Wall clock time and date at job start Tue Mar 31 2020 22:24:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 109.45907 * 2 1 4 4 C 1.53348 * 109.42186 * 240.09131 * 2 1 3 5 5 C 1.53188 * 109.14862 * 178.67600 * 4 2 1 6 6 N 1.46927 * 108.89428 * 54.57993 * 5 4 2 7 7 C 1.36933 * 120.63022 * 126.33925 * 6 5 4 8 8 H 1.08000 * 120.00191 * 331.82823 * 7 6 5 9 9 C 1.38816 * 120.00216 * 151.82741 * 7 6 5 10 10 N 1.31624 * 119.99356 * 343.07025 * 9 7 6 11 11 Si 1.86793 * 120.00395 * 163.07047 * 9 7 6 12 12 H 1.48493 * 109.47484 * 90.00085 * 11 9 7 13 13 H 1.48503 * 109.47169 * 210.00310 * 11 9 7 14 14 H 1.48506 * 109.47138 * 329.99723 * 11 9 7 15 15 C 1.46927 * 118.73625 * 306.32307 * 6 5 4 16 16 C 1.53047 * 109.45598 * 119.96396 * 2 1 3 17 17 H 1.08998 * 109.52243 * 301.35797 * 16 2 1 18 18 N 1.46502 * 109.49596 * 61.43772 * 16 2 1 19 19 C 1.34770 * 119.99898 * 204.83689 * 18 16 2 20 20 O 1.21561 * 120.00490 * 359.97438 * 19 18 16 21 21 C 1.47766 * 119.99990 * 179.97438 * 19 18 16 22 22 C 1.40632 * 119.80239 * 359.73001 * 21 19 18 23 23 C 1.35712 * 120.91885 * 179.72700 * 22 21 19 24 24 C 1.40756 * 120.11156 * 0.52197 * 23 22 21 25 25 N 1.33645 * 120.83054 * 179.78142 * 24 23 22 26 26 C 1.31122 * 121.39136 * 179.97438 * 25 24 23 27 27 C 1.39306 * 121.77425 * 0.02562 * 26 25 24 28 28 C 1.36584 * 119.90398 * 359.97223 * 27 26 25 29 29 C 1.40892 * 118.15780 * 0.02562 * 28 27 26 30 30 C 1.38551 * 119.80846 * 179.97438 * 21 19 18 31 31 H 1.08999 * 109.47631 * 300.03785 * 1 2 3 32 32 H 1.09003 * 109.46594 * 60.03773 * 1 2 3 33 33 H 1.09002 * 109.47240 * 180.02562 * 1 2 3 34 34 H 1.08999 * 109.68200 * 58.71226 * 4 2 1 35 35 H 1.08993 * 109.47490 * 298.51759 * 4 2 1 36 36 H 1.09007 * 109.58820 * 294.72168 * 5 4 2 37 37 H 1.09000 * 109.58865 * 174.43884 * 5 4 2 38 38 H 0.96997 * 119.99488 * 180.02562 * 10 9 7 39 39 H 1.08997 * 109.58424 * 173.39841 * 15 6 5 40 40 H 1.08997 * 109.58254 * 293.81449 * 15 6 5 41 41 H 0.97007 * 119.99972 * 24.83391 * 18 16 2 42 42 H 1.07997 * 119.54562 * 359.97438 * 22 21 19 43 43 H 1.07998 * 119.94270 * 180.27600 * 23 22 21 44 44 H 1.08008 * 119.10956 * 179.97438 * 26 25 24 45 45 H 1.08005 * 120.05198 * 180.02562 * 27 26 25 46 46 H 1.08001 * 120.91863 * 180.02562 * 28 27 26 47 47 H 1.08007 * 120.29587 * 0.02562 * 30 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0277 0.0000 4 6 2.0399 -0.7211 -1.2536 5 6 3.5714 -0.6886 -1.2641 6 7 4.0679 -1.2488 0.0002 7 6 4.9764 -2.2733 0.0003 8 1 5.0044 -2.9703 -0.8243 9 6 5.8614 -2.4163 1.0601 10 7 6.0658 -1.4124 1.8866 11 14 6.7621 -4.0329 1.3134 12 1 8.0466 -4.0060 0.5688 13 1 7.0329 -4.2273 2.7606 14 1 5.9228 -5.1510 0.8124 15 6 3.5712 -0.6886 1.2644 16 6 2.0398 -0.7208 1.2502 17 1 1.6570 -0.2212 2.1402 18 7 1.5801 -2.1117 1.2343 19 6 1.4546 -2.7931 2.3903 20 8 1.7232 -2.2539 3.4461 21 6 0.9903 -4.1959 2.3743 22 6 0.6752 -4.8139 1.1510 23 6 0.2521 -6.1028 1.1096 24 6 0.1121 -6.8387 2.3012 25 7 -0.3076 -8.1074 2.2774 26 6 -0.4414 -8.8033 3.3806 27 6 -0.1549 -8.2590 4.6306 28 6 0.2787 -6.9675 4.7277 29 6 0.4213 -6.2229 3.5401 30 6 0.8632 -4.8929 3.5650 31 1 -0.3634 0.5144 0.8896 32 1 -0.3632 0.5133 -0.8904 33 1 -0.3634 -1.0277 0.0005 34 1 1.6593 -0.2219 -2.1447 35 1 1.6981 -1.7560 -1.2419 36 1 3.9144 0.3410 -1.3671 37 1 3.9439 -1.2830 -2.0984 38 1 6.6845 -1.5121 2.6270 39 1 3.9415 -1.2845 2.0986 40 1 3.9142 0.3409 1.3675 41 1 1.3660 -2.5422 0.3918 42 1 0.7750 -4.2565 0.2314 43 1 0.0186 -6.5632 0.1610 44 1 -0.7838 -9.8258 3.3186 45 1 -0.2746 -8.8577 5.5215 46 1 0.5059 -6.5291 5.6883 47 1 1.1015 -4.4153 4.5040 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000968191752.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:24:58 Heat of formation + Delta-G solvation = 38.954018 kcal Electronic energy + Delta-G solvation = -29891.820481 eV Core-core repulsion = 26039.741883 eV Total energy + Delta-G solvation = -3852.078598 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -40.95100 -39.64608 -37.81094 -36.50592 -34.17904 -33.63740 -32.87013 -31.11531 -30.79159 -30.11542 -29.02462 -27.33115 -24.94315 -24.01493 -23.90069 -22.45282 -21.99813 -21.11897 -20.91057 -18.77156 -18.36840 -17.79248 -17.00326 -16.62040 -15.93586 -15.20771 -14.96812 -14.62128 -14.53361 -14.28951 -14.12671 -13.86973 -13.79860 -13.65030 -13.44614 -13.27000 -13.20554 -12.98967 -12.61174 -12.14350 -11.92665 -11.69831 -11.59703 -11.52949 -11.34838 -11.08954 -10.91673 -10.71880 -10.70643 -10.52797 -10.23616 -9.93101 -9.72319 -9.66530 -9.53372 -9.41430 -8.91178 -8.46012 -8.44390 -8.26929 -6.64033 -5.76550 -3.19399 0.17716 0.58904 1.84650 2.49146 3.38059 3.46323 3.47176 3.52532 3.68195 4.10628 4.12836 4.47073 4.50960 4.55370 4.71921 4.86612 4.95576 5.06431 5.12199 5.21525 5.22683 5.33536 5.34464 5.42785 5.55073 5.64214 5.78583 5.83604 5.86379 5.91262 5.93818 5.99248 6.13587 6.17557 6.26512 6.29071 6.35196 6.37475 6.43307 6.53281 6.63731 6.67142 6.73910 6.87223 6.98089 7.36255 7.67286 7.73700 7.81333 8.05698 8.47326 8.72522 9.22247 9.86392 10.41983 11.31439 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010515 B = 0.004151 C = 0.003439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2662.103361 B = 6743.799707 C = 8138.783000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.094 4.094 3 H 0.078 0.922 4 C -0.129 4.129 5 C 0.142 3.858 6 N -0.587 5.587 7 C -0.254 4.254 8 H 0.063 0.937 9 C 0.009 3.991 10 N -0.897 5.897 11 Si 0.894 3.106 12 H -0.287 1.287 13 H -0.290 1.290 14 H -0.280 1.280 15 C 0.160 3.840 16 C 0.125 3.875 17 H 0.077 0.923 18 N -0.690 5.690 19 C 0.555 3.445 20 O -0.542 6.542 21 C -0.118 4.118 22 C -0.068 4.068 23 C -0.101 4.101 24 C 0.140 3.860 25 N -0.478 5.478 26 C 0.134 3.866 27 C -0.185 4.185 28 C -0.045 4.045 29 C -0.112 4.112 30 C -0.033 4.033 31 H 0.050 0.950 32 H 0.050 0.950 33 H 0.050 0.950 34 H 0.055 0.945 35 H 0.053 0.947 36 H 0.018 0.982 37 H 0.053 0.947 38 H 0.254 0.746 39 H 0.097 0.903 40 H 0.026 0.974 41 H 0.394 0.606 42 H 0.133 0.867 43 H 0.140 0.860 44 H 0.158 0.842 45 H 0.138 0.862 46 H 0.141 0.859 47 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.693 -7.680 0.826 17.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.113 4.113 3 H 0.097 0.903 4 C -0.168 4.168 5 C 0.015 3.985 6 N -0.309 5.309 7 C -0.384 4.384 8 H 0.081 0.919 9 C -0.191 4.191 10 N -0.541 5.541 11 Si 0.724 3.276 12 H -0.214 1.214 13 H -0.216 1.216 14 H -0.205 1.205 15 C 0.034 3.966 16 C 0.020 3.980 17 H 0.095 0.905 18 N -0.340 5.340 19 C 0.341 3.659 20 O -0.421 6.421 21 C -0.121 4.121 22 C -0.089 4.089 23 C -0.119 4.119 24 C 0.018 3.982 25 N -0.186 5.186 26 C -0.039 4.039 27 C -0.204 4.204 28 C -0.072 4.072 29 C -0.114 4.114 30 C -0.053 4.053 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.073 0.927 35 H 0.071 0.929 36 H 0.036 0.964 37 H 0.072 0.928 38 H 0.064 0.936 39 H 0.115 0.885 40 H 0.044 0.956 41 H 0.231 0.769 42 H 0.151 0.849 43 H 0.157 0.843 44 H 0.176 0.824 45 H 0.155 0.845 46 H 0.159 0.841 47 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -15.526 -7.535 0.810 17.277 hybrid contribution 0.769 -0.726 0.601 1.216 sum -14.757 -8.261 1.411 16.971 Atomic orbital electron populations 1.21855 0.95981 1.01354 1.01016 1.21376 0.94591 0.99943 0.95424 0.90332 1.22137 0.99284 0.99316 0.96103 1.20933 0.90673 0.96577 0.90300 1.43971 1.48239 1.39613 0.99125 1.19056 1.09765 1.02966 1.06570 0.91916 1.24989 0.97126 0.97089 0.99855 1.69995 1.37172 1.28936 1.17984 0.86430 0.79767 0.84166 0.77240 1.21383 1.21561 1.20540 1.21200 0.86592 0.97825 0.91022 1.21836 0.99018 0.80174 0.96992 0.90474 1.45747 1.66139 1.14089 1.08019 1.17991 0.78127 0.85298 0.84461 1.90752 1.50944 1.69625 1.30770 1.20138 1.02750 0.95308 0.93904 1.21004 0.95693 0.94813 0.97356 1.20645 1.00586 0.93543 0.97143 1.18977 0.96131 0.90415 0.92653 1.68051 1.13133 1.06195 1.31214 1.22986 0.93591 0.99565 0.87729 1.21864 1.02560 0.96459 0.99560 1.21577 0.93831 0.93925 0.97818 1.18811 1.02821 0.95370 0.94352 1.21444 0.93376 0.91652 0.98796 0.93065 0.93102 0.93086 0.92659 0.92861 0.96418 0.92823 0.93611 0.88488 0.95622 0.76941 0.84887 0.84263 0.82432 0.84460 0.84090 0.83708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.80 9.05 37.16 0.34 -1.47 16 2 C -0.09 -1.43 2.48 -90.41 -0.22 -1.66 16 3 H 0.08 1.21 8.14 -51.93 -0.42 0.78 16 4 C -0.13 -1.97 5.23 -26.45 -0.14 -2.11 16 5 C 0.14 2.76 6.50 -3.71 -0.02 2.74 16 6 N -0.59 -14.00 2.91 -172.32 -0.50 -14.50 16 7 C -0.25 -6.82 9.58 -15.06 -0.14 -6.96 16 8 H 0.06 1.66 7.88 -52.49 -0.41 1.24 16 9 C 0.01 0.24 4.92 -17.43 -0.09 0.16 16 10 N -0.90 -26.44 11.20 55.49 0.62 -25.82 16 11 Si 0.89 22.28 29.59 -169.99 -5.03 17.25 16 12 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 13 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 14 H -0.28 -6.88 7.11 56.52 0.40 -6.47 16 15 C 0.16 3.79 4.90 -3.71 -0.02 3.77 16 16 C 0.13 2.34 2.24 -67.81 -0.15 2.18 16 17 H 0.08 1.49 7.58 -51.93 -0.39 1.09 16 18 N -0.69 -12.10 4.20 -54.66 -0.23 -12.33 16 19 C 0.56 10.50 7.73 -12.37 -0.10 10.41 16 20 O -0.54 -12.03 15.97 5.31 0.08 -11.94 16 21 C -0.12 -1.90 5.87 -104.98 -0.62 -2.52 16 22 C -0.07 -0.94 9.44 -39.58 -0.37 -1.32 16 23 C -0.10 -1.34 9.95 -39.53 -0.39 -1.73 16 24 C 0.14 1.97 6.61 -84.78 -0.56 1.41 16 25 N -0.48 -6.29 10.33 -10.92 -0.11 -6.41 16 26 C 0.13 1.34 11.14 -17.46 -0.19 1.14 16 27 C -0.18 -1.65 10.03 -39.78 -0.40 -2.05 16 28 C -0.05 -0.48 9.89 -39.17 -0.39 -0.87 16 29 C -0.11 -1.52 5.74 -106.82 -0.61 -2.13 16 30 C -0.03 -0.49 9.35 -38.74 -0.36 -0.85 16 31 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 33 H 0.05 0.62 7.54 -51.93 -0.39 0.23 16 34 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.05 0.79 6.41 -51.93 -0.33 0.46 16 36 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 37 H 0.05 1.03 7.93 -51.93 -0.41 0.62 16 38 H 0.25 7.34 8.31 -40.82 -0.34 7.00 16 39 H 0.10 2.72 6.06 -51.93 -0.31 2.40 16 40 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.39 6.15 4.63 -40.82 -0.19 5.96 16 42 H 0.13 1.58 6.35 -52.49 -0.33 1.25 16 43 H 0.14 1.57 8.06 -52.49 -0.42 1.15 16 44 H 0.16 1.02 8.06 -52.48 -0.42 0.60 16 45 H 0.14 0.77 8.06 -52.48 -0.42 0.35 16 46 H 0.14 1.16 8.06 -52.49 -0.42 0.73 16 47 H 0.15 2.11 7.62 -52.48 -0.40 1.71 16 LS Contribution 377.56 15.07 5.69 5.69 Total: -1.00 -33.18 377.56 -10.47 -43.65 By element: Atomic # 1 Polarization: 12.81 SS G_CDS: -6.54 Total: 6.27 kcal Atomic # 6 Polarization: 2.59 SS G_CDS: -4.45 Total: -1.86 kcal Atomic # 7 Polarization: -58.83 SS G_CDS: -0.22 Total: -59.05 kcal Atomic # 8 Polarization: -12.03 SS G_CDS: 0.08 Total: -11.94 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.03 Total: 17.25 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -33.18 -10.47 -43.65 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968191752.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.602 kcal (2) G-P(sol) polarization free energy of solvation -33.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.648 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds