Wall clock time and date at job start Tue Mar 31 2020 22:26:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09008 * 109.45748 * 2 1 4 4 C 1.53072 * 109.45319 * 119.81731 * 2 1 3 5 5 C 1.53195 * 109.29485 * 181.24261 * 4 2 1 6 6 N 1.46921 * 108.89432 * 305.58021 * 5 4 2 7 7 C 1.36937 * 120.63170 * 233.51479 * 6 5 4 8 8 H 1.07997 * 119.99755 * 31.16709 * 7 6 5 9 9 C 1.38810 * 119.99837 * 211.17015 * 7 6 5 10 10 N 1.31618 * 120.00650 * 9.84100 * 9 7 6 11 11 Si 1.86806 * 119.99940 * 189.83750 * 9 7 6 12 12 H 1.48504 * 109.46937 * 60.00035 * 11 9 7 13 13 H 1.48497 * 109.47453 * 180.02562 * 11 9 7 14 14 H 1.48502 * 109.46855 * 300.00433 * 11 9 7 15 15 C 1.46929 * 118.73799 * 53.53716 * 6 5 4 16 16 C 1.53044 * 109.46179 * 240.03197 * 2 1 3 17 17 H 1.09002 * 109.52280 * 298.57936 * 16 2 1 18 18 N 1.46505 * 109.49673 * 58.66048 * 16 2 1 19 19 C 1.34779 * 119.99778 * 204.83996 * 18 16 2 20 20 O 1.21593 * 119.99939 * 359.97438 * 19 18 16 21 21 C 1.47547 * 119.99906 * 180.02562 * 19 18 16 22 22 C 1.38699 * 120.38677 * 5.87203 * 21 19 18 23 23 C 1.38974 * 120.53683 * 179.69915 * 22 21 19 24 24 C 1.36207 * 121.23370 * 0.58258 * 23 22 21 25 25 C 1.40703 * 120.20281 * 359.72380 * 24 23 22 26 26 N 1.33692 * 120.93753 * 179.97438 * 25 24 23 27 27 C 1.31065 * 121.34337 * 180.02562 * 26 25 24 28 28 C 1.39343 * 121.70474 * 359.95421 * 27 26 25 29 29 C 1.36673 * 119.86846 * 0.02562 * 28 27 26 30 30 C 1.40467 * 118.17372 * 359.97438 * 29 28 27 31 31 H 1.08998 * 109.46877 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.47248 * 299.97164 * 1 2 3 33 33 H 1.09003 * 109.46660 * 59.96985 * 1 2 3 34 34 H 1.08998 * 109.38614 * 61.36883 * 4 2 1 35 35 H 1.09000 * 109.62205 * 301.26385 * 4 2 1 36 36 H 1.08993 * 109.58608 * 185.72027 * 5 4 2 37 37 H 1.09003 * 109.58669 * 65.44083 * 5 4 2 38 38 H 0.96999 * 120.00470 * 180.02562 * 10 9 7 39 39 H 1.09000 * 109.58468 * 66.17778 * 15 6 5 40 40 H 1.08997 * 109.58326 * 186.60268 * 15 6 5 41 41 H 0.96998 * 120.00196 * 24.83804 * 18 16 2 42 42 H 1.07993 * 119.72869 * 359.97438 * 22 21 19 43 43 H 1.07994 * 119.38092 * 180.30296 * 23 22 21 44 44 H 1.08004 * 119.89705 * 179.70049 * 24 23 22 45 45 H 1.07996 * 119.14383 * 179.97438 * 27 26 25 46 46 H 1.07998 * 120.06386 * 179.97438 * 28 27 26 47 47 H 1.07997 * 120.90880 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0278 0.0000 4 6 2.0398 -0.7177 1.2523 5 6 3.5714 -0.6884 1.2643 6 7 4.0679 -1.2487 0.0001 7 6 4.9765 -2.2733 0.0001 8 1 4.9727 -2.9983 0.8006 9 6 5.9023 -2.3799 -1.0286 10 7 6.0381 -1.3994 -1.8961 11 14 6.9557 -3.9150 -1.1817 12 1 6.0798 -5.1003 -1.3631 13 1 7.8578 -3.7815 -2.3537 14 1 7.7674 -4.0832 0.0504 15 6 3.5714 -0.6886 -1.2642 16 6 2.0399 -0.7208 -1.2501 17 1 1.6979 -1.7557 -1.2388 18 7 1.5256 -0.0488 -2.4460 19 6 1.4002 -0.7316 -3.6012 20 8 1.7144 -1.9052 -3.6510 21 6 0.8827 -0.0547 -4.8058 22 6 0.6376 1.3104 -4.7928 23 6 0.1561 1.9523 -5.9275 24 6 -0.0988 1.2629 -7.0743 25 6 0.1290 -0.1244 -7.1317 26 7 -0.1165 -0.8155 -8.2494 27 6 0.0923 -2.1079 -8.3116 28 6 0.5799 -2.8243 -7.2204 29 6 0.8517 -2.1769 -6.0477 30 6 0.6260 -0.7919 -5.9870 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5134 0.8902 33 1 -0.3633 0.5143 -0.8898 34 1 1.6957 -1.7519 1.2419 35 1 1.6593 -0.2161 2.1421 36 1 3.9417 -1.2842 2.0984 37 1 3.9164 0.3403 1.3685 38 1 6.6848 -1.4741 -2.6152 39 1 3.9143 0.3410 -1.3673 40 1 3.9417 -1.2845 -2.0983 41 1 1.2753 0.8875 -2.4064 42 1 0.8266 1.8799 -3.8949 43 1 -0.0236 3.0167 -5.8981 44 1 -0.4772 1.7827 -7.9420 45 1 -0.1186 -2.6311 -9.2325 46 1 0.7418 -3.8890 -7.3008 47 1 1.2297 -2.7156 -5.1914 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000967589555.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:26:17 Heat of formation + Delta-G solvation = 23.003652 kcal Electronic energy + Delta-G solvation = -29662.377250 eV Core-core repulsion = 25809.606991 eV Total energy + Delta-G solvation = -3852.770258 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -42.12471 -40.81447 -39.18974 -37.91572 -36.16296 -34.78821 -34.33574 -32.86191 -31.67820 -31.55617 -30.05870 -28.96158 -26.07201 -25.66547 -24.74123 -24.40881 -23.29500 -22.62510 -21.69693 -20.86634 -19.27344 -18.75665 -18.59714 -17.87637 -17.25457 -17.04717 -16.80661 -16.11808 -15.84588 -15.65889 -15.44045 -15.30995 -15.16491 -14.89549 -14.84340 -14.46542 -14.11630 -14.09967 -13.94721 -13.47593 -13.29661 -13.08055 -13.01585 -12.74379 -12.70797 -12.60660 -12.38376 -12.34380 -12.18709 -11.92855 -11.64317 -11.53958 -11.46124 -11.21873 -11.15810 -10.58544 -10.31223 -10.12779 -9.83471 -9.33067 -8.65242 -7.89559 -5.41750 -0.90058 -0.21279 0.66544 1.39506 1.44014 1.49080 1.66344 2.05586 2.20371 2.47019 3.09209 3.26784 3.29645 3.49472 3.72498 3.76939 3.80546 3.82603 3.89146 3.99209 4.04426 4.12781 4.19073 4.40484 4.43910 4.48150 4.58653 4.66417 4.72588 4.77352 4.78924 4.92254 4.97959 5.02495 5.07944 5.12819 5.17918 5.22765 5.23767 5.29779 5.32583 5.44793 5.46657 5.53233 5.58247 5.60674 5.77705 5.80844 6.36742 6.54562 6.82147 7.11389 7.24190 7.83435 8.33050 9.13886 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.011057 B = 0.003760 C = 0.003076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2531.653656 B = 7444.914152 C = 9100.040118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.085 4.085 3 H 0.082 0.918 4 C -0.116 4.116 5 C 0.136 3.864 6 N -0.610 5.610 7 C -0.266 4.266 8 H 0.066 0.934 9 C -0.047 4.047 10 N -0.932 5.932 11 Si 0.964 3.036 12 H -0.283 1.283 13 H -0.294 1.294 14 H -0.267 1.267 15 C 0.179 3.821 16 C 0.140 3.860 17 H 0.050 0.950 18 N -0.695 5.695 19 C 0.550 3.450 20 O -0.574 6.574 21 C -0.136 4.136 22 C -0.059 4.059 23 C -0.100 4.100 24 C -0.070 4.070 25 C 0.096 3.904 26 N -0.492 5.492 27 C 0.130 3.870 28 C -0.174 4.174 29 C -0.093 4.093 30 C -0.087 4.087 31 H 0.040 0.960 32 H 0.079 0.921 33 H 0.063 0.937 34 H 0.048 0.952 35 H 0.097 0.903 36 H 0.054 0.946 37 H 0.022 0.978 38 H 0.247 0.753 39 H -0.001 1.001 40 H 0.045 0.955 41 H 0.411 0.589 42 H 0.162 0.838 43 H 0.183 0.817 44 H 0.162 0.838 45 H 0.197 0.803 46 H 0.160 0.840 47 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.323 8.755 -6.528 20.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.104 4.104 3 H 0.100 0.900 4 C -0.155 4.155 5 C 0.011 3.989 6 N -0.333 5.333 7 C -0.397 4.397 8 H 0.084 0.916 9 C -0.243 4.243 10 N -0.578 5.578 11 Si 0.791 3.209 12 H -0.209 1.209 13 H -0.221 1.221 14 H -0.192 1.192 15 C 0.052 3.948 16 C 0.034 3.966 17 H 0.068 0.932 18 N -0.346 5.346 19 C 0.339 3.661 20 O -0.455 6.455 21 C -0.140 4.140 22 C -0.078 4.078 23 C -0.119 4.119 24 C -0.088 4.088 25 C -0.025 4.025 26 N -0.200 5.200 27 C -0.042 4.042 28 C -0.194 4.194 29 C -0.119 4.119 30 C -0.089 4.089 31 H 0.060 0.940 32 H 0.098 0.902 33 H 0.082 0.918 34 H 0.067 0.933 35 H 0.116 0.884 36 H 0.073 0.927 37 H 0.040 0.960 38 H 0.056 0.944 39 H 0.017 0.983 40 H 0.064 0.936 41 H 0.250 0.750 42 H 0.179 0.821 43 H 0.200 0.800 44 H 0.180 0.820 45 H 0.214 0.786 46 H 0.178 0.822 47 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -17.297 8.510 -7.307 20.616 hybrid contribution 1.512 -1.371 0.469 2.094 sum -15.785 7.139 -6.838 18.625 Atomic orbital electron populations 1.21779 0.92994 1.01612 1.02904 1.21279 0.96885 0.99502 0.92736 0.89992 1.21977 0.95685 1.00212 0.97631 1.21177 0.93562 0.96211 0.87981 1.44193 1.48442 1.39686 1.01018 1.19463 1.07767 1.03277 1.09166 0.91611 1.25889 0.98817 1.00179 0.99395 1.70115 1.37360 1.32520 1.17801 0.85402 0.78487 0.79650 0.77322 1.20879 1.22059 1.19214 1.20804 0.89448 0.95057 0.89459 1.21564 0.95010 0.95855 0.84143 0.93184 1.45753 1.64683 1.14837 1.09308 1.18580 0.77459 0.86141 0.83901 1.90592 1.52052 1.18295 1.84603 1.19890 1.05573 0.95675 0.92872 1.21862 0.93641 0.91685 1.00615 1.21281 0.97247 1.02519 0.90847 1.21356 0.96928 0.90420 1.00126 1.19245 0.98682 0.95827 0.88772 1.68105 1.17105 1.09667 1.25147 1.23573 0.91864 0.89561 0.99242 1.22349 1.00391 1.03157 0.93467 1.22631 0.94463 0.94341 1.00438 1.18851 1.00744 0.94825 0.94504 0.94037 0.90226 0.91794 0.93297 0.88447 0.92728 0.95974 0.94427 0.98266 0.93604 0.75035 0.82077 0.80003 0.82040 0.78618 0.82195 0.83182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.95 9.02 71.98 0.65 -2.30 16 2 C -0.08 -2.45 2.26 -10.75 -0.02 -2.48 16 3 H 0.08 2.18 8.14 -2.38 -0.02 2.16 16 4 C -0.12 -3.58 5.37 30.68 0.16 -3.41 16 5 C 0.14 5.47 6.51 86.36 0.56 6.03 16 6 N -0.61 -31.52 2.99 -699.12 -2.09 -33.61 16 7 C -0.27 -15.34 9.59 84.03 0.81 -14.54 16 8 H 0.07 3.67 7.85 -2.91 -0.02 3.65 16 9 C -0.05 -2.78 5.07 84.86 0.43 -2.35 16 10 N -0.93 -58.15 10.98 21.65 0.24 -57.91 16 11 Si 0.96 47.60 29.56 68.60 2.03 49.62 16 12 H -0.28 -13.82 7.11 99.48 0.71 -13.11 16 13 H -0.29 -14.62 7.11 99.48 0.71 -13.91 16 14 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 15 C 0.18 9.01 4.83 86.36 0.42 9.42 16 16 C 0.14 5.41 2.07 45.07 0.09 5.50 16 17 H 0.05 2.28 7.58 -2.39 -0.02 2.26 16 18 N -0.69 -22.16 4.32 -445.30 -1.92 -24.09 16 19 C 0.55 20.27 7.69 86.70 0.67 20.93 16 20 O -0.57 -26.59 13.08 -4.01 -0.05 -26.64 16 21 C -0.14 -4.08 5.90 -19.89 -0.12 -4.19 16 22 C -0.06 -1.18 9.52 22.56 0.21 -0.97 16 23 C -0.10 -1.53 9.92 21.97 0.22 -1.31 16 24 C -0.07 -1.36 9.96 22.40 0.22 -1.14 16 25 C 0.10 2.61 6.60 40.27 0.27 2.87 16 26 N -0.49 -12.90 10.34 -188.68 -1.95 -14.86 16 27 C 0.13 2.90 11.15 85.07 0.95 3.85 16 28 C -0.17 -4.42 10.03 22.17 0.22 -4.19 16 29 C -0.09 -3.09 9.29 22.45 0.21 -2.88 16 30 C -0.09 -2.74 5.76 -21.10 -0.12 -2.86 16 31 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 32 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 33 H 0.06 1.21 7.35 -2.39 -0.02 1.19 16 34 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 35 H 0.10 2.28 8.14 -2.39 -0.02 2.26 16 36 H 0.05 2.17 7.93 -2.39 -0.02 2.15 16 37 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 38 H 0.25 15.09 8.31 -92.71 -0.77 14.32 16 39 H 0.00 -0.04 8.14 -2.39 -0.02 -0.06 16 40 H 0.05 2.79 6.06 -2.39 -0.01 2.77 16 41 H 0.41 9.45 6.37 -92.71 -0.59 8.86 16 42 H 0.16 2.14 6.42 -2.91 -0.02 2.13 16 43 H 0.18 1.15 8.06 -2.91 -0.02 1.13 16 44 H 0.16 2.31 8.06 -2.91 -0.02 2.29 16 45 H 0.20 2.65 8.06 -2.91 -0.02 2.62 16 46 H 0.16 3.12 8.06 -2.91 -0.02 3.09 16 47 H 0.15 5.89 4.97 -3.15 -0.02 5.87 16 Total: -1.00 -81.20 375.22 2.48 -78.72 By element: Atomic # 1 Polarization: 22.37 SS G_CDS: 0.40 Total: 22.77 kcal Atomic # 6 Polarization: 0.15 SS G_CDS: 5.83 Total: 5.98 kcal Atomic # 7 Polarization: -124.73 SS G_CDS: -5.73 Total: -130.46 kcal Atomic # 8 Polarization: -26.59 SS G_CDS: -0.05 Total: -26.64 kcal Atomic # 14 Polarization: 47.60 SS G_CDS: 2.03 Total: 49.62 kcal Total: -81.20 2.48 -78.72 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000967589555.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.724 kcal (2) G-P(sol) polarization free energy of solvation -81.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.720 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds