Wall clock time and date at job start Tue Mar 31 2020 22:24:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 109.44781 * 2 1 4 4 C 1.53034 * 109.45895 * 240.03322 * 2 1 3 5 5 C 1.53194 * 109.31061 * 178.61690 * 4 2 1 6 6 N 1.46926 * 108.77727 * 54.63549 * 5 4 2 7 7 C 1.36936 * 120.63328 * 126.41625 * 6 5 4 8 8 H 1.07998 * 119.99738 * 330.60719 * 7 6 5 9 9 C 1.38814 * 120.00158 * 150.60218 * 7 6 5 10 10 N 1.31616 * 119.99740 * 158.55302 * 9 7 6 11 11 Si 1.86803 * 119.99844 * 338.55869 * 9 7 6 12 12 H 1.48499 * 109.46917 * 90.67169 * 11 9 7 13 13 H 1.48498 * 109.46787 * 210.67210 * 11 9 7 14 14 H 1.48492 * 109.47071 * 330.66956 * 11 9 7 15 15 C 1.46998 * 118.74989 * 306.38705 * 6 5 4 16 16 C 1.53040 * 109.45850 * 119.96544 * 2 1 3 17 17 H 1.09012 * 109.49690 * 301.36684 * 16 2 1 18 18 N 1.46499 * 109.49923 * 61.43181 * 16 2 1 19 19 C 1.34782 * 119.99928 * 204.93368 * 18 16 2 20 20 O 1.21546 * 119.99826 * 0.02562 * 19 18 16 21 21 C 1.47942 * 120.00064 * 180.02562 * 19 18 16 22 22 N 1.32204 * 120.15743 * 5.55615 * 21 19 18 23 23 C 1.32026 * 122.68281 * 180.02562 * 22 21 19 24 24 C 1.36691 * 122.02560 * 0.05420 * 23 22 21 25 25 C 1.40526 * 118.84882 * 359.90523 * 24 23 22 26 26 C 1.40328 * 122.22115 * 180.08314 * 25 24 23 27 27 C 1.36205 * 119.44864 * 180.02562 * 26 25 24 28 28 C 1.39379 * 121.00595 * 0.02562 * 27 26 25 29 29 C 1.36256 * 121.08210 * 359.96900 * 28 27 26 30 30 C 1.40093 * 119.53525 * 0.03038 * 29 28 27 31 31 H 1.09002 * 109.47309 * 300.03380 * 1 2 3 32 32 H 1.08995 * 109.47411 * 60.03722 * 1 2 3 33 33 H 1.08998 * 109.46930 * 180.02562 * 1 2 3 34 34 H 1.09004 * 109.49666 * 298.56033 * 4 2 1 35 35 H 1.08989 * 109.50337 * 58.65862 * 4 2 1 36 36 H 1.08998 * 109.58535 * 174.42184 * 5 4 2 37 37 H 1.08996 * 109.58452 * 294.69990 * 5 4 2 38 38 H 0.97007 * 119.99798 * 180.02562 * 10 9 7 39 39 H 1.08997 * 109.58450 * 293.82986 * 15 6 5 40 40 H 1.09003 * 109.62180 * 173.38420 * 15 6 5 41 41 H 0.96995 * 120.00090 * 24.93629 * 18 16 2 42 42 H 1.08001 * 118.98622 * 180.02562 * 23 22 21 43 43 H 1.08006 * 120.57227 * 180.02562 * 24 23 22 44 44 H 1.07995 * 120.27085 * 0.02562 * 26 25 24 45 45 H 1.08001 * 119.49164 * 180.02562 * 27 26 25 46 46 H 1.08001 * 119.45782 * 180.02562 * 28 27 26 47 47 H 1.08003 * 120.22985 * 179.75200 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8930 1.0278 0.0000 4 6 2.0398 -0.7207 -1.2500 5 6 3.5714 -0.6886 -1.2641 6 7 4.0679 -1.2489 0.0001 7 6 4.9764 -2.2734 0.0002 8 1 4.9914 -2.9818 -0.8148 9 6 5.8783 -2.4013 1.0477 10 7 6.4489 -3.5630 1.2865 11 14 6.2817 -0.9246 2.1183 12 1 5.3492 -0.8811 3.2732 13 1 7.6773 -1.0384 2.6129 14 1 6.1394 0.3193 1.3199 15 6 3.5714 -0.6885 1.2651 16 6 2.0399 -0.7207 1.2501 17 1 1.6567 -0.2209 2.1399 18 7 1.5801 -2.1116 1.2343 19 6 1.4528 -2.7924 2.3906 20 8 1.7190 -2.2523 3.4464 21 6 0.9890 -4.1972 2.3747 22 7 0.8038 -4.8225 1.2247 23 6 0.3911 -6.0745 1.1523 24 6 0.1239 -6.8154 2.2695 25 6 0.2967 -6.2241 3.5325 26 6 0.0449 -6.9196 4.7250 27 6 0.2308 -6.2909 5.9189 28 6 0.6664 -4.9681 5.9737 29 6 0.9202 -4.2634 4.8354 30 6 0.7404 -4.8768 3.5888 31 1 -0.3634 0.5144 0.8897 32 1 -0.3634 0.5132 -0.8903 33 1 -0.3633 -1.0277 0.0005 34 1 1.6979 -1.7557 -1.2382 35 1 1.6572 -0.2209 -2.1397 36 1 3.9417 -1.2845 -2.0983 37 1 3.9143 0.3406 -1.3699 38 1 7.0789 -3.6525 2.0188 39 1 3.9143 0.3410 1.3682 40 1 3.9413 -1.2843 2.0996 41 1 1.3673 -2.5426 0.3918 42 1 0.2601 -6.5270 0.1805 43 1 -0.2123 -7.8381 2.1830 44 1 -0.2933 -7.9448 4.6963 45 1 0.0377 -6.8257 6.8372 46 1 0.8059 -4.4941 6.9340 47 1 1.2534 -3.2377 4.8938 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000968078948.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:24:28 Heat of formation + Delta-G solvation = 50.547218 kcal Electronic energy + Delta-G solvation = -30424.386947 eV Core-core repulsion = 26572.811067 eV Total energy + Delta-G solvation = -3851.575880 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.01793 -39.51648 -37.70427 -37.29370 -34.27627 -33.00574 -32.81818 -31.33639 -31.09990 -30.09293 -29.20113 -27.54799 -25.03867 -23.85497 -23.48477 -23.08010 -22.32980 -21.18256 -20.73653 -18.87396 -18.21226 -17.37434 -17.06925 -16.74303 -15.83485 -15.44285 -15.31625 -14.94585 -14.65621 -14.50712 -14.00562 -13.91819 -13.69595 -13.49552 -13.38939 -13.33400 -13.11607 -12.90934 -12.60500 -12.11813 -12.07535 -11.98005 -11.80109 -11.63560 -11.46543 -11.35628 -11.09608 -10.56901 -10.52182 -10.25987 -10.11028 -9.88715 -9.79645 -9.77579 -9.41197 -9.17182 -9.08931 -8.70314 -8.39820 -8.01644 -6.87876 -5.89788 -3.25571 0.15312 0.92957 1.79907 2.85010 3.35603 3.43333 3.50934 3.54003 3.56164 4.20930 4.34064 4.57241 4.60721 4.79554 4.81552 4.91499 4.98448 5.03038 5.11791 5.15965 5.23484 5.24267 5.32279 5.47596 5.48875 5.73180 5.77686 5.78351 5.84342 5.90007 6.00847 6.03604 6.10698 6.11463 6.14240 6.25485 6.34451 6.36682 6.40515 6.51399 6.54275 6.65531 6.67614 6.74398 6.85252 6.89056 7.08379 7.76070 8.02426 8.07999 8.38900 8.62033 8.99396 9.78300 10.15770 11.26004 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.011112 B = 0.004564 C = 0.003994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2519.267179 B = 6133.739142 C = 7009.280462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.094 4.094 3 H 0.080 0.920 4 C -0.132 4.132 5 C 0.146 3.854 6 N -0.600 5.600 7 C -0.257 4.257 8 H 0.083 0.917 9 C 0.029 3.971 10 N -0.905 5.905 11 Si 0.873 3.127 12 H -0.283 1.283 13 H -0.303 1.303 14 H -0.272 1.272 15 C 0.115 3.885 16 C 0.131 3.869 17 H 0.083 0.917 18 N -0.671 5.671 19 C 0.574 3.426 20 O -0.540 6.540 21 C 0.139 3.861 22 N -0.452 5.452 23 C 0.079 3.921 24 C -0.141 4.141 25 C -0.029 4.029 26 C -0.123 4.123 27 C -0.095 4.095 28 C -0.130 4.130 29 C -0.084 4.084 30 C -0.073 4.073 31 H 0.051 0.949 32 H 0.053 0.947 33 H 0.053 0.947 34 H 0.061 0.939 35 H 0.059 0.941 36 H 0.063 0.937 37 H 0.022 0.978 38 H 0.261 0.739 39 H 0.032 0.968 40 H 0.081 0.919 41 H 0.410 0.590 42 H 0.159 0.841 43 H 0.140 0.860 44 H 0.130 0.870 45 H 0.124 0.876 46 H 0.126 0.874 47 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.175 -2.402 2.679 17.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.113 4.113 3 H 0.098 0.902 4 C -0.172 4.172 5 C 0.020 3.980 6 N -0.324 5.324 7 C -0.386 4.386 8 H 0.100 0.900 9 C -0.170 4.170 10 N -0.547 5.547 11 Si 0.703 3.297 12 H -0.211 1.211 13 H -0.231 1.231 14 H -0.197 1.197 15 C -0.012 4.012 16 C 0.025 3.975 17 H 0.101 0.899 18 N -0.321 5.321 19 C 0.359 3.641 20 O -0.418 6.418 21 C -0.014 4.014 22 N -0.164 5.164 23 C -0.067 4.067 24 C -0.161 4.161 25 C -0.034 4.034 26 C -0.141 4.141 27 C -0.114 4.114 28 C -0.148 4.148 29 C -0.103 4.103 30 C -0.076 4.076 31 H 0.070 0.930 32 H 0.072 0.928 33 H 0.073 0.927 34 H 0.080 0.920 35 H 0.078 0.922 36 H 0.082 0.918 37 H 0.040 0.960 38 H 0.071 0.929 39 H 0.050 0.950 40 H 0.099 0.901 41 H 0.248 0.752 42 H 0.176 0.824 43 H 0.158 0.842 44 H 0.148 0.852 45 H 0.142 0.858 46 H 0.144 0.856 47 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -16.698 -1.738 2.616 16.991 hybrid contribution 0.223 -0.208 1.031 1.075 sum -16.475 -1.946 3.646 16.986 Atomic orbital electron populations 1.21847 0.95494 1.01748 1.01155 1.21310 0.95114 0.99751 0.95088 0.90172 1.22096 0.98825 1.00104 0.96128 1.20960 0.90914 0.96599 0.89560 1.44301 1.48695 1.40307 0.99065 1.18804 1.08568 1.02085 1.09100 0.89988 1.25287 0.97244 0.96436 0.98076 1.69851 1.31660 1.22289 1.30904 0.87051 0.76619 0.85214 0.80806 1.21055 1.23142 1.19685 1.21790 0.90963 0.97475 0.90957 1.21614 0.96998 0.80987 0.97945 0.89906 1.45660 1.64255 1.13317 1.08830 1.17623 0.77911 0.84145 0.84470 1.90543 1.52041 1.68839 1.30404 1.21448 0.96575 0.94814 0.88517 1.67288 1.09686 1.11021 1.28377 1.22183 0.96059 0.89502 0.98994 1.22083 1.00601 1.01052 0.92324 1.18176 0.97846 0.92958 0.94440 1.20877 1.02066 0.99793 0.91369 1.21029 0.97419 0.95052 0.97895 1.21080 1.00177 0.94539 0.99030 1.22238 0.94576 1.03093 0.90401 1.18717 1.00558 0.93765 0.94602 0.93006 0.92837 0.92742 0.92014 0.92242 0.91829 0.95961 0.92911 0.95037 0.90054 0.75204 0.82411 0.84238 0.85218 0.85780 0.85591 0.80939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.76 9.05 37.16 0.34 -1.43 16 2 C -0.09 -1.37 2.48 -90.58 -0.22 -1.59 16 3 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 4 C -0.13 -2.00 5.20 -26.61 -0.14 -2.14 16 5 C 0.15 2.75 6.52 -3.71 -0.02 2.73 16 6 N -0.60 -14.04 2.65 -172.26 -0.46 -14.50 16 7 C -0.26 -7.22 10.00 -15.06 -0.15 -7.37 16 8 H 0.08 2.47 8.06 -52.49 -0.42 2.04 16 9 C 0.03 0.86 5.19 -17.43 -0.09 0.77 16 10 N -0.90 -28.51 13.97 55.49 0.78 -27.73 16 11 Si 0.87 23.25 24.42 -169.99 -4.15 19.09 16 12 H -0.28 -7.55 6.57 56.52 0.37 -7.18 16 13 H -0.30 -8.19 7.11 56.52 0.40 -7.79 16 14 H -0.27 -7.02 6.91 56.52 0.39 -6.63 16 15 C 0.11 2.57 3.83 -3.67 -0.01 2.55 16 16 C 0.13 2.36 2.24 -67.81 -0.15 2.21 16 17 H 0.08 1.47 7.58 -51.92 -0.39 1.08 16 18 N -0.67 -12.41 4.24 -54.60 -0.23 -12.64 16 19 C 0.57 11.37 7.74 -12.28 -0.10 11.27 16 20 O -0.54 -11.49 13.10 5.33 0.07 -11.42 16 21 C 0.14 2.54 6.81 -82.55 -0.56 1.98 16 22 N -0.45 -7.68 9.52 -9.81 -0.09 -7.77 16 23 C 0.08 1.07 11.06 -18.03 -0.20 0.87 16 24 C -0.14 -1.72 9.88 -39.28 -0.39 -2.10 16 25 C -0.03 -0.41 5.75 -106.83 -0.61 -1.02 16 26 C -0.12 -1.41 9.82 -39.53 -0.39 -1.80 16 27 C -0.09 -1.05 9.95 -39.89 -0.40 -1.44 16 28 C -0.13 -1.67 9.95 -39.87 -0.40 -2.06 16 29 C -0.08 -1.35 9.23 -39.60 -0.37 -1.72 16 30 C -0.07 -1.24 5.76 -106.60 -0.61 -1.85 16 31 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 32 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.05 0.68 7.54 -51.93 -0.39 0.29 16 34 H 0.06 0.98 6.40 -51.93 -0.33 0.65 16 35 H 0.06 0.75 8.14 -51.94 -0.42 0.33 16 36 H 0.06 1.21 7.93 -51.93 -0.41 0.80 16 37 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.26 7.91 8.31 -40.82 -0.34 7.57 16 39 H 0.03 0.69 7.22 -51.93 -0.37 0.32 16 40 H 0.08 2.12 4.77 -51.93 -0.25 1.87 16 41 H 0.41 7.31 6.00 -40.82 -0.25 7.07 16 42 H 0.16 1.62 8.06 -52.49 -0.42 1.20 16 43 H 0.14 1.17 8.06 -52.48 -0.42 0.75 16 44 H 0.13 1.08 8.06 -52.49 -0.42 0.66 16 45 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 46 H 0.13 1.31 8.06 -52.49 -0.42 0.88 16 47 H 0.17 3.03 4.96 -52.49 -0.26 2.77 16 LS Contribution 368.73 15.07 5.56 5.56 Total: -1.00 -33.82 368.73 -9.50 -43.31 By element: Atomic # 1 Polarization: 14.74 SS G_CDS: -6.49 Total: 8.26 kcal Atomic # 6 Polarization: 2.32 SS G_CDS: -4.48 Total: -2.16 kcal Atomic # 7 Polarization: -62.63 SS G_CDS: -0.01 Total: -62.64 kcal Atomic # 8 Polarization: -11.49 SS G_CDS: 0.07 Total: -11.42 kcal Atomic # 14 Polarization: 23.25 SS G_CDS: -4.15 Total: 19.09 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -33.82 -9.50 -43.31 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968078948.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.858 kcal (2) G-P(sol) polarization free energy of solvation -33.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.310 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds