Wall clock time and date at job start Tue Mar 31 2020 22:25:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08990 * 109.46269 * 2 1 4 4 C 1.53040 * 109.45752 * 119.96371 * 2 1 3 5 5 C 1.53196 * 109.30788 * 181.38199 * 4 2 1 6 6 N 1.46919 * 108.77623 * 305.35993 * 5 4 2 7 7 C 1.36941 * 120.63471 * 233.58502 * 6 5 4 8 8 H 1.07996 * 119.99693 * 27.68871 * 7 6 5 9 9 C 1.38805 * 120.00144 * 207.68225 * 7 6 5 10 10 N 1.31623 * 120.00224 * 17.37786 * 9 7 6 11 11 Si 1.86807 * 120.00067 * 197.38069 * 9 7 6 12 12 H 1.48498 * 109.46980 * 0.02562 * 11 9 7 13 13 H 1.48497 * 109.47178 * 120.00144 * 11 9 7 14 14 H 1.48497 * 109.47101 * 240.00608 * 11 9 7 15 15 C 1.46932 * 118.73923 * 53.61395 * 6 5 4 16 16 C 1.53040 * 109.45550 * 240.02916 * 2 1 3 17 17 H 1.09002 * 109.49983 * 298.59625 * 16 2 1 18 18 N 1.46500 * 109.50018 * 58.66383 * 16 2 1 19 19 C 1.34768 * 120.00205 * 204.99638 * 18 16 2 20 20 O 1.21566 * 120.00132 * 0.02562 * 19 18 16 21 21 C 1.47774 * 120.00229 * 179.97438 * 19 18 16 22 22 C 1.40635 * 119.79987 * 0.02562 * 21 19 18 23 23 C 1.35704 * 120.91961 * 180.02562 * 22 21 19 24 24 C 1.40762 * 120.11236 * 359.96844 * 23 22 21 25 25 N 1.33646 * 120.83532 * 179.72881 * 24 23 22 26 26 C 1.31117 * 121.39288 * 179.72178 * 25 24 23 27 27 C 1.39312 * 121.76945 * 0.57472 * 26 25 24 28 28 C 1.36577 * 119.90818 * 359.71025 * 27 26 25 29 29 C 1.40891 * 118.15228 * 0.02562 * 28 27 26 30 30 C 1.38547 * 119.80717 * 180.02562 * 21 19 18 31 31 H 1.08996 * 109.47243 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.46725 * 299.97395 * 1 2 3 33 33 H 1.09001 * 109.46848 * 59.96768 * 1 2 3 34 34 H 1.08997 * 109.49640 * 301.33266 * 4 2 1 35 35 H 1.08998 * 109.50228 * 61.43274 * 4 2 1 36 36 H 1.08998 * 109.58580 * 65.15297 * 5 4 2 37 37 H 1.09004 * 109.58082 * 185.43741 * 5 4 2 38 38 H 0.97001 * 119.99998 * 179.97438 * 10 9 7 39 39 H 1.09003 * 109.58780 * 186.60116 * 15 6 5 40 40 H 1.08996 * 109.58554 * 66.17154 * 15 6 5 41 41 H 0.97000 * 119.99450 * 24.99725 * 18 16 2 42 42 H 1.07990 * 119.53875 * 0.02562 * 22 21 19 43 43 H 1.07995 * 119.94434 * 179.97438 * 23 22 21 44 44 H 1.08004 * 119.11376 * 180.29188 * 26 25 24 45 45 H 1.08000 * 120.04518 * 179.69542 * 27 26 25 46 46 H 1.07993 * 120.92439 * 179.97438 * 28 27 26 47 47 H 1.08000 * 120.29630 * 0.02562 * 30 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0276 0.0000 4 6 2.0398 -0.7207 1.2501 5 6 3.5714 -0.6886 1.2642 6 7 4.0678 -1.2490 0.0001 7 6 4.9763 -2.2736 0.0001 8 1 5.0096 -2.9657 0.8284 9 6 5.8544 -2.4226 -1.0646 10 7 6.0602 -1.4208 -1.8931 11 14 6.7439 -4.0450 -1.3216 12 1 6.3414 -5.0036 -0.2613 13 1 6.3866 -4.6002 -2.6518 14 1 8.2105 -3.8212 -1.2564 15 6 3.5713 -0.6888 -1.2643 16 6 2.0398 -0.7209 -1.2501 17 1 1.6972 -1.7556 -1.2385 18 7 1.5255 -0.0489 -2.4460 19 6 1.3970 -0.7325 -3.6003 20 8 1.7074 -1.9068 -3.6491 21 6 0.8777 -0.0548 -4.8065 22 6 0.5193 1.3037 -4.7452 23 6 0.0396 1.9483 -5.8388 24 6 -0.1056 1.2592 -7.0576 25 7 -0.5816 1.8784 -8.1421 26 6 -0.7162 1.2486 -9.2842 27 6 -0.3827 -0.0967 -9.4238 28 6 0.1045 -0.7920 -8.3539 29 6 0.2529 -0.1104 -7.1299 30 6 0.7468 -0.7616 -5.9909 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5134 0.8902 33 1 -0.3633 0.5143 -0.8897 34 1 1.6572 -0.2206 2.1398 35 1 1.6978 -1.7556 1.2385 36 1 3.9143 0.3409 1.3672 37 1 3.9416 -1.2825 2.0999 38 1 6.6741 -1.5249 -2.6369 39 1 3.9416 -1.2849 -2.0984 40 1 3.9142 0.3406 -1.3675 41 1 1.2775 0.8880 -2.4069 42 1 0.6274 1.8414 -3.8150 43 1 -0.2312 2.9917 -5.7739 44 1 -1.1003 1.7862 -10.1386 45 1 -0.5094 -0.5893 -10.3765 46 1 0.3679 -1.8355 -8.4436 47 1 1.0220 -1.8049 -6.0361 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000968191754.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:25:01 Heat of formation + Delta-G solvation = 15.495006 kcal Electronic energy + Delta-G solvation = -29106.563569 eV Core-core repulsion = 25253.467712 eV Total energy + Delta-G solvation = -3853.095857 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -41.97378 -40.99589 -39.29620 -37.68686 -36.15105 -34.81368 -34.47179 -32.86392 -32.00278 -31.12397 -30.27068 -28.98395 -26.24687 -25.67409 -24.87981 -23.87167 -23.07867 -22.65451 -21.88274 -21.05248 -19.35011 -18.83013 -18.76224 -17.95907 -17.10323 -16.88223 -16.70530 -16.06115 -15.66535 -15.54743 -15.39117 -15.29211 -15.16298 -15.00404 -14.87992 -14.49084 -14.43483 -14.10524 -14.01819 -13.56133 -13.30129 -13.12219 -13.05810 -12.77909 -12.73227 -12.58204 -12.48292 -12.32885 -12.15894 -11.90966 -11.64064 -11.62434 -11.49902 -11.21396 -10.97268 -10.57254 -10.54434 -10.17244 -9.83930 -9.36115 -8.70783 -7.90875 -5.36200 -0.82969 -0.36409 0.84790 1.38420 1.40739 1.43312 1.51976 2.07708 2.31028 2.47722 3.06476 3.24221 3.26295 3.52854 3.56582 3.70578 3.78322 3.83814 3.94776 3.98034 4.00739 4.02894 4.16389 4.27758 4.47588 4.49542 4.57245 4.66459 4.73320 4.75645 4.85470 4.92146 4.93880 4.98383 5.00387 5.12041 5.16419 5.18128 5.20691 5.23905 5.30460 5.41278 5.45488 5.48381 5.52872 5.60899 5.73432 5.77514 6.34523 6.55284 6.85557 7.09862 7.22934 7.83628 8.32503 9.13922 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.012704 B = 0.003103 C = 0.002634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2203.459954 B = 9020.766802 C =10627.632332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.085 4.085 3 H 0.081 0.919 4 C -0.116 4.116 5 C 0.135 3.865 6 N -0.609 5.609 7 C -0.262 4.262 8 H 0.069 0.931 9 C -0.052 4.052 10 N -0.930 5.930 11 Si 0.961 3.039 12 H -0.263 1.263 13 H -0.299 1.299 14 H -0.286 1.286 15 C 0.178 3.822 16 C 0.140 3.860 17 H 0.051 0.949 18 N -0.697 5.697 19 C 0.549 3.451 20 O -0.583 6.583 21 C -0.143 4.143 22 C -0.071 4.071 23 C -0.098 4.098 24 C 0.124 3.876 25 N -0.503 5.503 26 C 0.140 3.860 27 C -0.169 4.169 28 C -0.058 4.058 29 C -0.129 4.129 30 C -0.036 4.036 31 H 0.042 0.958 32 H 0.079 0.921 33 H 0.063 0.937 34 H 0.097 0.903 35 H 0.050 0.950 36 H 0.022 0.978 37 H 0.055 0.945 38 H 0.246 0.754 39 H 0.043 0.957 40 H 0.000 1.000 41 H 0.411 0.589 42 H 0.159 0.841 43 H 0.162 0.838 44 H 0.197 0.803 45 H 0.178 0.822 46 H 0.159 0.841 47 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.515 8.785 -10.475 23.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.104 4.104 3 H 0.100 0.900 4 C -0.155 4.155 5 C 0.010 3.990 6 N -0.333 5.333 7 C -0.392 4.392 8 H 0.086 0.914 9 C -0.247 4.247 10 N -0.576 5.576 11 Si 0.789 3.211 12 H -0.187 1.187 13 H -0.226 1.226 14 H -0.212 1.212 15 C 0.051 3.949 16 C 0.034 3.966 17 H 0.069 0.931 18 N -0.349 5.349 19 C 0.338 3.662 20 O -0.464 6.464 21 C -0.146 4.146 22 C -0.091 4.091 23 C -0.116 4.116 24 C 0.003 3.997 25 N -0.212 5.212 26 C -0.032 4.032 27 C -0.188 4.188 28 C -0.084 4.084 29 C -0.131 4.131 30 C -0.056 4.056 31 H 0.061 0.939 32 H 0.098 0.902 33 H 0.082 0.918 34 H 0.116 0.884 35 H 0.068 0.932 36 H 0.040 0.960 37 H 0.074 0.926 38 H 0.055 0.945 39 H 0.061 0.939 40 H 0.018 0.982 41 H 0.250 0.750 42 H 0.176 0.824 43 H 0.180 0.820 44 H 0.214 0.786 45 H 0.195 0.805 46 H 0.176 0.824 47 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -18.387 8.868 -10.371 22.897 hybrid contribution 1.347 -1.603 -0.357 2.124 sum -17.039 7.264 -10.728 21.406 Atomic orbital electron populations 1.21781 0.92933 1.01682 1.02907 1.21281 0.96965 0.99462 0.92735 0.90038 1.21970 0.95645 1.00250 0.97622 1.21184 0.93631 0.96225 0.87944 1.44249 1.48113 1.39883 1.01048 1.19524 1.09578 1.03952 1.06169 0.91380 1.25785 0.98679 1.00312 0.99933 1.70180 1.38474 1.30747 1.18213 0.85302 0.77912 0.80474 0.77417 1.18687 1.22593 1.21220 1.20793 0.89738 0.95034 0.89309 1.21546 0.94827 0.95946 0.84270 0.93102 1.45760 1.64808 1.14809 1.09481 1.18679 0.77425 0.86072 0.84060 1.90785 1.52010 1.18348 1.85305 1.19926 1.05282 0.95849 0.93527 1.21110 0.95837 0.91867 1.00288 1.20914 0.99505 1.01400 0.89802 1.19283 0.95959 0.90300 0.94183 1.68133 1.14588 1.38737 0.99737 1.23771 0.91617 0.92609 0.95205 1.22326 0.99683 0.95754 1.01065 1.21922 0.94118 1.01412 0.90935 1.18965 1.03222 0.95328 0.95558 1.21512 0.93301 1.00061 0.90760 0.93914 0.90218 0.91813 0.88437 0.93164 0.95977 0.92596 0.94472 0.93880 0.98207 0.75032 0.82353 0.82046 0.78650 0.80483 0.82368 0.84851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.03 9.02 71.98 0.65 -2.38 16 2 C -0.09 -2.52 2.27 -10.77 -0.02 -2.55 16 3 H 0.08 2.23 8.14 -2.39 -0.02 2.22 16 4 C -0.12 -3.62 5.36 30.67 0.16 -3.46 16 5 C 0.13 5.50 6.51 86.37 0.56 6.06 16 6 N -0.61 -31.77 3.00 -699.09 -2.09 -33.87 16 7 C -0.26 -15.19 9.59 84.03 0.81 -14.38 16 8 H 0.07 3.83 7.89 -2.91 -0.02 3.80 16 9 C -0.05 -3.07 4.91 84.86 0.42 -2.66 16 10 N -0.93 -58.53 11.19 21.65 0.24 -58.29 16 11 Si 0.96 48.17 29.59 68.60 2.03 50.20 16 12 H -0.26 -12.40 7.11 99.48 0.71 -11.69 16 13 H -0.30 -15.35 7.11 99.48 0.71 -14.65 16 14 H -0.29 -13.95 7.11 99.48 0.71 -13.24 16 15 C 0.18 9.08 4.89 86.36 0.42 9.50 16 16 C 0.14 5.51 2.06 45.07 0.09 5.61 16 17 H 0.05 2.35 7.58 -2.39 -0.02 2.33 16 18 N -0.70 -22.93 4.32 -445.11 -1.92 -24.85 16 19 C 0.55 20.52 7.73 86.77 0.67 21.20 16 20 O -0.58 -27.94 15.97 -3.92 -0.06 -28.01 16 21 C -0.14 -4.22 5.87 -20.10 -0.12 -4.34 16 22 C -0.07 -1.57 9.44 22.27 0.21 -1.36 16 23 C -0.10 -2.07 9.95 22.30 0.22 -1.85 16 24 C 0.12 2.94 6.61 40.36 0.27 3.21 16 25 N -0.50 -10.70 10.33 -188.45 -1.95 -12.65 16 26 C 0.14 1.99 11.15 85.06 0.95 2.94 16 27 C -0.17 -2.09 10.03 22.14 0.22 -1.86 16 28 C -0.06 -1.02 9.89 22.53 0.22 -0.80 16 29 C -0.13 -3.11 5.74 -21.29 -0.12 -3.23 16 30 C -0.04 -1.04 9.35 22.82 0.21 -0.83 16 31 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 32 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 33 H 0.06 1.25 7.36 -2.39 -0.02 1.23 16 34 H 0.10 2.31 8.14 -2.39 -0.02 2.30 16 35 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 36 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 37 H 0.06 2.23 7.94 -2.38 -0.02 2.21 16 38 H 0.25 15.11 8.31 -92.71 -0.77 14.34 16 39 H 0.04 2.65 6.04 -2.39 -0.01 2.63 16 40 H 0.00 0.00 8.14 -2.39 -0.02 -0.02 16 41 H 0.41 9.98 6.30 -92.71 -0.58 9.40 16 42 H 0.16 2.51 6.35 -2.92 -0.02 2.49 16 43 H 0.16 2.61 8.06 -2.91 -0.02 2.59 16 44 H 0.20 1.20 8.06 -2.91 -0.02 1.17 16 45 H 0.18 0.80 8.06 -2.91 -0.02 0.77 16 46 H 0.16 2.13 8.06 -2.91 -0.02 2.11 16 47 H 0.13 3.99 7.62 -2.91 -0.02 3.97 16 Total: -1.00 -82.20 380.65 2.48 -79.73 By element: Atomic # 1 Polarization: 18.51 SS G_CDS: 0.40 Total: 18.91 kcal Atomic # 6 Polarization: 3.00 SS G_CDS: 5.82 Total: 8.82 kcal Atomic # 7 Polarization: -123.93 SS G_CDS: -5.72 Total: -129.65 kcal Atomic # 8 Polarization: -27.94 SS G_CDS: -0.06 Total: -28.01 kcal Atomic # 14 Polarization: 48.17 SS G_CDS: 2.03 Total: 50.20 kcal Total: -82.20 2.48 -79.73 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968191754.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.222 kcal (2) G-P(sol) polarization free energy of solvation -82.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.727 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds