Wall clock time and date at job start Tue Mar 31 2020 22:24:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.45108 * 2 1 4 4 C 1.53033 * 109.46080 * 240.03322 * 2 1 3 5 5 C 1.53194 * 109.31362 * 178.61862 * 4 2 1 6 6 N 1.46924 * 108.77722 * 54.63094 * 5 4 2 7 7 C 1.36939 * 120.62668 * 126.41477 * 6 5 4 8 8 H 1.08002 * 119.99837 * 207.67188 * 7 6 5 9 9 C 1.38814 * 120.00348 * 27.67325 * 7 6 5 10 10 N 1.31612 * 119.99931 * 17.36426 * 9 7 6 11 11 Si 1.86801 * 120.00047 * 197.36621 * 9 7 6 12 12 H 1.48501 * 109.47104 * 0.02562 * 11 9 7 13 13 H 1.48500 * 109.47119 * 119.99713 * 11 9 7 14 14 H 1.48497 * 109.46922 * 239.99906 * 11 9 7 15 15 C 1.46916 * 118.74104 * 306.39624 * 6 5 4 16 16 C 1.53046 * 109.45504 * 119.96466 * 2 1 3 17 17 H 1.08994 * 109.52502 * 61.42401 * 16 2 1 18 18 N 1.46494 * 109.49967 * 301.33261 * 16 2 1 19 19 C 1.34777 * 120.00022 * 155.16043 * 18 16 2 20 20 O 1.21567 * 119.99913 * 0.02562 * 19 18 16 21 21 C 1.47765 * 120.00277 * 180.02562 * 19 18 16 22 22 C 1.40629 * 119.80211 * 359.72479 * 21 19 18 23 23 C 1.35700 * 120.92076 * 179.68341 * 22 21 19 24 24 C 1.40756 * 120.11114 * 0.61792 * 23 22 21 25 25 N 1.33652 * 120.83153 * 179.64633 * 24 23 22 26 26 C 1.31121 * 121.39282 * 180.02562 * 25 24 23 27 27 C 1.39316 * 121.76979 * 359.97438 * 26 25 24 28 28 C 1.36576 * 119.90482 * 0.02562 * 27 26 25 29 29 C 1.40893 * 118.16228 * 0.02562 * 28 27 26 30 30 C 1.38548 * 119.80490 * 180.02562 * 21 19 18 31 31 H 1.08999 * 109.47142 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.47093 * 299.97184 * 1 2 3 33 33 H 1.09007 * 109.46855 * 59.96271 * 1 2 3 34 34 H 1.08999 * 109.50141 * 58.66605 * 4 2 1 35 35 H 1.09003 * 109.50007 * 298.56898 * 4 2 1 36 36 H 1.09007 * 109.58883 * 174.42340 * 5 4 2 37 37 H 1.08999 * 109.58260 * 294.69938 * 5 4 2 38 38 H 0.97000 * 120.00190 * 179.97438 * 10 9 7 39 39 H 1.08999 * 109.59316 * 173.39424 * 15 6 5 40 40 H 1.09007 * 109.58801 * 293.81953 * 15 6 5 41 41 H 0.96997 * 119.99970 * 335.16763 * 18 16 2 42 42 H 1.08004 * 119.53821 * 0.02562 * 22 21 19 43 43 H 1.07999 * 119.94803 * 180.28194 * 23 22 21 44 44 H 1.07995 * 119.11113 * 179.97438 * 26 25 24 45 45 H 1.07996 * 120.04510 * 180.02562 * 27 26 25 46 46 H 1.08000 * 120.92193 * 179.97438 * 28 27 26 47 47 H 1.07998 * 120.29981 * 0.02562 * 30 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8930 1.0278 0.0000 4 6 2.0398 -0.7207 -1.2500 5 6 3.5714 -0.6886 -1.2641 6 7 4.0678 -1.2488 0.0001 7 6 4.9764 -2.2734 0.0001 8 1 5.0095 -2.9657 0.8284 9 6 5.8548 -2.4222 -1.0644 10 7 6.0606 -1.4204 -1.8927 11 14 6.7446 -4.0445 -1.3213 12 1 6.3420 -5.0032 -0.2612 13 1 6.3875 -4.5996 -2.6516 14 1 8.2111 -3.8204 -1.2559 15 6 3.5713 -0.6886 1.2643 16 6 2.0397 -0.7208 1.2502 17 1 1.6978 -1.7556 1.2390 18 7 1.5255 -0.0487 2.4460 19 6 1.4000 -0.7313 3.6013 20 8 1.7139 -1.9047 3.6511 21 6 0.8808 -0.0536 4.8073 22 6 0.5243 1.3054 4.7465 23 6 0.0392 1.9486 5.8385 24 6 -0.1020 1.2608 7.0584 25 7 -0.5716 1.8820 8.1446 26 6 -0.7071 1.2521 9.2866 27 6 -0.3706 -0.0925 9.4272 28 6 0.1154 -0.7882 8.3571 29 6 0.2607 -0.1077 7.1319 30 6 0.7540 -0.7591 5.9929 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5134 0.8903 33 1 -0.3633 0.5145 -0.8897 34 1 1.6573 -0.2207 -2.1398 35 1 1.6978 -1.7556 -1.2383 36 1 3.9417 -1.2846 -2.0983 37 1 3.9143 0.3406 -1.3699 38 1 6.6747 -1.5242 -2.6364 39 1 3.9416 -1.2845 2.0985 40 1 3.9143 0.3409 1.3674 41 1 1.2753 0.8876 2.4062 42 1 0.6330 1.8433 3.8162 43 1 -0.2339 2.9914 5.7729 44 1 -1.0899 1.7901 10.1412 45 1 -0.4939 -0.5839 10.3809 46 1 0.3819 -1.8309 8.4477 47 1 1.0331 -1.8014 6.0393 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000968191750.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:24:53 Heat of formation + Delta-G solvation = 16.046186 kcal Electronic energy + Delta-G solvation = -28744.318719 eV Core-core repulsion = 24891.246762 eV Total energy + Delta-G solvation = -3853.071957 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.97073 -41.02233 -39.31625 -37.68454 -36.24435 -34.66911 -34.40670 -33.04715 -31.99580 -31.11066 -30.32904 -28.94250 -26.26596 -25.62919 -24.86796 -23.88808 -23.07011 -22.69802 -21.89833 -21.10123 -19.34506 -18.81063 -18.73482 -17.94105 -17.09870 -16.88838 -16.64447 -16.20187 -15.64969 -15.53578 -15.42091 -15.33272 -15.11957 -15.00663 -14.90173 -14.51244 -14.43465 -14.16266 -14.00096 -13.57862 -13.22631 -13.15090 -13.09832 -12.77553 -12.74699 -12.62740 -12.47021 -12.30111 -12.02718 -11.95937 -11.67473 -11.61109 -11.46972 -11.26854 -10.99707 -10.61803 -10.52873 -10.19349 -9.83465 -9.34917 -8.71015 -7.92049 -5.37184 -0.81985 -0.35079 0.86033 1.40008 1.42354 1.44038 1.55601 2.03943 2.29156 2.49202 3.07628 3.21977 3.26532 3.54484 3.55744 3.71003 3.72802 3.80196 3.95882 3.99217 4.01462 4.04410 4.11268 4.29162 4.44034 4.50691 4.51229 4.65594 4.75762 4.76778 4.87007 4.91233 4.94712 4.95880 5.01939 5.03232 5.09338 5.17435 5.17918 5.22221 5.27798 5.42579 5.45597 5.48929 5.55319 5.61929 5.74689 5.76824 6.35252 6.52255 6.87090 7.11171 7.19008 7.80884 8.30723 9.13770 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.018156 B = 0.002468 C = 0.002269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1541.842692 B =11340.846224 C =12338.309076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.083 4.083 3 H 0.083 0.917 4 C -0.123 4.123 5 C 0.171 3.829 6 N -0.606 5.606 7 C -0.266 4.266 8 H 0.052 0.948 9 C -0.044 4.044 10 N -0.928 5.928 11 Si 0.965 3.035 12 H -0.274 1.274 13 H -0.283 1.283 14 H -0.288 1.288 15 C 0.144 3.856 16 C 0.150 3.850 17 H 0.058 0.942 18 N -0.698 5.698 19 C 0.553 3.447 20 O -0.581 6.581 21 C -0.143 4.143 22 C -0.070 4.070 23 C -0.100 4.100 24 C 0.124 3.876 25 N -0.506 5.506 26 C 0.140 3.860 27 C -0.171 4.171 28 C -0.056 4.056 29 C -0.130 4.130 30 C -0.032 4.032 31 H 0.042 0.958 32 H 0.069 0.931 33 H 0.074 0.926 34 H 0.084 0.916 35 H 0.045 0.955 36 H 0.055 0.945 37 H 0.006 0.994 38 H 0.252 0.748 39 H 0.029 0.971 40 H 0.022 0.978 41 H 0.414 0.586 42 H 0.160 0.840 43 H 0.159 0.841 44 H 0.194 0.806 45 H 0.177 0.823 46 H 0.161 0.839 47 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.375 8.677 19.064 27.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.102 4.102 3 H 0.101 0.899 4 C -0.162 4.162 5 C 0.046 3.954 6 N -0.330 5.330 7 C -0.396 4.396 8 H 0.070 0.930 9 C -0.240 4.240 10 N -0.574 5.574 11 Si 0.793 3.207 12 H -0.199 1.199 13 H -0.209 1.209 14 H -0.215 1.215 15 C 0.017 3.983 16 C 0.044 3.956 17 H 0.076 0.924 18 N -0.350 5.350 19 C 0.342 3.658 20 O -0.462 6.462 21 C -0.146 4.146 22 C -0.090 4.090 23 C -0.119 4.119 24 C 0.003 3.997 25 N -0.215 5.215 26 C -0.032 4.032 27 C -0.190 4.190 28 C -0.082 4.082 29 C -0.132 4.132 30 C -0.052 4.052 31 H 0.061 0.939 32 H 0.088 0.912 33 H 0.093 0.907 34 H 0.102 0.898 35 H 0.064 0.936 36 H 0.073 0.927 37 H 0.024 0.976 38 H 0.062 0.938 39 H 0.048 0.952 40 H 0.039 0.961 41 H 0.252 0.748 42 H 0.177 0.823 43 H 0.177 0.823 44 H 0.211 0.789 45 H 0.194 0.806 46 H 0.179 0.821 47 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -18.244 8.766 18.753 27.592 hybrid contribution 1.273 -1.544 -0.376 2.036 sum -16.971 7.221 18.377 26.036 Atomic orbital electron populations 1.21785 0.92860 1.01740 1.02935 1.21244 0.96985 0.99440 0.92535 0.89913 1.22078 0.96615 0.99843 0.97667 1.20727 0.90724 0.95479 0.88479 1.44217 1.48205 1.39747 1.00823 1.19409 1.10498 1.03622 1.06100 0.93004 1.25713 0.98150 1.00496 0.99655 1.70167 1.38420 1.30498 1.18323 0.85255 0.77799 0.80009 0.77681 1.19925 1.20945 1.21456 1.21225 0.92917 0.95786 0.88408 1.21291 0.93678 0.96412 0.84213 0.92392 1.45777 1.64933 1.15073 1.09172 1.18624 0.77348 0.85975 0.83870 1.90788 1.51955 1.18093 1.85343 1.19879 1.05575 0.95685 0.93484 1.21121 0.95708 0.92013 1.00174 1.20908 0.99604 1.01401 0.89951 1.19307 0.95909 0.90420 0.94092 1.68137 1.14711 1.38820 0.99784 1.23747 0.91599 0.92677 0.95209 1.22321 0.99798 0.95717 1.01168 1.21936 0.93972 1.01417 0.90867 1.18976 1.03290 0.95248 0.95686 1.21527 0.93023 1.00123 0.90546 0.93850 0.91226 0.90745 0.89773 0.93565 0.92657 0.97623 0.93838 0.95238 0.96059 0.74783 0.82276 0.82339 0.78899 0.80603 0.82150 0.84405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.04 9.02 71.98 0.65 -2.39 16 2 C -0.08 -2.46 2.27 -10.77 -0.02 -2.49 16 3 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 4 C -0.12 -4.42 5.36 30.67 0.16 -4.25 16 5 C 0.17 8.22 5.31 86.36 0.46 8.68 16 6 N -0.61 -31.93 2.99 -699.09 -2.09 -34.02 16 7 C -0.27 -15.62 9.59 84.03 0.81 -14.82 16 8 H 0.05 3.12 7.89 -2.91 -0.02 3.10 16 9 C -0.04 -2.56 4.91 84.86 0.42 -2.14 16 10 N -0.93 -55.50 11.19 21.65 0.24 -55.26 16 11 Si 0.96 46.66 29.59 68.60 2.03 48.69 16 12 H -0.27 -13.03 7.11 99.48 0.71 -12.33 16 13 H -0.28 -13.36 7.11 99.48 0.71 -12.66 16 14 H -0.29 -13.73 7.11 99.48 0.71 -13.02 16 15 C 0.14 6.47 6.09 86.37 0.53 7.00 16 16 C 0.15 5.35 2.06 45.08 0.09 5.44 16 17 H 0.06 2.45 7.58 -2.39 -0.02 2.43 16 18 N -0.70 -19.36 4.32 -445.11 -1.92 -21.28 16 19 C 0.55 17.38 7.73 86.76 0.67 18.05 16 20 O -0.58 -23.86 15.97 -3.93 -0.06 -23.92 16 21 C -0.14 -3.52 5.87 -20.10 -0.12 -3.64 16 22 C -0.07 -1.28 9.44 22.27 0.21 -1.07 16 23 C -0.10 -1.82 9.95 22.30 0.22 -1.60 16 24 C 0.12 2.59 6.61 40.35 0.27 2.86 16 25 N -0.51 -9.68 10.33 -188.45 -1.95 -11.63 16 26 C 0.14 1.71 11.15 85.06 0.95 2.66 16 27 C -0.17 -1.71 10.03 22.14 0.22 -1.49 16 28 C -0.06 -0.81 9.89 22.53 0.22 -0.59 16 29 C -0.13 -2.68 5.74 -21.29 -0.12 -2.80 16 30 C -0.03 -0.77 9.35 22.82 0.21 -0.56 16 31 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 32 H 0.07 1.27 7.35 -2.39 -0.02 1.25 16 33 H 0.07 1.40 8.14 -2.38 -0.02 1.38 16 34 H 0.08 2.56 8.14 -2.39 -0.02 2.54 16 35 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 36 H 0.06 3.02 6.04 -2.38 -0.01 3.01 16 37 H 0.01 0.28 8.14 -2.39 -0.02 0.26 16 38 H 0.25 14.46 8.31 -92.71 -0.77 13.69 16 39 H 0.03 1.46 7.93 -2.39 -0.02 1.44 16 40 H 0.02 0.94 8.14 -2.38 -0.02 0.92 16 41 H 0.41 8.12 6.29 -92.71 -0.58 7.54 16 42 H 0.16 1.91 6.35 -2.91 -0.02 1.89 16 43 H 0.16 2.20 8.06 -2.91 -0.02 2.18 16 44 H 0.19 0.90 8.06 -2.91 -0.02 0.87 16 45 H 0.18 0.44 8.06 -2.91 -0.02 0.41 16 46 H 0.16 1.61 8.06 -2.91 -0.02 1.58 16 47 H 0.14 3.38 7.62 -2.91 -0.02 3.36 16 Total: -1.00 -78.15 380.64 2.48 -75.67 By element: Atomic # 1 Polarization: 14.49 SS G_CDS: 0.40 Total: 14.90 kcal Atomic # 6 Polarization: 1.03 SS G_CDS: 5.82 Total: 6.86 kcal Atomic # 7 Polarization: -116.47 SS G_CDS: -5.72 Total: -122.19 kcal Atomic # 8 Polarization: -23.86 SS G_CDS: -0.06 Total: -23.92 kcal Atomic # 14 Polarization: 46.66 SS G_CDS: 2.03 Total: 48.69 kcal Total: -78.15 2.48 -75.67 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968191750.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.719 kcal (2) G-P(sol) polarization free energy of solvation -78.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.673 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds