Wall clock time and date at job start Tue Mar 31 2020 22:24:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 109.45907 * 2 1 4 4 C 1.53348 * 109.42186 * 240.09131 * 2 1 3 5 5 C 1.53188 * 109.14862 * 178.67600 * 4 2 1 6 6 N 1.46927 * 108.89428 * 54.57993 * 5 4 2 7 7 C 1.36933 * 120.63022 * 126.33925 * 6 5 4 8 8 H 1.08000 * 120.00191 * 331.82823 * 7 6 5 9 9 C 1.38816 * 120.00216 * 151.82741 * 7 6 5 10 10 N 1.31624 * 119.99356 * 343.07025 * 9 7 6 11 11 Si 1.86793 * 120.00395 * 163.07047 * 9 7 6 12 12 H 1.48493 * 109.47484 * 90.00085 * 11 9 7 13 13 H 1.48503 * 109.47169 * 210.00310 * 11 9 7 14 14 H 1.48506 * 109.47138 * 329.99723 * 11 9 7 15 15 C 1.46927 * 118.73625 * 306.32307 * 6 5 4 16 16 C 1.53047 * 109.45598 * 119.96396 * 2 1 3 17 17 H 1.08998 * 109.52243 * 301.35797 * 16 2 1 18 18 N 1.46502 * 109.49596 * 61.43772 * 16 2 1 19 19 C 1.34770 * 119.99898 * 204.83689 * 18 16 2 20 20 O 1.21561 * 120.00490 * 359.97438 * 19 18 16 21 21 C 1.47766 * 119.99990 * 179.97438 * 19 18 16 22 22 C 1.40632 * 119.80239 * 359.73001 * 21 19 18 23 23 C 1.35712 * 120.91885 * 179.72700 * 22 21 19 24 24 C 1.40756 * 120.11156 * 0.52197 * 23 22 21 25 25 N 1.33645 * 120.83054 * 179.78142 * 24 23 22 26 26 C 1.31122 * 121.39136 * 179.97438 * 25 24 23 27 27 C 1.39306 * 121.77425 * 0.02562 * 26 25 24 28 28 C 1.36584 * 119.90398 * 359.97223 * 27 26 25 29 29 C 1.40892 * 118.15780 * 0.02562 * 28 27 26 30 30 C 1.38551 * 119.80846 * 179.97438 * 21 19 18 31 31 H 1.08999 * 109.47631 * 300.03785 * 1 2 3 32 32 H 1.09003 * 109.46594 * 60.03773 * 1 2 3 33 33 H 1.09002 * 109.47240 * 180.02562 * 1 2 3 34 34 H 1.08999 * 109.68200 * 58.71226 * 4 2 1 35 35 H 1.08993 * 109.47490 * 298.51759 * 4 2 1 36 36 H 1.09007 * 109.58820 * 294.72168 * 5 4 2 37 37 H 1.09000 * 109.58865 * 174.43884 * 5 4 2 38 38 H 0.96997 * 119.99488 * 180.02562 * 10 9 7 39 39 H 1.08997 * 109.58424 * 173.39841 * 15 6 5 40 40 H 1.08997 * 109.58254 * 293.81449 * 15 6 5 41 41 H 0.97007 * 119.99972 * 24.83391 * 18 16 2 42 42 H 1.07997 * 119.54562 * 359.97438 * 22 21 19 43 43 H 1.07998 * 119.94270 * 180.27600 * 23 22 21 44 44 H 1.08008 * 119.10956 * 179.97438 * 26 25 24 45 45 H 1.08005 * 120.05198 * 180.02562 * 27 26 25 46 46 H 1.08001 * 120.91863 * 180.02562 * 28 27 26 47 47 H 1.08007 * 120.29587 * 0.02562 * 30 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0277 0.0000 4 6 2.0399 -0.7211 -1.2536 5 6 3.5714 -0.6886 -1.2641 6 7 4.0679 -1.2488 0.0002 7 6 4.9764 -2.2733 0.0003 8 1 5.0044 -2.9703 -0.8243 9 6 5.8614 -2.4163 1.0601 10 7 6.0658 -1.4124 1.8866 11 14 6.7621 -4.0329 1.3134 12 1 8.0466 -4.0060 0.5688 13 1 7.0329 -4.2273 2.7606 14 1 5.9228 -5.1510 0.8124 15 6 3.5712 -0.6886 1.2644 16 6 2.0398 -0.7208 1.2502 17 1 1.6570 -0.2212 2.1402 18 7 1.5801 -2.1117 1.2343 19 6 1.4546 -2.7931 2.3903 20 8 1.7232 -2.2539 3.4461 21 6 0.9903 -4.1959 2.3743 22 6 0.6752 -4.8139 1.1510 23 6 0.2521 -6.1028 1.1096 24 6 0.1121 -6.8387 2.3012 25 7 -0.3076 -8.1074 2.2774 26 6 -0.4414 -8.8033 3.3806 27 6 -0.1549 -8.2590 4.6306 28 6 0.2787 -6.9675 4.7277 29 6 0.4213 -6.2229 3.5401 30 6 0.8632 -4.8929 3.5650 31 1 -0.3634 0.5144 0.8896 32 1 -0.3632 0.5133 -0.8904 33 1 -0.3634 -1.0277 0.0005 34 1 1.6593 -0.2219 -2.1447 35 1 1.6981 -1.7560 -1.2419 36 1 3.9144 0.3410 -1.3671 37 1 3.9439 -1.2830 -2.0984 38 1 6.6845 -1.5121 2.6270 39 1 3.9415 -1.2845 2.0986 40 1 3.9142 0.3409 1.3675 41 1 1.3660 -2.5422 0.3918 42 1 0.7750 -4.2565 0.2314 43 1 0.0186 -6.5632 0.1610 44 1 -0.7838 -9.8258 3.3186 45 1 -0.2746 -8.8577 5.5215 46 1 0.5059 -6.5291 5.6883 47 1 1.1015 -4.4153 4.5040 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000968191752.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:24:57 Heat of formation + Delta-G solvation = 18.765745 kcal Electronic energy + Delta-G solvation = -29892.695911 eV Core-core repulsion = 26039.741883 eV Total energy + Delta-G solvation = -3852.954028 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.96334 -41.03435 -39.24593 -37.65239 -35.95486 -34.61989 -34.31000 -32.86136 -31.98088 -31.11837 -30.50085 -28.91736 -26.23091 -25.57357 -24.87112 -23.84195 -23.12394 -22.75587 -22.17292 -20.32853 -19.54792 -18.86568 -18.62843 -17.81923 -17.05974 -16.80231 -16.59652 -16.01188 -15.73861 -15.52786 -15.44913 -15.30881 -15.03164 -14.94472 -14.71573 -14.60019 -14.44210 -14.12071 -14.00749 -13.58837 -13.15676 -13.09937 -13.01543 -12.77007 -12.71006 -12.59364 -12.47612 -12.47247 -12.26692 -11.95878 -11.62058 -11.56447 -11.32343 -11.06475 -10.98135 -10.54906 -10.53693 -10.05790 -9.80262 -9.34850 -8.64090 -7.87479 -5.31593 -0.81100 -0.35791 0.86144 1.36810 1.40545 1.43259 1.47187 2.19069 2.40014 2.46900 3.07302 3.25765 3.28808 3.53293 3.65972 3.68546 3.73342 3.88766 3.95622 3.98555 4.00515 4.04072 4.13577 4.27556 4.49853 4.52102 4.67742 4.71722 4.74220 4.80266 4.86356 4.90883 4.95964 4.96687 5.00513 5.09861 5.17636 5.18040 5.24512 5.25181 5.28616 5.46605 5.47207 5.51856 5.60043 5.70792 5.71700 5.74944 6.38829 6.62606 6.86111 7.14181 7.28604 7.87707 8.38186 9.17534 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010515 B = 0.004151 C = 0.003439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2662.103361 B = 6743.799707 C = 8138.783000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.087 4.087 3 H 0.078 0.922 4 C -0.116 4.116 5 C 0.135 3.865 6 N -0.600 5.600 7 C -0.248 4.248 8 H 0.070 0.930 9 C -0.048 4.048 10 N -0.933 5.933 11 Si 0.948 3.052 12 H -0.280 1.280 13 H -0.303 1.303 14 H -0.271 1.271 15 C 0.171 3.829 16 C 0.136 3.864 17 H 0.065 0.935 18 N -0.680 5.680 19 C 0.550 3.450 20 O -0.587 6.587 21 C -0.144 4.144 22 C -0.072 4.072 23 C -0.100 4.100 24 C 0.123 3.877 25 N -0.504 5.504 26 C 0.139 3.861 27 C -0.169 4.169 28 C -0.057 4.057 29 C -0.129 4.129 30 C -0.037 4.037 31 H 0.049 0.951 32 H 0.077 0.923 33 H 0.056 0.944 34 H 0.093 0.907 35 H 0.062 0.938 36 H 0.013 0.987 37 H 0.057 0.943 38 H 0.244 0.756 39 H 0.047 0.953 40 H -0.002 1.002 41 H 0.406 0.594 42 H 0.150 0.850 43 H 0.159 0.841 44 H 0.197 0.803 45 H 0.179 0.821 46 H 0.161 0.839 47 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.224 -10.191 -0.588 20.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.106 4.106 3 H 0.096 0.904 4 C -0.155 4.155 5 C 0.010 3.990 6 N -0.323 5.323 7 C -0.378 4.378 8 H 0.087 0.913 9 C -0.243 4.243 10 N -0.579 5.579 11 Si 0.777 3.223 12 H -0.206 1.206 13 H -0.230 1.230 14 H -0.196 1.196 15 C 0.044 3.956 16 C 0.030 3.970 17 H 0.083 0.917 18 N -0.330 5.330 19 C 0.338 3.662 20 O -0.470 6.470 21 C -0.147 4.147 22 C -0.092 4.092 23 C -0.119 4.119 24 C 0.002 3.998 25 N -0.213 5.213 26 C -0.033 4.033 27 C -0.188 4.188 28 C -0.083 4.083 29 C -0.131 4.131 30 C -0.057 4.057 31 H 0.068 0.932 32 H 0.096 0.904 33 H 0.075 0.925 34 H 0.111 0.889 35 H 0.080 0.920 36 H 0.031 0.969 37 H 0.076 0.924 38 H 0.054 0.946 39 H 0.066 0.934 40 H 0.016 0.984 41 H 0.244 0.756 42 H 0.167 0.833 43 H 0.176 0.824 44 H 0.214 0.786 45 H 0.197 0.803 46 H 0.179 0.821 47 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -18.090 -10.056 -0.673 20.708 hybrid contribution 1.513 -0.077 1.101 1.873 sum -16.577 -10.133 0.429 19.434 Atomic orbital electron populations 1.21771 0.93040 1.02166 1.02329 1.21335 0.96870 0.99196 0.93247 0.90384 1.22026 0.95554 1.00451 0.97498 1.21159 0.93762 0.95954 0.88134 1.44163 1.48029 1.39457 1.00654 1.19408 1.09018 1.03415 1.06004 0.91260 1.25652 0.98749 0.99530 1.00390 1.70162 1.38412 1.30704 1.18637 0.85559 0.79113 0.81388 0.76229 1.20641 1.22970 1.19595 1.20871 0.90010 0.95064 0.89660 1.21531 0.95281 0.81379 0.98832 0.91675 1.45624 1.65454 1.13612 1.08336 1.18533 0.77235 0.86422 0.84024 1.90715 1.53032 1.70895 1.32311 1.20009 1.05222 0.93912 0.95530 1.21063 0.95989 0.95279 0.96878 1.20885 0.99836 0.93190 0.97954 1.19233 0.96383 0.91212 0.92958 1.68120 1.14494 1.05857 1.32843 1.23779 0.91351 1.00819 0.87382 1.22331 0.99934 0.95765 1.00773 1.21928 0.93946 0.94741 0.97679 1.18980 1.03442 0.94882 0.95760 1.21514 0.93374 0.92582 0.98265 0.93180 0.90413 0.92533 0.88853 0.91963 0.96853 0.92420 0.94640 0.93406 0.98381 0.75586 0.83288 0.82354 0.78622 0.80319 0.82128 0.84475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.98 9.05 71.98 0.65 -2.33 16 2 C -0.09 -2.52 2.48 -10.66 -0.03 -2.54 16 3 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 4 C -0.12 -3.22 5.23 30.77 0.16 -3.06 16 5 C 0.13 5.12 6.50 86.36 0.56 5.68 16 6 N -0.60 -29.13 2.91 -699.11 -2.04 -31.17 16 7 C -0.25 -13.52 9.58 84.04 0.81 -12.71 16 8 H 0.07 3.64 7.88 -2.91 -0.02 3.61 16 9 C -0.05 -2.76 4.92 84.86 0.42 -2.34 16 10 N -0.93 -57.96 11.20 21.65 0.24 -57.72 16 11 Si 0.95 47.08 29.59 68.60 2.03 49.11 16 12 H -0.28 -13.44 7.11 99.48 0.71 -12.73 16 13 H -0.30 -15.54 7.11 99.48 0.71 -14.83 16 14 H -0.27 -12.89 7.11 99.48 0.71 -12.19 16 15 C 0.17 8.51 4.90 86.36 0.42 8.93 16 16 C 0.14 5.19 2.24 45.07 0.10 5.29 16 17 H 0.07 2.64 7.58 -2.39 -0.02 2.63 16 18 N -0.68 -24.20 4.20 -445.12 -1.87 -26.07 16 19 C 0.55 21.77 7.73 86.76 0.67 22.44 16 20 O -0.59 -27.92 15.97 -3.91 -0.06 -27.98 16 21 C -0.14 -4.77 5.87 -20.10 -0.12 -4.89 16 22 C -0.07 -1.95 9.44 22.27 0.21 -1.74 16 23 C -0.10 -2.55 9.95 22.30 0.22 -2.33 16 24 C 0.12 3.32 6.61 40.36 0.27 3.59 16 25 N -0.50 -12.10 10.33 -188.45 -1.95 -14.04 16 26 C 0.14 2.26 11.14 85.06 0.95 3.20 16 27 C -0.17 -2.36 10.03 22.14 0.22 -2.14 16 28 C -0.06 -1.10 9.89 22.53 0.22 -0.88 16 29 C -0.13 -3.43 5.74 -21.29 -0.12 -3.55 16 30 C -0.04 -1.16 9.35 22.82 0.21 -0.95 16 31 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 32 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 33 H 0.06 1.19 7.54 -2.39 -0.02 1.18 16 34 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 35 H 0.06 1.64 6.41 -2.39 -0.02 1.63 16 36 H 0.01 0.53 8.14 -2.38 -0.02 0.51 16 37 H 0.06 2.13 7.93 -2.39 -0.02 2.11 16 38 H 0.24 15.00 8.31 -92.71 -0.77 14.23 16 39 H 0.05 2.87 6.06 -2.39 -0.01 2.85 16 40 H 0.00 -0.09 8.14 -2.39 -0.02 -0.11 16 41 H 0.41 12.30 4.63 -92.70 -0.43 11.87 16 42 H 0.15 3.36 6.35 -2.91 -0.02 3.34 16 43 H 0.16 3.28 8.06 -2.91 -0.02 3.26 16 44 H 0.20 1.56 8.06 -2.91 -0.02 1.54 16 45 H 0.18 1.02 8.06 -2.91 -0.02 1.00 16 46 H 0.16 2.34 8.06 -2.91 -0.02 2.32 16 47 H 0.14 4.30 7.62 -2.91 -0.02 4.28 16 Total: -1.00 -77.82 377.56 2.75 -75.07 By element: Atomic # 1 Polarization: 22.58 SS G_CDS: 0.56 Total: 23.14 kcal Atomic # 6 Polarization: 3.83 SS G_CDS: 5.83 Total: 9.66 kcal Atomic # 7 Polarization: -123.39 SS G_CDS: -5.61 Total: -129.01 kcal Atomic # 8 Polarization: -27.92 SS G_CDS: -0.06 Total: -27.98 kcal Atomic # 14 Polarization: 47.08 SS G_CDS: 2.03 Total: 49.11 kcal Total: -77.82 2.75 -75.07 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968191752.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.839 kcal (2) G-P(sol) polarization free energy of solvation -77.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.074 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds