Wall clock time and date at job start Tue Mar 31 2020 22:25:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08990 * 109.46269 * 2 1 4 4 C 1.53040 * 109.45752 * 119.96371 * 2 1 3 5 5 C 1.53196 * 109.30788 * 181.38199 * 4 2 1 6 6 N 1.46919 * 108.77623 * 305.35993 * 5 4 2 7 7 C 1.36941 * 120.63471 * 233.58502 * 6 5 4 8 8 H 1.07996 * 119.99693 * 27.68871 * 7 6 5 9 9 C 1.38805 * 120.00144 * 207.68225 * 7 6 5 10 10 N 1.31623 * 120.00224 * 17.37786 * 9 7 6 11 11 Si 1.86807 * 120.00067 * 197.38069 * 9 7 6 12 12 H 1.48498 * 109.46980 * 0.02562 * 11 9 7 13 13 H 1.48497 * 109.47178 * 120.00144 * 11 9 7 14 14 H 1.48497 * 109.47101 * 240.00608 * 11 9 7 15 15 C 1.46932 * 118.73923 * 53.61395 * 6 5 4 16 16 C 1.53040 * 109.45550 * 240.02916 * 2 1 3 17 17 H 1.09002 * 109.49983 * 298.59625 * 16 2 1 18 18 N 1.46500 * 109.50018 * 58.66383 * 16 2 1 19 19 C 1.34768 * 120.00205 * 204.99638 * 18 16 2 20 20 O 1.21566 * 120.00132 * 0.02562 * 19 18 16 21 21 C 1.47774 * 120.00229 * 179.97438 * 19 18 16 22 22 C 1.40635 * 119.79987 * 0.02562 * 21 19 18 23 23 C 1.35704 * 120.91961 * 180.02562 * 22 21 19 24 24 C 1.40762 * 120.11236 * 359.96844 * 23 22 21 25 25 N 1.33646 * 120.83532 * 179.72881 * 24 23 22 26 26 C 1.31117 * 121.39288 * 179.72178 * 25 24 23 27 27 C 1.39312 * 121.76945 * 0.57472 * 26 25 24 28 28 C 1.36577 * 119.90818 * 359.71025 * 27 26 25 29 29 C 1.40891 * 118.15228 * 0.02562 * 28 27 26 30 30 C 1.38547 * 119.80717 * 180.02562 * 21 19 18 31 31 H 1.08996 * 109.47243 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.46725 * 299.97395 * 1 2 3 33 33 H 1.09001 * 109.46848 * 59.96768 * 1 2 3 34 34 H 1.08997 * 109.49640 * 301.33266 * 4 2 1 35 35 H 1.08998 * 109.50228 * 61.43274 * 4 2 1 36 36 H 1.08998 * 109.58580 * 65.15297 * 5 4 2 37 37 H 1.09004 * 109.58082 * 185.43741 * 5 4 2 38 38 H 0.97001 * 119.99998 * 179.97438 * 10 9 7 39 39 H 1.09003 * 109.58780 * 186.60116 * 15 6 5 40 40 H 1.08996 * 109.58554 * 66.17154 * 15 6 5 41 41 H 0.97000 * 119.99450 * 24.99725 * 18 16 2 42 42 H 1.07990 * 119.53875 * 0.02562 * 22 21 19 43 43 H 1.07995 * 119.94434 * 179.97438 * 23 22 21 44 44 H 1.08004 * 119.11376 * 180.29188 * 26 25 24 45 45 H 1.08000 * 120.04518 * 179.69542 * 27 26 25 46 46 H 1.07993 * 120.92439 * 179.97438 * 28 27 26 47 47 H 1.08000 * 120.29630 * 0.02562 * 30 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0276 0.0000 4 6 2.0398 -0.7207 1.2501 5 6 3.5714 -0.6886 1.2642 6 7 4.0678 -1.2490 0.0001 7 6 4.9763 -2.2736 0.0001 8 1 5.0096 -2.9657 0.8284 9 6 5.8544 -2.4226 -1.0646 10 7 6.0602 -1.4208 -1.8931 11 14 6.7439 -4.0450 -1.3216 12 1 6.3414 -5.0036 -0.2613 13 1 6.3866 -4.6002 -2.6518 14 1 8.2105 -3.8212 -1.2564 15 6 3.5713 -0.6888 -1.2643 16 6 2.0398 -0.7209 -1.2501 17 1 1.6972 -1.7556 -1.2385 18 7 1.5255 -0.0489 -2.4460 19 6 1.3970 -0.7325 -3.6003 20 8 1.7074 -1.9068 -3.6491 21 6 0.8777 -0.0548 -4.8065 22 6 0.5193 1.3037 -4.7452 23 6 0.0396 1.9483 -5.8388 24 6 -0.1056 1.2592 -7.0576 25 7 -0.5816 1.8784 -8.1421 26 6 -0.7162 1.2486 -9.2842 27 6 -0.3827 -0.0967 -9.4238 28 6 0.1045 -0.7920 -8.3539 29 6 0.2529 -0.1104 -7.1299 30 6 0.7468 -0.7616 -5.9909 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5134 0.8902 33 1 -0.3633 0.5143 -0.8897 34 1 1.6572 -0.2206 2.1398 35 1 1.6978 -1.7556 1.2385 36 1 3.9143 0.3409 1.3672 37 1 3.9416 -1.2825 2.0999 38 1 6.6741 -1.5249 -2.6369 39 1 3.9416 -1.2849 -2.0984 40 1 3.9142 0.3406 -1.3675 41 1 1.2775 0.8880 -2.4069 42 1 0.6274 1.8414 -3.8150 43 1 -0.2312 2.9917 -5.7739 44 1 -1.1003 1.7862 -10.1386 45 1 -0.5094 -0.5893 -10.3765 46 1 0.3679 -1.8355 -8.4436 47 1 1.0220 -1.8049 -6.0361 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000968191754.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:25:02 Heat of formation + Delta-G solvation = 37.497742 kcal Electronic energy + Delta-G solvation = -29105.609459 eV Core-core repulsion = 25253.467712 eV Total energy + Delta-G solvation = -3852.141747 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.06745 -39.65440 -37.83193 -36.64038 -34.41686 -33.73855 -33.15351 -31.13679 -30.84715 -30.23721 -28.76901 -27.35626 -25.02562 -24.05914 -24.00444 -22.57993 -22.02409 -21.06200 -20.52937 -19.51397 -18.28253 -17.81236 -17.11506 -16.76577 -15.97079 -15.53694 -14.97042 -14.69322 -14.64895 -14.27363 -14.18522 -14.02428 -13.73626 -13.58746 -13.54716 -13.35390 -13.29967 -13.04453 -12.43093 -12.25623 -11.98761 -11.80041 -11.70375 -11.60122 -11.56347 -10.90136 -10.82989 -10.71098 -10.64208 -10.44279 -10.14401 -9.99808 -9.90223 -9.77116 -9.54691 -9.44764 -9.03614 -8.59236 -8.42272 -8.41701 -6.65245 -5.74798 -3.17766 0.05807 0.46487 1.72852 2.35871 3.38079 3.43990 3.47824 3.50741 3.52269 3.97569 4.00530 4.36157 4.44589 4.54295 4.61750 4.72974 4.82155 4.92579 5.00557 5.17566 5.23675 5.25122 5.39378 5.50400 5.53460 5.59292 5.68942 5.71852 5.81868 5.90399 5.99546 6.01753 6.04205 6.10520 6.15418 6.24476 6.26402 6.38444 6.45733 6.52037 6.54176 6.72771 6.75382 6.92316 6.96837 7.29463 7.62783 7.73067 7.83093 7.89236 8.48232 8.57470 9.23737 9.87879 10.42439 11.33163 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.012704 B = 0.003103 C = 0.002634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2203.459954 B = 9020.766802 C =10627.632332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.092 4.092 3 H 0.067 0.933 4 C -0.125 4.125 5 C 0.142 3.858 6 N -0.588 5.588 7 C -0.255 4.255 8 H 0.067 0.933 9 C 0.006 3.994 10 N -0.899 5.899 11 Si 0.901 3.099 12 H -0.277 1.277 13 H -0.288 1.288 14 H -0.291 1.291 15 C 0.166 3.834 16 C 0.124 3.876 17 H 0.084 0.916 18 N -0.711 5.711 19 C 0.552 3.448 20 O -0.527 6.527 21 C -0.123 4.123 22 C -0.072 4.072 23 C -0.100 4.100 24 C 0.140 3.860 25 N -0.479 5.479 26 C 0.136 3.864 27 C -0.183 4.183 28 C -0.045 4.045 29 C -0.112 4.112 30 C -0.029 4.029 31 H 0.052 0.948 32 H 0.050 0.950 33 H 0.048 0.952 34 H 0.055 0.945 35 H 0.060 0.940 36 H 0.018 0.982 37 H 0.055 0.945 38 H 0.253 0.747 39 H 0.095 0.905 40 H 0.017 0.983 41 H 0.391 0.609 42 H 0.134 0.866 43 H 0.140 0.860 44 H 0.159 0.841 45 H 0.139 0.861 46 H 0.142 0.858 47 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.060 7.147 -9.857 20.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.112 4.112 3 H 0.085 0.915 4 C -0.165 4.165 5 C 0.015 3.985 6 N -0.311 5.311 7 C -0.385 4.385 8 H 0.084 0.916 9 C -0.193 4.193 10 N -0.542 5.542 11 Si 0.731 3.269 12 H -0.202 1.202 13 H -0.214 1.214 14 H -0.218 1.218 15 C 0.039 3.961 16 C 0.019 3.981 17 H 0.102 0.898 18 N -0.361 5.361 19 C 0.338 3.662 20 O -0.404 6.404 21 C -0.126 4.126 22 C -0.093 4.093 23 C -0.119 4.119 24 C 0.018 3.982 25 N -0.187 5.187 26 C -0.037 4.037 27 C -0.203 4.203 28 C -0.071 4.071 29 C -0.114 4.114 30 C -0.049 4.049 31 H 0.071 0.929 32 H 0.069 0.931 33 H 0.067 0.933 34 H 0.074 0.926 35 H 0.079 0.921 36 H 0.036 0.964 37 H 0.074 0.926 38 H 0.063 0.937 39 H 0.114 0.886 40 H 0.035 0.965 41 H 0.226 0.774 42 H 0.152 0.848 43 H 0.158 0.842 44 H 0.177 0.823 45 H 0.156 0.844 46 H 0.160 0.840 47 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -15.896 7.183 -9.791 20.003 hybrid contribution 0.629 -1.124 -0.391 1.346 sum -15.266 6.059 -10.183 19.325 Atomic orbital electron populations 1.21856 0.95986 1.01609 1.00731 1.21310 0.94576 0.99692 0.95582 0.91469 1.22069 0.98953 1.00054 0.95417 1.20960 0.90816 0.96486 0.90192 1.43967 1.48070 1.39873 0.99161 1.19181 1.09729 1.03190 1.06366 0.91554 1.25030 0.97186 0.97412 0.99683 1.70026 1.37473 1.29017 1.17730 0.86247 0.78904 0.83794 0.77963 1.20201 1.21450 1.21777 1.21105 0.86392 0.97507 0.91079 1.22041 0.98415 0.96414 0.81243 0.89835 1.45978 1.65636 1.13958 1.10567 1.18077 0.78548 0.86611 0.82971 1.90824 1.49436 1.15766 1.84368 1.20134 1.03067 0.94440 0.94955 1.20989 0.96087 0.93274 0.98926 1.20649 1.00341 1.00523 0.90342 1.18990 0.95794 0.90128 0.93264 1.68058 1.13391 1.38145 0.99059 1.23010 0.93581 0.91936 0.95134 1.21886 1.02078 0.96156 1.00199 1.21598 0.93816 1.00334 0.91331 1.18822 1.02584 0.94878 0.95102 1.21485 0.93015 1.00416 0.89995 0.92901 0.93088 0.93264 0.92588 0.92083 0.96431 0.92598 0.93725 0.88642 0.96490 0.77414 0.84844 0.84218 0.82342 0.84364 0.83989 0.83593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.84 9.02 37.16 0.34 -1.50 16 2 C -0.09 -1.45 2.27 -90.58 -0.21 -1.65 16 3 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 4 C -0.13 -2.08 5.36 -26.61 -0.14 -2.22 16 5 C 0.14 2.91 6.51 -3.71 -0.02 2.89 16 6 N -0.59 -14.84 3.00 -172.32 -0.52 -15.36 16 7 C -0.26 -7.15 9.59 -15.06 -0.14 -7.29 16 8 H 0.07 1.82 7.89 -52.49 -0.41 1.41 16 9 C 0.01 0.17 4.91 -17.43 -0.09 0.08 16 10 N -0.90 -26.84 11.19 55.49 0.62 -26.22 16 11 Si 0.90 22.54 29.59 -169.99 -5.03 17.51 16 12 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 13 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 14 H -0.29 -7.24 7.11 56.52 0.40 -6.83 16 15 C 0.17 4.02 4.89 -3.71 -0.02 4.00 16 16 C 0.12 2.37 2.06 -67.81 -0.14 2.23 16 17 H 0.08 1.83 7.58 -51.93 -0.39 1.44 16 18 N -0.71 -11.43 4.32 -54.66 -0.24 -11.67 16 19 C 0.55 9.73 7.73 -12.37 -0.10 9.64 16 20 O -0.53 -11.62 15.97 5.31 0.08 -11.54 16 21 C -0.12 -1.74 5.87 -104.98 -0.62 -2.36 16 22 C -0.07 -0.83 9.44 -39.58 -0.37 -1.20 16 23 C -0.10 -1.12 9.95 -39.54 -0.39 -1.51 16 24 C 0.14 1.73 6.61 -84.78 -0.56 1.17 16 25 N -0.48 -5.60 10.33 -10.92 -0.11 -5.71 16 26 C 0.14 1.19 11.15 -17.46 -0.19 0.99 16 27 C -0.18 -1.43 10.03 -39.78 -0.40 -1.83 16 28 C -0.04 -0.42 9.89 -39.18 -0.39 -0.81 16 29 C -0.11 -1.36 5.74 -106.82 -0.61 -1.97 16 30 C -0.03 -0.40 9.35 -38.74 -0.36 -0.76 16 31 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.05 0.56 7.36 -51.93 -0.38 0.18 16 34 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 36 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 37 H 0.06 1.13 7.94 -51.93 -0.41 0.71 16 38 H 0.25 7.34 8.31 -40.82 -0.34 7.00 16 39 H 0.10 2.74 6.04 -51.93 -0.31 2.43 16 40 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.39 4.93 6.30 -40.82 -0.26 4.68 16 42 H 0.13 1.18 6.35 -52.49 -0.33 0.85 16 43 H 0.14 1.29 8.06 -52.49 -0.42 0.86 16 44 H 0.16 0.85 8.06 -52.48 -0.42 0.42 16 45 H 0.14 0.64 8.06 -52.49 -0.42 0.22 16 46 H 0.14 1.03 8.06 -52.49 -0.42 0.60 16 47 H 0.15 1.97 7.62 -52.49 -0.40 1.57 16 LS Contribution 380.65 15.07 5.74 5.74 Total: -1.00 -34.54 380.65 -10.56 -45.11 By element: Atomic # 1 Polarization: 10.93 SS G_CDS: -6.69 Total: 4.24 kcal Atomic # 6 Polarization: 2.31 SS G_CDS: -4.42 Total: -2.11 kcal Atomic # 7 Polarization: -58.71 SS G_CDS: -0.24 Total: -58.95 kcal Atomic # 8 Polarization: -11.62 SS G_CDS: 0.08 Total: -11.54 kcal Atomic # 14 Polarization: 22.54 SS G_CDS: -5.03 Total: 17.51 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -34.54 -10.56 -45.11 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968191754.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.606 kcal (2) G-P(sol) polarization free energy of solvation -34.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.108 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds