Wall clock time and date at job start Tue Mar 31 2020 22:24:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08995 * 109.44738 * 2 1 4 4 C 1.53039 * 109.45749 * 119.96448 * 2 1 3 5 5 C 1.53191 * 109.31150 * 181.38423 * 4 2 1 6 6 N 1.46921 * 108.77663 * 305.36712 * 5 4 2 7 7 C 1.36939 * 120.63014 * 233.58876 * 6 5 4 8 8 H 1.08006 * 119.99803 * 31.07036 * 7 6 5 9 9 C 1.38808 * 120.00365 * 211.07476 * 7 6 5 10 10 N 1.31620 * 119.99596 * 9.70681 * 9 7 6 11 11 Si 1.86800 * 120.00445 * 189.70927 * 9 7 6 12 12 H 1.48498 * 109.46882 * 0.02562 * 11 9 7 13 13 H 1.48501 * 109.47315 * 119.99795 * 11 9 7 14 14 H 1.48502 * 109.46956 * 239.99772 * 11 9 7 15 15 C 1.46923 * 118.74224 * 53.60118 * 6 5 4 16 16 C 1.53039 * 109.45908 * 240.02841 * 2 1 3 17 17 H 1.08998 * 109.52493 * 298.58664 * 16 2 1 18 18 N 1.46504 * 109.49517 * 58.66750 * 16 2 1 19 19 C 1.34777 * 119.99608 * 204.84111 * 18 16 2 20 20 O 1.21544 * 120.00301 * 359.97438 * 19 18 16 21 21 C 1.47954 * 119.99660 * 180.02562 * 19 18 16 22 22 N 1.32193 * 120.15749 * 5.19112 * 21 19 18 23 23 C 1.32029 * 122.67590 * 179.75120 * 22 21 19 24 24 C 1.36685 * 122.02926 * 0.53832 * 23 22 21 25 25 C 1.40534 * 118.85057 * 359.74392 * 24 23 22 26 26 C 1.40323 * 122.22475 * 179.97438 * 25 24 23 27 27 C 1.36208 * 119.44909 * 180.02562 * 26 25 24 28 28 C 1.39380 * 121.00293 * 359.97438 * 27 26 25 29 29 C 1.36256 * 121.08525 * 0.02562 * 28 27 26 30 30 C 1.40094 * 119.53432 * 359.97438 * 29 28 27 31 31 H 1.09002 * 109.47171 * 300.04119 * 1 2 3 32 32 H 1.09000 * 109.47178 * 60.03826 * 1 2 3 33 33 H 1.09000 * 109.47287 * 180.02562 * 1 2 3 34 34 H 1.09002 * 109.50029 * 61.42877 * 4 2 1 35 35 H 1.09004 * 109.49852 * 301.33694 * 4 2 1 36 36 H 1.09003 * 109.58774 * 65.15318 * 5 4 2 37 37 H 1.08995 * 109.58653 * 185.43362 * 5 4 2 38 38 H 0.97006 * 120.00180 * 179.97438 * 10 9 7 39 39 H 1.09006 * 109.58124 * 66.18421 * 15 6 5 40 40 H 1.08999 * 109.58673 * 186.60729 * 15 6 5 41 41 H 0.97001 * 120.00184 * 24.83286 * 18 16 2 42 42 H 1.08005 * 118.98755 * 180.25748 * 23 22 21 43 43 H 1.08007 * 120.57662 * 179.76457 * 24 23 22 44 44 H 1.07998 * 120.27518 * 0.02562 * 26 25 24 45 45 H 1.08007 * 119.49451 * 179.97438 * 27 26 25 46 46 H 1.08004 * 119.46087 * 179.97438 * 28 27 26 47 47 H 1.07990 * 120.23297 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8929 1.0278 0.0000 4 6 2.0398 -0.7207 1.2501 5 6 3.5713 -0.6886 1.2643 6 7 4.0678 -1.2488 0.0001 7 6 4.9764 -2.2734 0.0001 8 1 4.9735 -2.9977 0.8014 9 6 5.9010 -2.3813 -1.0295 10 7 6.0339 -1.4028 -1.8997 11 14 6.9566 -3.9150 -1.1802 12 1 6.6158 -4.8599 -0.0865 13 1 6.7024 -4.5641 -2.4914 14 1 8.3904 -3.5406 -1.0829 15 6 3.5713 -0.6887 -1.2642 16 6 2.0399 -0.7209 -1.2500 17 1 1.6978 -1.7557 -1.2388 18 7 1.5256 -0.0488 -2.4459 19 6 1.4001 -0.7316 -3.6011 20 8 1.7140 -1.9048 -3.6509 21 6 0.8813 -0.0527 -4.8090 22 7 0.6368 1.2462 -4.7874 23 6 0.1782 1.9027 -5.8371 24 6 -0.0873 1.2782 -7.0236 25 6 0.1409 -0.1046 -7.1280 26 6 -0.1075 -0.8167 -8.3112 27 6 0.1335 -2.1568 -8.3495 28 6 0.6233 -2.8303 -7.2318 29 6 0.8755 -2.1699 -6.0670 30 6 0.6397 -0.7911 -5.9899 31 1 -0.3634 0.5145 0.8896 32 1 -0.3633 0.5132 -0.8903 33 1 -0.3634 -1.0277 0.0005 34 1 1.6977 -1.7556 1.2384 35 1 1.6572 -0.2206 2.1399 36 1 3.9143 0.3409 1.3674 37 1 3.9416 -1.2824 2.1000 38 1 6.6803 -1.4779 -2.6191 39 1 3.9143 0.3408 -1.3673 40 1 3.9417 -1.2847 -2.0983 41 1 1.2754 0.8875 -2.4063 42 1 0.0032 2.9653 -5.7544 43 1 -0.4656 1.8377 -7.8664 44 1 -0.4866 -0.3066 -9.1844 45 1 -0.0578 -2.7057 -9.2598 46 1 0.8051 -3.8934 -7.2897 47 1 1.2552 -2.7054 -5.2095 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000968078945.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:24:23 Heat of formation + Delta-G solvation = 22.736093 kcal Electronic energy + Delta-G solvation = -29654.719354 eV Core-core repulsion = 25801.937493 eV Total energy + Delta-G solvation = -3852.781860 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -42.17971 -40.72208 -39.12199 -38.37323 -36.13741 -34.74510 -33.97578 -32.84367 -32.17093 -31.15149 -30.11634 -28.99638 -26.36973 -25.76043 -24.52692 -24.22875 -23.29431 -22.63742 -21.73782 -20.97064 -19.23261 -18.76083 -18.44859 -18.14355 -17.22670 -16.86332 -16.74282 -16.28305 -15.93651 -15.54950 -15.48862 -15.31425 -15.12753 -14.77006 -14.68274 -14.46243 -14.37006 -14.08237 -13.89850 -13.53812 -13.29392 -13.15161 -13.05238 -12.77832 -12.73505 -12.60375 -12.47605 -12.35785 -12.14912 -11.91357 -11.65150 -11.41600 -11.23562 -11.19400 -11.04496 -10.60208 -10.46686 -10.16377 -10.10790 -9.07273 -8.66054 -7.88797 -5.41763 -0.98144 -0.12528 0.69697 1.39794 1.43001 1.52731 1.64272 2.00988 2.22171 2.47354 3.05116 3.10568 3.28233 3.58797 3.66852 3.78326 3.79855 3.82404 3.90620 3.98504 4.14986 4.19344 4.26703 4.42228 4.45121 4.47934 4.57478 4.64704 4.72391 4.73836 4.83445 4.90918 4.96626 5.04596 5.09794 5.11846 5.16029 5.20927 5.27304 5.38584 5.40619 5.42957 5.52631 5.54540 5.60096 5.64895 5.78491 5.90052 6.35218 6.44006 6.78782 7.10437 7.19329 7.82534 8.33474 9.15270 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.011047 B = 0.003782 C = 0.003085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2534.036243 B = 7401.751385 C = 9074.115827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.085 4.085 3 H 0.076 0.924 4 C -0.114 4.114 5 C 0.135 3.865 6 N -0.609 5.609 7 C -0.263 4.263 8 H 0.069 0.931 9 C -0.051 4.051 10 N -0.935 5.935 11 Si 0.966 3.034 12 H -0.261 1.261 13 H -0.297 1.297 14 H -0.285 1.285 15 C 0.181 3.819 16 C 0.138 3.862 17 H 0.055 0.945 18 N -0.684 5.684 19 C 0.560 3.440 20 O -0.563 6.563 21 C 0.092 3.908 22 N -0.464 5.464 23 C 0.054 3.946 24 C -0.105 4.105 25 C -0.053 4.053 26 C -0.106 4.106 27 C -0.099 4.099 28 C -0.115 4.115 29 C -0.134 4.134 30 C -0.088 4.088 31 H 0.080 0.920 32 H 0.055 0.945 33 H 0.045 0.955 34 H 0.052 0.948 35 H 0.098 0.902 36 H 0.020 0.980 37 H 0.058 0.942 38 H 0.246 0.754 39 H -0.006 1.006 40 H 0.047 0.953 41 H 0.414 0.586 42 H 0.197 0.803 43 H 0.191 0.809 44 H 0.176 0.824 45 H 0.165 0.835 46 H 0.141 0.859 47 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.685 7.225 -11.423 23.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.105 4.105 3 H 0.094 0.906 4 C -0.153 4.153 5 C 0.011 3.989 6 N -0.333 5.333 7 C -0.393 4.393 8 H 0.087 0.913 9 C -0.246 4.246 10 N -0.581 5.581 11 Si 0.794 3.206 12 H -0.185 1.185 13 H -0.224 1.224 14 H -0.212 1.212 15 C 0.054 3.946 16 C 0.032 3.968 17 H 0.073 0.927 18 N -0.334 5.334 19 C 0.346 3.654 20 O -0.442 6.442 21 C -0.058 4.058 22 N -0.176 5.176 23 C -0.093 4.093 24 C -0.124 4.124 25 C -0.058 4.058 26 C -0.123 4.123 27 C -0.118 4.118 28 C -0.133 4.133 29 C -0.153 4.153 30 C -0.091 4.091 31 H 0.099 0.901 32 H 0.074 0.926 33 H 0.064 0.936 34 H 0.071 0.929 35 H 0.116 0.884 36 H 0.038 0.962 37 H 0.077 0.923 38 H 0.055 0.945 39 H 0.012 0.988 40 H 0.066 0.934 41 H 0.252 0.748 42 H 0.213 0.787 43 H 0.208 0.792 44 H 0.193 0.807 45 H 0.182 0.818 46 H 0.159 0.841 47 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -18.216 6.959 -10.769 22.276 hybrid contribution 1.081 -0.977 -0.770 1.648 sum -17.135 5.981 -11.539 21.507 Atomic orbital electron populations 1.21763 0.93088 1.01694 1.02619 1.21272 0.96879 0.99326 0.92979 0.90564 1.21966 0.95749 1.00280 0.97350 1.21186 0.93522 0.96188 0.88052 1.44213 1.48475 1.39714 1.00889 1.19563 1.07589 1.03164 1.09031 0.91306 1.25947 0.98934 1.00349 0.99359 1.70157 1.37430 1.32737 1.17771 0.85213 0.78317 0.79586 0.77461 1.18464 1.22418 1.21199 1.20771 0.89295 0.94867 0.89666 1.21650 0.95190 0.95943 0.84033 0.92671 1.45771 1.63386 1.15067 1.09155 1.18254 0.77836 0.85817 0.83477 1.90610 1.51860 1.17462 1.84266 1.21107 1.00569 0.90880 0.93246 1.67194 1.09714 1.07582 1.33127 1.22878 0.96461 1.01866 0.88046 1.22663 0.96608 0.92778 1.00398 1.18618 0.98318 0.95163 0.93727 1.21428 0.99569 0.94594 0.96715 1.21466 0.96352 0.95096 0.98904 1.21417 0.97732 1.01535 0.92656 1.22039 0.98642 0.93863 1.00801 1.18895 1.00755 0.95403 0.94013 0.90092 0.92568 0.93618 0.92903 0.88401 0.96177 0.92320 0.94460 0.98774 0.93414 0.74835 0.78653 0.79186 0.80667 0.81785 0.84115 0.84403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.42 9.02 71.98 0.65 -2.77 16 2 C -0.09 -2.78 2.27 -10.77 -0.02 -2.80 16 3 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 4 C -0.11 -3.76 5.36 30.67 0.16 -3.60 16 5 C 0.14 5.70 6.51 86.36 0.56 6.26 16 6 N -0.61 -32.61 2.99 -699.12 -2.09 -34.70 16 7 C -0.26 -15.44 9.59 84.03 0.81 -14.63 16 8 H 0.07 3.89 7.85 -2.91 -0.02 3.87 16 9 C -0.05 -3.04 5.07 84.86 0.43 -2.61 16 10 N -0.94 -59.81 10.97 21.65 0.24 -59.57 16 11 Si 0.97 48.28 29.56 68.60 2.03 50.31 16 12 H -0.26 -12.18 7.11 99.48 0.71 -11.47 16 13 H -0.30 -15.12 7.11 99.48 0.71 -14.41 16 14 H -0.29 -13.93 7.11 99.48 0.71 -13.23 16 15 C 0.18 9.64 4.83 86.36 0.42 10.05 16 16 C 0.14 5.80 2.06 45.07 0.09 5.90 16 17 H 0.06 2.64 7.58 -2.39 -0.02 2.62 16 18 N -0.68 -25.95 4.36 -444.93 -1.94 -27.89 16 19 C 0.56 23.20 7.74 86.82 0.67 23.87 16 20 O -0.56 -27.41 13.10 -3.85 -0.05 -27.46 16 21 C 0.09 3.20 6.81 42.43 0.29 3.49 16 22 N -0.46 -13.39 9.52 -184.95 -1.76 -15.15 16 23 C 0.05 1.07 11.06 84.30 0.93 2.00 16 24 C -0.11 -1.71 9.88 22.47 0.22 -1.49 16 25 C -0.05 -1.19 5.75 -21.29 -0.12 -1.32 16 26 C -0.11 -1.69 9.82 22.30 0.22 -1.47 16 27 C -0.10 -1.69 9.95 22.07 0.22 -1.48 16 28 C -0.12 -2.80 9.95 22.08 0.22 -2.58 16 29 C -0.13 -4.44 9.23 22.26 0.21 -4.24 16 30 C -0.09 -2.79 5.76 -21.14 -0.12 -2.91 16 31 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 32 H 0.06 1.38 7.35 -2.39 -0.02 1.36 16 33 H 0.04 1.23 8.14 -2.39 -0.02 1.21 16 34 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 35 H 0.10 2.47 8.14 -2.39 -0.02 2.45 16 36 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 37 H 0.06 2.39 7.94 -2.39 -0.02 2.37 16 38 H 0.25 15.34 8.31 -92.70 -0.77 14.57 16 39 H -0.01 -0.32 8.14 -2.38 -0.02 -0.34 16 40 H 0.05 3.03 6.04 -2.39 -0.01 3.01 16 41 H 0.41 13.51 7.66 -92.71 -0.71 12.80 16 42 H 0.20 2.23 8.06 -2.91 -0.02 2.21 16 43 H 0.19 1.16 8.06 -2.91 -0.02 1.14 16 44 H 0.18 1.24 8.06 -2.91 -0.02 1.22 16 45 H 0.16 1.52 8.06 -2.91 -0.02 1.50 16 46 H 0.14 2.86 8.06 -2.91 -0.02 2.83 16 47 H 0.14 5.55 4.96 -3.02 -0.01 5.54 16 Total: -1.00 -81.46 377.49 2.54 -78.92 By element: Atomic # 1 Polarization: 25.59 SS G_CDS: 0.28 Total: 25.87 kcal Atomic # 6 Polarization: 3.84 SS G_CDS: 5.83 Total: 9.67 kcal Atomic # 7 Polarization: -131.76 SS G_CDS: -5.55 Total: -137.31 kcal Atomic # 8 Polarization: -27.41 SS G_CDS: -0.05 Total: -27.46 kcal Atomic # 14 Polarization: 48.28 SS G_CDS: 2.03 Total: 50.31 kcal Total: -81.46 2.54 -78.92 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968078945.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.657 kcal (2) G-P(sol) polarization free energy of solvation -81.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.921 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds