Wall clock time and date at job start Tue Mar 31 2020 22:24:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08995 * 109.44738 * 2 1 4 4 C 1.53039 * 109.45749 * 119.96448 * 2 1 3 5 5 C 1.53191 * 109.31150 * 181.38423 * 4 2 1 6 6 N 1.46921 * 108.77663 * 305.36712 * 5 4 2 7 7 C 1.36939 * 120.63014 * 233.58876 * 6 5 4 8 8 H 1.08006 * 119.99803 * 31.07036 * 7 6 5 9 9 C 1.38808 * 120.00365 * 211.07476 * 7 6 5 10 10 N 1.31620 * 119.99596 * 9.70681 * 9 7 6 11 11 Si 1.86800 * 120.00445 * 189.70927 * 9 7 6 12 12 H 1.48498 * 109.46882 * 0.02562 * 11 9 7 13 13 H 1.48501 * 109.47315 * 119.99795 * 11 9 7 14 14 H 1.48502 * 109.46956 * 239.99772 * 11 9 7 15 15 C 1.46923 * 118.74224 * 53.60118 * 6 5 4 16 16 C 1.53039 * 109.45908 * 240.02841 * 2 1 3 17 17 H 1.08998 * 109.52493 * 298.58664 * 16 2 1 18 18 N 1.46504 * 109.49517 * 58.66750 * 16 2 1 19 19 C 1.34777 * 119.99608 * 204.84111 * 18 16 2 20 20 O 1.21544 * 120.00301 * 359.97438 * 19 18 16 21 21 C 1.47954 * 119.99660 * 180.02562 * 19 18 16 22 22 N 1.32193 * 120.15749 * 5.19112 * 21 19 18 23 23 C 1.32029 * 122.67590 * 179.75120 * 22 21 19 24 24 C 1.36685 * 122.02926 * 0.53832 * 23 22 21 25 25 C 1.40534 * 118.85057 * 359.74392 * 24 23 22 26 26 C 1.40323 * 122.22475 * 179.97438 * 25 24 23 27 27 C 1.36208 * 119.44909 * 180.02562 * 26 25 24 28 28 C 1.39380 * 121.00293 * 359.97438 * 27 26 25 29 29 C 1.36256 * 121.08525 * 0.02562 * 28 27 26 30 30 C 1.40094 * 119.53432 * 359.97438 * 29 28 27 31 31 H 1.09002 * 109.47171 * 300.04119 * 1 2 3 32 32 H 1.09000 * 109.47178 * 60.03826 * 1 2 3 33 33 H 1.09000 * 109.47287 * 180.02562 * 1 2 3 34 34 H 1.09002 * 109.50029 * 61.42877 * 4 2 1 35 35 H 1.09004 * 109.49852 * 301.33694 * 4 2 1 36 36 H 1.09003 * 109.58774 * 65.15318 * 5 4 2 37 37 H 1.08995 * 109.58653 * 185.43362 * 5 4 2 38 38 H 0.97006 * 120.00180 * 179.97438 * 10 9 7 39 39 H 1.09006 * 109.58124 * 66.18421 * 15 6 5 40 40 H 1.08999 * 109.58673 * 186.60729 * 15 6 5 41 41 H 0.97001 * 120.00184 * 24.83286 * 18 16 2 42 42 H 1.08005 * 118.98755 * 180.25748 * 23 22 21 43 43 H 1.08007 * 120.57662 * 179.76457 * 24 23 22 44 44 H 1.07998 * 120.27518 * 0.02562 * 26 25 24 45 45 H 1.08007 * 119.49451 * 179.97438 * 27 26 25 46 46 H 1.08004 * 119.46087 * 179.97438 * 28 27 26 47 47 H 1.07990 * 120.23297 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8929 1.0278 0.0000 4 6 2.0398 -0.7207 1.2501 5 6 3.5713 -0.6886 1.2643 6 7 4.0678 -1.2488 0.0001 7 6 4.9764 -2.2734 0.0001 8 1 4.9735 -2.9977 0.8014 9 6 5.9010 -2.3813 -1.0295 10 7 6.0339 -1.4028 -1.8997 11 14 6.9566 -3.9150 -1.1802 12 1 6.6158 -4.8599 -0.0865 13 1 6.7024 -4.5641 -2.4914 14 1 8.3904 -3.5406 -1.0829 15 6 3.5713 -0.6887 -1.2642 16 6 2.0399 -0.7209 -1.2500 17 1 1.6978 -1.7557 -1.2388 18 7 1.5256 -0.0488 -2.4459 19 6 1.4001 -0.7316 -3.6011 20 8 1.7140 -1.9048 -3.6509 21 6 0.8813 -0.0527 -4.8090 22 7 0.6368 1.2462 -4.7874 23 6 0.1782 1.9027 -5.8371 24 6 -0.0873 1.2782 -7.0236 25 6 0.1409 -0.1046 -7.1280 26 6 -0.1075 -0.8167 -8.3112 27 6 0.1335 -2.1568 -8.3495 28 6 0.6233 -2.8303 -7.2318 29 6 0.8755 -2.1699 -6.0670 30 6 0.6397 -0.7911 -5.9899 31 1 -0.3634 0.5145 0.8896 32 1 -0.3633 0.5132 -0.8903 33 1 -0.3634 -1.0277 0.0005 34 1 1.6977 -1.7556 1.2384 35 1 1.6572 -0.2206 2.1399 36 1 3.9143 0.3409 1.3674 37 1 3.9416 -1.2824 2.1000 38 1 6.6803 -1.4779 -2.6191 39 1 3.9143 0.3408 -1.3673 40 1 3.9417 -1.2847 -2.0983 41 1 1.2754 0.8875 -2.4063 42 1 0.0032 2.9653 -5.7544 43 1 -0.4656 1.8377 -7.8664 44 1 -0.4866 -0.3066 -9.1844 45 1 -0.0578 -2.7057 -9.2598 46 1 0.8051 -3.8934 -7.2897 47 1 1.2552 -2.7054 -5.2095 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000968078945.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:24:24 Heat of formation + Delta-G solvation = 43.270613 kcal Electronic energy + Delta-G solvation = -29653.828910 eV Core-core repulsion = 25801.937493 eV Total energy + Delta-G solvation = -3851.891417 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.12674 -39.30041 -37.57398 -37.39835 -34.35086 -33.15596 -32.95891 -31.23410 -30.93966 -29.97594 -28.67570 -27.31009 -25.09984 -24.01541 -23.60040 -23.01852 -21.94728 -20.97453 -20.31040 -19.39721 -18.08944 -17.46437 -17.09428 -16.76796 -15.91647 -15.59651 -15.11101 -14.85891 -14.59795 -14.49923 -13.82174 -13.81705 -13.67574 -13.61518 -13.31058 -13.22747 -13.05000 -12.83099 -12.38359 -12.19947 -11.98567 -11.86863 -11.62068 -11.53844 -11.48215 -10.83735 -10.72510 -10.60098 -10.41668 -10.23097 -10.10849 -9.98352 -9.91073 -9.79004 -9.47381 -9.21756 -9.18987 -8.54327 -8.40669 -8.13595 -6.57140 -5.71257 -3.20726 0.01951 0.79513 1.68956 2.73176 3.30736 3.38569 3.43514 3.49989 3.51942 4.08665 4.18167 4.44960 4.54921 4.67645 4.70576 4.79976 5.00152 5.13220 5.20702 5.23226 5.31191 5.35030 5.45329 5.56133 5.60907 5.65415 5.74294 5.92695 5.95981 6.02005 6.06997 6.08524 6.15701 6.25879 6.28323 6.42555 6.44059 6.49215 6.51849 6.61234 6.75828 6.78470 6.82727 7.01571 7.02804 7.34824 7.63402 7.80734 7.86709 7.99348 8.53694 8.58940 9.27480 9.89418 10.45725 11.35795 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.011047 B = 0.003782 C = 0.003085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2534.036243 B = 7401.751385 C = 9074.115827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.092 4.092 3 H 0.068 0.932 4 C -0.125 4.125 5 C 0.142 3.858 6 N -0.588 5.588 7 C -0.254 4.254 8 H 0.066 0.934 9 C 0.007 3.993 10 N -0.901 5.901 11 Si 0.904 3.096 12 H -0.277 1.277 13 H -0.288 1.288 14 H -0.290 1.290 15 C 0.166 3.834 16 C 0.121 3.879 17 H 0.084 0.916 18 N -0.690 5.690 19 C 0.567 3.433 20 O -0.521 6.521 21 C 0.137 3.863 22 N -0.460 5.460 23 C 0.075 3.925 24 C -0.140 4.140 25 C -0.030 4.030 26 C -0.125 4.125 27 C -0.092 4.092 28 C -0.128 4.128 29 C -0.084 4.084 30 C -0.074 4.074 31 H 0.050 0.950 32 H 0.050 0.950 33 H 0.051 0.949 34 H 0.060 0.940 35 H 0.055 0.945 36 H 0.018 0.982 37 H 0.055 0.945 38 H 0.253 0.747 39 H 0.018 0.982 40 H 0.099 0.901 41 H 0.403 0.597 42 H 0.158 0.842 43 H 0.140 0.860 44 H 0.130 0.870 45 H 0.125 0.875 46 H 0.128 0.872 47 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.883 5.458 -9.664 19.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.111 4.111 3 H 0.086 0.914 4 C -0.165 4.165 5 C 0.015 3.985 6 N -0.311 5.311 7 C -0.384 4.384 8 H 0.083 0.917 9 C -0.191 4.191 10 N -0.545 5.545 11 Si 0.734 3.266 12 H -0.202 1.202 13 H -0.215 1.215 14 H -0.217 1.217 15 C 0.039 3.961 16 C 0.016 3.984 17 H 0.102 0.898 18 N -0.340 5.340 19 C 0.351 3.649 20 O -0.398 6.398 21 C -0.016 4.016 22 N -0.172 5.172 23 C -0.071 4.071 24 C -0.160 4.160 25 C -0.035 4.035 26 C -0.143 4.143 27 C -0.111 4.111 28 C -0.146 4.146 29 C -0.103 4.103 30 C -0.077 4.077 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.070 0.930 34 H 0.079 0.921 35 H 0.074 0.926 36 H 0.036 0.964 37 H 0.074 0.926 38 H 0.063 0.937 39 H 0.036 0.964 40 H 0.117 0.883 41 H 0.239 0.761 42 H 0.176 0.824 43 H 0.158 0.842 44 H 0.148 0.852 45 H 0.143 0.857 46 H 0.146 0.854 47 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -15.387 5.177 -9.056 18.590 hybrid contribution 0.269 -0.491 -1.172 1.299 sum -15.118 4.686 -10.228 18.845 Atomic orbital electron populations 1.21860 0.96015 1.01510 1.00847 1.21302 0.94581 0.99775 0.95460 0.91378 1.22069 0.98957 1.00000 0.95431 1.20971 0.90787 0.96499 0.90206 1.43934 1.48291 1.39717 0.99152 1.19194 1.07604 1.02391 1.09210 0.91676 1.25154 0.97208 0.97465 0.99317 1.69963 1.36641 1.30744 1.17194 0.86201 0.79969 0.82757 0.77722 1.20192 1.21494 1.21691 1.21148 0.86021 0.97659 0.91226 1.22139 0.98712 0.96348 0.81241 0.89789 1.45932 1.63525 1.14702 1.09795 1.17659 0.78700 0.86071 0.82477 1.90619 1.50213 1.15548 1.83397 1.21606 0.96445 0.89760 0.93743 1.67293 1.10205 1.08510 1.31185 1.22171 0.96387 1.00262 0.88312 1.22086 1.00471 0.93836 0.99608 1.18195 0.97695 0.93777 0.93821 1.20880 1.02173 0.94630 0.96629 1.21069 0.96936 0.94549 0.98584 1.21128 0.99693 1.00744 0.93041 1.22302 0.94682 0.93053 1.00255 1.18729 1.00414 0.95357 0.93170 0.93116 0.93130 0.92976 0.92120 0.92612 0.96406 0.92626 0.93680 0.96428 0.88303 0.76132 0.82430 0.84238 0.85192 0.85682 0.85399 0.80695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.97 9.02 37.16 0.34 -1.64 16 2 C -0.09 -1.51 2.27 -90.58 -0.21 -1.72 16 3 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 4 C -0.12 -2.13 5.36 -26.61 -0.14 -2.27 16 5 C 0.14 2.95 6.51 -3.71 -0.02 2.93 16 6 N -0.59 -14.99 2.99 -172.33 -0.52 -15.50 16 7 C -0.25 -7.14 9.59 -15.06 -0.14 -7.28 16 8 H 0.07 1.79 7.85 -52.48 -0.41 1.38 16 9 C 0.01 0.21 5.07 -17.43 -0.09 0.13 16 10 N -0.90 -27.02 10.97 55.49 0.61 -26.41 16 11 Si 0.90 22.45 29.56 -169.99 -5.03 17.43 16 12 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 13 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 14 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 15 C 0.17 4.10 4.83 -3.72 -0.02 4.08 16 16 C 0.12 2.38 2.06 -67.81 -0.14 2.24 16 17 H 0.08 1.85 7.58 -51.93 -0.39 1.45 16 18 N -0.69 -12.15 4.36 -54.60 -0.24 -12.38 16 19 C 0.57 10.62 7.74 -12.28 -0.10 10.52 16 20 O -0.52 -11.19 13.10 5.33 0.07 -11.12 16 21 C 0.14 2.23 6.81 -82.55 -0.56 1.67 16 22 N -0.46 -6.63 9.52 -9.81 -0.09 -6.73 16 23 C 0.07 0.84 11.06 -18.03 -0.20 0.64 16 24 C -0.14 -1.43 9.88 -39.28 -0.39 -1.82 16 25 C -0.03 -0.37 5.75 -106.82 -0.61 -0.98 16 26 C -0.13 -1.27 9.82 -39.53 -0.39 -1.66 16 27 C -0.09 -0.93 9.95 -39.89 -0.40 -1.32 16 28 C -0.13 -1.54 9.95 -39.87 -0.40 -1.94 16 29 C -0.08 -1.27 9.23 -39.60 -0.37 -1.64 16 30 C -0.07 -1.13 5.76 -106.59 -0.61 -1.74 16 31 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.05 0.66 7.35 -51.93 -0.38 0.27 16 33 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 35 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 37 H 0.06 1.13 7.94 -51.93 -0.41 0.72 16 38 H 0.25 7.37 8.31 -40.82 -0.34 7.03 16 39 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.10 2.86 6.04 -51.93 -0.31 2.54 16 41 H 0.40 6.27 7.66 -40.82 -0.31 5.95 16 42 H 0.16 1.23 8.06 -52.48 -0.42 0.81 16 43 H 0.14 0.93 8.06 -52.48 -0.42 0.50 16 44 H 0.13 0.92 8.06 -52.49 -0.42 0.49 16 45 H 0.13 0.88 8.06 -52.48 -0.42 0.46 16 46 H 0.13 1.27 8.06 -52.48 -0.42 0.85 16 47 H 0.18 3.02 4.96 -52.50 -0.26 2.76 16 LS Contribution 377.49 15.07 5.69 5.69 Total: -1.00 -32.68 377.49 -10.65 -43.33 By element: Atomic # 1 Polarization: 14.19 SS G_CDS: -6.70 Total: 7.49 kcal Atomic # 6 Polarization: 2.65 SS G_CDS: -4.45 Total: -1.80 kcal Atomic # 7 Polarization: -60.79 SS G_CDS: -0.24 Total: -61.02 kcal Atomic # 8 Polarization: -11.19 SS G_CDS: 0.07 Total: -11.12 kcal Atomic # 14 Polarization: 22.45 SS G_CDS: -5.03 Total: 17.43 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -32.68 -10.65 -43.33 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968078945.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.603 kcal (2) G-P(sol) polarization free energy of solvation -32.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.332 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds