 19 C 0.556 3.444 20 O -0.525 6.525 21 C -0.099 4.099 22 C -0.082 4.082 23 C -0.109 4.109 24 C -0.074 4.074 25 C 0.118 3.882 26 N -0.483 5.483 27 C 0.132 3.868 28 C -0.183 4.183 29 C -0.055 4.055 30 C -0.068 4.068 31 H 0.052 0.948 32 H 0.050 0.950 33 H 0.048 0.952 34 H 0.060 0.940 35 H 0.056 0.944 36 H 0.055 0.945 37 H 0.018 0.982 38 H 0.255 0.745 39 H 0.017 0.983 40 H 0.099 0.901 41 H 0.392 0.608 42 H 0.132 0.868 43 H 0.136 0.864 44 H 0.137 0.863 45 H 0.158 0.842 46 H 0.138 0.862 47 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.985 6.317 -6.473 17.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.112 4.112 3 H 0.085 0.915 4 C -0.165 4.165 5 C 0.015 3.985 6 N -0.310 5.310 7 C -0.387 4.387 8 H 0.082 0.918 9 C -0.190 4.190 10 N -0.546 5.546 11 Si 0.734 3.266 12 H -0.208 1.208 13 H -0.216 1.216 14 H -0.208 1.208 15 C 0.040 3.960 16 C 0.018 3.982 17 H 0.102 0.898 18 N -0.357 5.357 19 C 0.342 3.658 20 O -0.403 6.403 21 C -0.103 4.103 22 C -0.101 4.101 23 C -0.129 4.129 24 C -0.093 4.093 25 C -0.003 4.003 26 N -0.191 5.191 27 C -0.040 4.040 28 C -0.203 4.203 29 C -0.080 4.080 30 C -0.070 4.070 31 H 0.071 0.929 32 H 0.069 0.931 33 H 0.067 0.933 34 H 0.079 0.921 35 H 0.074 0.926 36 H 0.074 0.926 37 H 0.036 0.964 38 H 0.065 0.935 39 H 0.035 0.965 40 H 0.117 0.883 41 H 0.226 0.774 42 H 0.150 0.850 43 H 0.153 0.847 44 H 0.155 0.845 45 H 0.175 0.825 46 H 0.156 0.844 47 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -14.924 6.027 -7.289 17.669 hybrid contribution 0.808 -0.646 0.484 1.142 sum -14.116 5.381 -6.805 16.569 Atomic orbital electron populations 1.21859 0.96007 1.01611 1.00732 1.21315 0.94540 0.99712 0.95587 0.91492 1.22074 0.98989 1.00044 0.95381 1.20969 0.90748 0.96499 0.90249 1.43911 1.48292 1.39719 0.99116 1.19102 1.07712 1.02454 1.09413 0.91776 1.25146 0.97136 0.97443 0.99278 1.69930 1.36648 1.30706 1.17294 0.86341 0.80054 0.83007 0.77164 1.20829 1.21591 1.20850 1.21140 0.86050 0.97564 0.91285 1.22103 0.98657 0.96368 0.81112 0.89798 1.46004 1.65201 1.14034 1.10458 1.18001 0.78365 0.86529 0.82877 1.90597 1.50018 1.15976 1.83750 1.20060 1.02121 0.94056 0.94056 1.21430 0.96480 0.93285 0.98869 1.20801 0.99132 1.00529 0.92442 1.20938 0.98083 0.91629 0.98615 1.18846 0.97940 0.94363 0.89125 1.68036 1.16914 1.08844 1.25303 1.22982 0.92861 0.89901 0.98284 1.22061 1.01959 1.01993 0.94321 1.22768 0.91826 0.93434 0.99954 1.18657 1.00088 0.94762 0.93534 0.92900 0.93071 0.93294 0.92132 0.92559 0.92617 0.96432 0.93540 0.96541 0.88341 0.77368 0.84977 0.84660 0.84528 0.82518 0.84432 0.80200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.81 9.02 37.16 0.34 -1.47 16 2 C -0.09 -1.42 2.26 -90.56 -0.20 -1.62 16 3 H 0.07 1.00 8.14 -51.92 -0.42 0.57 16 4 C -0.13 -2.05 5.37 -26.59 -0.14 -2.19 16 5 C 0.14 2.87 6.51 -3.71 -0.02 2.85 16 6 N -0.59 -14.65 2.99 -172.33 -0.52 -15.17 16 7 C -0.26 -7.13 9.59 -15.06 -0.14 -7.27 16 8 H 0.06 1.74 7.85 -52.49 -0.41 1.32 16 9 C 0.01 0.26 5.07 -17.43 -0.09 0.17 16 10 N -0.90 -26.64 10.98 55.49 0.61 -26.03 16 11 Si 0.90 22.27 29.56 -169.99 -5.03 17.24 16 12 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 13 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 14 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 15 C 0.17 3.96 4.83 -3.71 -0.02 3.95 16 16 C 0.12 2.29 2.07 -67.81 -0.14 2.15 16 17 H 0.08 1.79 7.58 -51.93 -0.39 1.40 16 18 N -0.71 -11.10 4.32 -54.72 -0.24 -11.34 16 19 C 0.56 9.64 7.69 -12.46 -0.10 9.54 16 20 O -0.53 -11.00 13.08 5.28 0.07 -10.93 16 21 C -0.10 -1.45 5.90 -104.66 -0.62 -2.07 16 22 C -0.08 -0.91 9.52 -39.14 -0.37 -1.28 16 23 C -0.11 -1.05 9.92 -40.04 -0.40 -1.45 16 24 C -0.07 -0.83 9.96 -39.38 -0.39 -1.22 16 25 C 0.12 1.66 6.60 -84.88 -0.56 1.10 16 26 N -0.48 -6.61 10.34 -10.99 -0.11 -6.72 16 27 C 0.13 1.54 11.15 -17.47 -0.19 1.35 16 28 C -0.18 -2.26 10.03 -39.74 -0.40 -2.66 16 29 C -0.05 -0.84 9.29 -39.31 -0.37 -1.20 16 30 C -0.07 -1.03 5.76 -106.53 -0.61 -1.65 16 31 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.05 0.55 7.35 -51.93 -0.38 0.17 16 34 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 35 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.06 1.11 7.93 -51.93 -0.41 0.70 16 37 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 38 H 0.25 7.35 8.31 -40.82 -0.34 7.02 16 39 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.10 2.78 6.06 -51.93 -0.31 2.47 16 41 H 0.39 4.81 6.37 -40.82 -0.26 4.55 16 42 H 0.13 1.13 6.42 -52.49 -0.34 0.79 16 43 H 0.14 0.85 8.06 -52.49 -0.42 0.43 16 44 H 0.14 1.24 8.06 -52.48 -0.42 0.82 16 45 H 0.16 1.25 8.06 -52.49 -0.42 0.83 16 46 H 0.14 1.32 8.06 -52.49 -0.42 0.90 16 47 H 0.18 3.09 4.97 -52.50 -0.26 2.83 16 LS Contribution 375.22 15.07 5.65 5.65 Total: -1.00 -33.32 375.22 -10.55 -43.87 By element: Atomic # 1 Polarization: 12.97 SS G_CDS: -6.56 Total: 6.41 kcal Atomic # 6 Polarization: 1.45 SS G_CDS: -4.44 Total: -2.98 kcal Atomic # 7 Polarization: -59.00 SS G_CDS: -0.26 Total: -59.26 kcal Atomic # 8 Polarization: -11.00 SS G_CDS: 0.07 Total: -10.93 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.03 Total: 17.24 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -33.32 -10.55 -43.87 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000967589555.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.953 kcal (2) G-P(sol) polarization free energy of solvation -33.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.867 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds