Wall clock time and date at job start Tue Mar 31 2020 22:24:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 109.44781 * 2 1 4 4 C 1.53034 * 109.45895 * 240.03322 * 2 1 3 5 5 C 1.53194 * 109.31061 * 178.61690 * 4 2 1 6 6 N 1.46926 * 108.77727 * 54.63549 * 5 4 2 7 7 C 1.36936 * 120.63328 * 126.41625 * 6 5 4 8 8 H 1.07998 * 119.99738 * 330.60719 * 7 6 5 9 9 C 1.38814 * 120.00158 * 150.60218 * 7 6 5 10 10 N 1.31616 * 119.99740 * 158.55302 * 9 7 6 11 11 Si 1.86803 * 119.99844 * 338.55869 * 9 7 6 12 12 H 1.48499 * 109.46917 * 90.67169 * 11 9 7 13 13 H 1.48498 * 109.46787 * 210.67210 * 11 9 7 14 14 H 1.48492 * 109.47071 * 330.66956 * 11 9 7 15 15 C 1.46998 * 118.74989 * 306.38705 * 6 5 4 16 16 C 1.53040 * 109.45850 * 119.96544 * 2 1 3 17 17 H 1.09012 * 109.49690 * 301.36684 * 16 2 1 18 18 N 1.46499 * 109.49923 * 61.43181 * 16 2 1 19 19 C 1.34782 * 119.99928 * 204.93368 * 18 16 2 20 20 O 1.21546 * 119.99826 * 0.02562 * 19 18 16 21 21 C 1.47942 * 120.00064 * 180.02562 * 19 18 16 22 22 N 1.32204 * 120.15743 * 5.55615 * 21 19 18 23 23 C 1.32026 * 122.68281 * 180.02562 * 22 21 19 24 24 C 1.36691 * 122.02560 * 0.05420 * 23 22 21 25 25 C 1.40526 * 118.84882 * 359.90523 * 24 23 22 26 26 C 1.40328 * 122.22115 * 180.08314 * 25 24 23 27 27 C 1.36205 * 119.44864 * 180.02562 * 26 25 24 28 28 C 1.39379 * 121.00595 * 0.02562 * 27 26 25 29 29 C 1.36256 * 121.08210 * 359.96900 * 28 27 26 30 30 C 1.40093 * 119.53525 * 0.03038 * 29 28 27 31 31 H 1.09002 * 109.47309 * 300.03380 * 1 2 3 32 32 H 1.08995 * 109.47411 * 60.03722 * 1 2 3 33 33 H 1.08998 * 109.46930 * 180.02562 * 1 2 3 34 34 H 1.09004 * 109.49666 * 298.56033 * 4 2 1 35 35 H 1.08989 * 109.50337 * 58.65862 * 4 2 1 36 36 H 1.08998 * 109.58535 * 174.42184 * 5 4 2 37 37 H 1.08996 * 109.58452 * 294.69990 * 5 4 2 38 38 H 0.97007 * 119.99798 * 180.02562 * 10 9 7 39 39 H 1.08997 * 109.58450 * 293.82986 * 15 6 5 40 40 H 1.09003 * 109.62180 * 173.38420 * 15 6 5 41 41 H 0.96995 * 120.00090 * 24.93629 * 18 16 2 42 42 H 1.08001 * 118.98622 * 180.02562 * 23 22 21 43 43 H 1.08006 * 120.57227 * 180.02562 * 24 23 22 44 44 H 1.07995 * 120.27085 * 0.02562 * 26 25 24 45 45 H 1.08001 * 119.49164 * 180.02562 * 27 26 25 46 46 H 1.08001 * 119.45782 * 180.02562 * 28 27 26 47 47 H 1.08003 * 120.22985 * 179.75200 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8930 1.0278 0.0000 4 6 2.0398 -0.7207 -1.2500 5 6 3.5714 -0.6886 -1.2641 6 7 4.0679 -1.2489 0.0001 7 6 4.9764 -2.2734 0.0002 8 1 4.9914 -2.9818 -0.8148 9 6 5.8783 -2.4013 1.0477 10 7 6.4489 -3.5630 1.2865 11 14 6.2817 -0.9246 2.1183 12 1 5.3492 -0.8811 3.2732 13 1 7.6773 -1.0384 2.6129 14 1 6.1394 0.3193 1.3199 15 6 3.5714 -0.6885 1.2651 16 6 2.0399 -0.7207 1.2501 17 1 1.6567 -0.2209 2.1399 18 7 1.5801 -2.1116 1.2343 19 6 1.4528 -2.7924 2.3906 20 8 1.7190 -2.2523 3.4464 21 6 0.9890 -4.1972 2.3747 22 7 0.8038 -4.8225 1.2247 23 6 0.3911 -6.0745 1.1523 24 6 0.1239 -6.8154 2.2695 25 6 0.2967 -6.2241 3.5325 26 6 0.0449 -6.9196 4.7250 27 6 0.2308 -6.2909 5.9189 28 6 0.6664 -4.9681 5.9737 29 6 0.9202 -4.2634 4.8354 30 6 0.7404 -4.8768 3.5888 31 1 -0.3634 0.5144 0.8897 32 1 -0.3634 0.5132 -0.8903 33 1 -0.3633 -1.0277 0.0005 34 1 1.6979 -1.7557 -1.2382 35 1 1.6572 -0.2209 -2.1397 36 1 3.9417 -1.2845 -2.0983 37 1 3.9143 0.3406 -1.3699 38 1 7.0789 -3.6525 2.0188 39 1 3.9143 0.3410 1.3682 40 1 3.9413 -1.2843 2.0996 41 1 1.3673 -2.5426 0.3918 42 1 0.2601 -6.5270 0.1805 43 1 -0.2123 -7.8381 2.1830 44 1 -0.2933 -7.9448 4.6963 45 1 0.0377 -6.8257 6.8372 46 1 0.8059 -4.4941 6.9340 47 1 1.2534 -3.2377 4.8938 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000968078948.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:24:26 Heat of formation + Delta-G solvation = 28.103106 kcal Electronic energy + Delta-G solvation = -30425.360196 eV Core-core repulsion = 26572.811067 eV Total energy + Delta-G solvation = -3852.549129 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -42.18012 -40.90835 -39.18596 -38.35866 -36.05168 -34.45450 -33.95543 -33.31801 -32.15727 -31.44649 -30.41523 -29.11670 -26.33007 -25.58084 -24.55927 -24.39083 -23.57239 -22.83969 -22.01080 -20.41599 -19.41981 -18.80570 -18.37704 -18.17730 -17.30729 -16.90966 -16.78361 -16.34901 -16.13509 -15.58977 -15.52064 -15.29884 -15.16294 -14.87699 -14.72226 -14.67672 -14.42289 -14.31225 -13.91044 -13.75266 -13.64508 -13.15946 -13.14038 -12.91389 -12.73971 -12.56219 -12.47805 -12.42932 -12.21884 -11.83751 -11.69729 -11.37480 -11.19788 -11.15510 -11.05349 -10.75322 -10.45392 -10.14689 -10.06450 -9.06997 -8.85633 -8.20702 -5.49513 -0.95975 -0.11219 0.70829 1.27049 1.30351 1.39743 1.64164 2.07649 2.26427 2.38527 3.01207 3.06393 3.16656 3.35560 3.60377 3.69174 3.77383 3.81858 3.91621 3.92476 4.01042 4.19631 4.26864 4.31352 4.41936 4.46081 4.51037 4.62114 4.63815 4.68912 4.74386 4.84039 4.87058 4.87776 5.00477 5.06258 5.09773 5.12178 5.18343 5.20536 5.39084 5.40413 5.44325 5.52292 5.59575 5.67245 5.86933 5.91355 6.10555 6.43018 6.80709 6.91091 7.17463 7.61667 8.03147 8.99134 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.011112 B = 0.004564 C = 0.003994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2519.267179 B = 6133.739142 C = 7009.280462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.086 4.086 3 H 0.096 0.904 4 C -0.121 4.121 5 C 0.138 3.862 6 N -0.611 5.611 7 C -0.232 4.232 8 H 0.053 0.947 9 C -0.030 4.030 10 N -0.953 5.953 11 Si 0.932 3.068 12 H -0.293 1.293 13 H -0.309 1.309 14 H -0.254 1.254 15 C 0.114 3.886 16 C 0.134 3.866 17 H 0.083 0.917 18 N -0.669 5.669 19 C 0.563 3.437 20 O -0.568 6.568 21 C 0.090 3.910 22 N -0.467 5.467 23 C 0.052 3.948 24 C -0.110 4.110 25 C -0.054 4.054 26 C -0.108 4.108 27 C -0.099 4.099 28 C -0.115 4.115 29 C -0.131 4.131 30 C -0.091 4.091 31 H 0.055 0.945 32 H 0.080 0.920 33 H 0.045 0.955 34 H 0.051 0.949 35 H 0.099 0.901 36 H 0.057 0.943 37 H 0.040 0.960 38 H 0.257 0.743 39 H 0.041 0.959 40 H 0.037 0.963 41 H 0.412 0.588 42 H 0.190 0.810 43 H 0.189 0.811 44 H 0.174 0.826 45 H 0.166 0.834 46 H 0.146 0.854 47 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.108 -3.178 2.447 20.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.105 4.105 3 H 0.115 0.885 4 C -0.160 4.160 5 C 0.014 3.986 6 N -0.335 5.335 7 C -0.362 4.362 8 H 0.070 0.930 9 C -0.225 4.225 10 N -0.600 5.600 11 Si 0.762 3.238 12 H -0.221 1.221 13 H -0.238 1.238 14 H -0.178 1.178 15 C -0.013 4.013 16 C 0.028 3.972 17 H 0.101 0.899 18 N -0.318 5.318 19 C 0.349 3.651 20 O -0.449 6.449 21 C -0.060 4.060 22 N -0.179 5.179 23 C -0.095 4.095 24 C -0.129 4.129 25 C -0.059 4.059 26 C -0.125 4.125 27 C -0.117 4.117 28 C -0.133 4.133 29 C -0.150 4.150 30 C -0.094 4.094 31 H 0.074 0.926 32 H 0.099 0.901 33 H 0.065 0.935 34 H 0.070 0.930 35 H 0.117 0.883 36 H 0.075 0.925 37 H 0.058 0.942 38 H 0.065 0.935 39 H 0.058 0.942 40 H 0.055 0.945 41 H 0.250 0.750 42 H 0.207 0.793 43 H 0.207 0.793 44 H 0.191 0.809 45 H 0.184 0.816 46 H 0.164 0.836 47 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -19.668 -2.452 2.348 19.959 hybrid contribution 1.025 -0.127 1.105 1.512 sum -18.644 -2.579 3.453 19.135 Atomic orbital electron populations 1.21763 0.93112 1.01763 1.02712 1.21316 0.96959 0.99701 0.92506 0.88538 1.21994 0.95633 1.00273 0.98090 1.21211 0.93547 0.96883 0.86927 1.44394 1.48120 1.39786 1.01233 1.18743 1.08160 1.02078 1.07189 0.92978 1.25836 0.98232 0.98339 1.00105 1.69975 1.33547 1.24132 1.32334 0.86096 0.75422 0.83064 0.79227 1.22069 1.23812 1.17820 1.21729 0.94011 0.96622 0.88913 1.21573 0.93882 0.81491 1.00282 0.89900 1.45666 1.64055 1.13458 1.08644 1.18119 0.77441 0.85218 0.84325 1.90521 1.53270 1.69841 1.31273 1.21246 1.00357 0.94493 0.89887 1.67185 1.09702 1.12832 1.28208 1.22811 0.96735 0.88722 1.01236 1.22632 0.96882 1.02561 0.90820 1.18618 0.98555 0.92079 0.96662 1.21413 0.99715 1.01285 0.90134 1.21478 0.96445 0.94096 0.99726 1.21435 0.97715 0.95490 0.98660 1.22056 0.98382 1.02743 0.91858 1.18953 1.00948 0.95380 0.94165 0.92593 0.90116 0.93543 0.93029 0.88267 0.92466 0.94200 0.93453 0.94178 0.94453 0.75002 0.79294 0.79339 0.80876 0.81615 0.83581 0.83840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.95 9.05 71.98 0.65 -2.30 16 2 C -0.09 -2.33 2.48 -10.77 -0.03 -2.36 16 3 H 0.10 2.37 8.14 -2.39 -0.02 2.35 16 4 C -0.12 -3.39 5.20 30.67 0.16 -3.23 16 5 C 0.14 5.07 6.52 86.36 0.56 5.63 16 6 N -0.61 -29.00 2.65 -698.92 -1.85 -30.85 16 7 C -0.23 -13.52 10.00 84.03 0.84 -12.68 16 8 H 0.05 3.30 8.06 -2.91 -0.02 3.28 16 9 C -0.03 -1.88 5.19 84.86 0.44 -1.44 16 10 N -0.95 -63.31 13.97 21.65 0.30 -63.01 16 11 Si 0.93 50.46 24.42 68.60 1.68 52.13 16 12 H -0.29 -16.14 6.57 99.48 0.65 -15.49 16 13 H -0.31 -16.84 7.11 99.48 0.71 -16.14 16 14 H -0.25 -12.81 6.91 99.48 0.69 -12.12 16 15 C 0.11 5.18 3.83 86.35 0.33 5.51 16 16 C 0.13 4.91 2.24 45.07 0.10 5.01 16 17 H 0.08 3.03 7.58 -2.38 -0.02 3.01 16 18 N -0.67 -25.91 4.24 -444.92 -1.89 -27.79 16 19 C 0.56 24.08 7.74 86.81 0.67 24.75 16 20 O -0.57 -26.54 13.10 -3.86 -0.05 -26.59 16 21 C 0.09 3.53 6.81 42.43 0.29 3.82 16 22 N -0.47 -16.40 9.52 -184.95 -1.76 -18.16 16 23 C 0.05 1.34 11.06 84.30 0.93 2.28 16 24 C -0.11 -2.36 9.88 22.47 0.22 -2.14 16 25 C -0.05 -1.43 5.75 -21.29 -0.12 -1.55 16 26 C -0.11 -2.05 9.82 22.30 0.22 -1.84 16 27 C -0.10 -1.85 9.95 22.07 0.22 -1.63 16 28 C -0.12 -2.88 9.95 22.08 0.22 -2.66 16 29 C -0.13 -4.48 9.23 22.26 0.21 -4.28 16 30 C -0.09 -3.21 5.76 -21.14 -0.12 -3.34 16 31 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 32 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 33 H 0.05 1.09 7.54 -2.39 -0.02 1.07 16 34 H 0.05 1.57 6.40 -2.39 -0.02 1.55 16 35 H 0.10 2.08 8.14 -2.39 -0.02 2.06 16 36 H 0.06 2.14 7.93 -2.39 -0.02 2.13 16 37 H 0.04 1.35 8.14 -2.39 -0.02 1.34 16 38 H 0.26 16.43 8.31 -92.70 -0.77 15.66 16 39 H 0.04 1.75 7.22 -2.39 -0.02 1.73 16 40 H 0.04 2.04 4.77 -2.39 -0.01 2.03 16 41 H 0.41 15.28 6.00 -92.71 -0.56 14.72 16 42 H 0.19 3.48 8.06 -2.91 -0.02 3.46 16 43 H 0.19 2.11 8.06 -2.91 -0.02 2.08 16 44 H 0.17 1.78 8.06 -2.91 -0.02 1.75 16 45 H 0.17 1.75 8.06 -2.91 -0.02 1.73 16 46 H 0.15 2.90 8.06 -2.91 -0.02 2.87 16 47 H 0.14 5.67 4.96 -3.00 -0.01 5.65 16 Total: -1.00 -82.06 368.73 2.59 -79.47 By element: Atomic # 1 Polarization: 26.87 SS G_CDS: 0.37 Total: 27.24 kcal Atomic # 6 Polarization: 1.76 SS G_CDS: 5.79 Total: 7.56 kcal Atomic # 7 Polarization: -134.61 SS G_CDS: -5.20 Total: -139.81 kcal Atomic # 8 Polarization: -26.54 SS G_CDS: -0.05 Total: -26.59 kcal Atomic # 14 Polarization: 50.46 SS G_CDS: 1.68 Total: 52.13 kcal Total: -82.06 2.59 -79.47 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968078948.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.575 kcal (2) G-P(sol) polarization free energy of solvation -82.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.472 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds