Wall clock time and date at job start Tue Mar 31 2020 22:25:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09002 * 109.44441 * 2 1 4 4 C 1.53039 * 109.46311 * 119.96495 * 2 1 3 5 5 C 1.53187 * 109.31406 * 181.38534 * 4 2 1 6 6 N 1.46927 * 108.77637 * 305.36525 * 5 4 2 7 7 C 1.36927 * 120.63442 * 233.62677 * 6 5 4 8 8 H 1.08006 * 119.99705 * 27.66523 * 7 6 5 9 9 C 1.38813 * 120.00457 * 207.66190 * 7 6 5 10 10 N 1.31613 * 119.99903 * 17.37414 * 9 7 6 11 11 Si 1.86802 * 120.00020 * 197.37268 * 9 7 6 12 12 H 1.48492 * 109.47339 * 0.02562 * 11 9 7 13 13 H 1.48502 * 109.47020 * 120.00010 * 11 9 7 14 14 H 1.48499 * 109.47194 * 239.99809 * 11 9 7 15 15 C 1.46930 * 118.73685 * 53.60878 * 6 5 4 16 16 C 1.53039 * 109.45769 * 240.03764 * 2 1 3 17 17 H 1.08997 * 109.53058 * 58.64200 * 16 2 1 18 18 N 1.46507 * 109.49678 * 298.56176 * 16 2 1 19 19 C 1.34771 * 120.00196 * 155.16617 * 18 16 2 20 20 O 1.21566 * 119.99609 * 359.97438 * 19 18 16 21 21 C 1.47758 * 120.00075 * 180.02562 * 19 18 16 22 22 C 1.40628 * 119.81102 * 359.97438 * 21 19 18 23 23 C 1.35693 * 120.92876 * 180.02562 * 22 21 19 24 24 C 1.40752 * 120.11211 * 359.97438 * 23 22 21 25 25 N 1.33657 * 120.83282 * 179.97438 * 24 23 22 26 26 C 1.31120 * 121.39078 * 180.02562 * 25 24 23 27 27 C 1.39309 * 121.77343 * 0.24716 * 26 25 24 28 28 C 1.36584 * 119.90524 * 359.46589 * 27 26 25 29 29 C 1.40899 * 118.15558 * 0.53833 * 28 27 26 30 30 C 1.38558 * 119.80486 * 179.97438 * 21 19 18 31 31 H 1.09007 * 109.46924 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.46694 * 299.96242 * 1 2 3 33 33 H 1.08993 * 109.47334 * 59.96774 * 1 2 3 34 34 H 1.09003 * 109.49344 * 61.43469 * 4 2 1 35 35 H 1.08999 * 109.49582 * 301.34189 * 4 2 1 36 36 H 1.08998 * 109.58766 * 185.57991 * 5 4 2 37 37 H 1.09003 * 109.58510 * 65.15361 * 5 4 2 38 38 H 0.97001 * 120.00349 * 179.97438 * 10 9 7 39 39 H 1.08997 * 109.58825 * 186.60392 * 15 6 5 40 40 H 1.09000 * 109.59072 * 66.17811 * 15 6 5 41 41 H 0.97000 * 119.99953 * 335.16127 * 18 16 2 42 42 H 1.08006 * 119.53002 * 359.97438 * 22 21 19 43 43 H 1.08008 * 119.94717 * 180.02562 * 23 22 21 44 44 H 1.08007 * 119.10804 * 179.97438 * 26 25 24 45 45 H 1.07997 * 120.05132 * 179.72563 * 27 26 25 46 46 H 1.07999 * 120.91972 * 180.22529 * 28 27 26 47 47 H 1.07997 * 120.29574 * 0.03539 * 30 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8929 1.0278 0.0000 4 6 2.0400 -0.7207 1.2501 5 6 3.5715 -0.6885 1.2642 6 7 4.0679 -1.2488 -0.0001 7 6 4.9758 -2.2738 -0.0002 8 1 5.0087 -2.9661 0.8282 9 6 5.8539 -2.4232 -1.0648 10 7 6.0603 -1.4215 -1.8932 11 14 6.7427 -4.0461 -1.3218 12 1 6.3397 -5.0045 -0.2616 13 1 6.3850 -4.6010 -2.6520 14 1 8.2093 -3.8230 -1.2566 15 6 3.5714 -0.6885 -1.2643 16 6 2.0399 -0.7207 -1.2501 17 1 1.6572 -0.2212 -2.1402 18 7 1.5802 -2.1117 -1.2343 19 6 1.4547 -2.7931 -2.3903 20 8 1.7226 -2.2534 -3.4461 21 6 0.9906 -4.1958 -2.3743 22 6 0.6813 -4.8160 -1.1507 23 6 0.2536 -6.1032 -1.1096 24 6 0.1128 -6.8388 -2.3013 25 7 -0.3067 -8.1076 -2.2775 26 6 -0.4413 -8.8032 -3.3808 27 6 -0.1504 -8.2603 -4.6304 28 6 0.2774 -6.9668 -4.7280 29 6 0.4213 -6.2227 -3.5402 30 6 0.8626 -4.8925 -3.5652 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5133 0.8903 33 1 -0.3633 0.5143 -0.8896 34 1 1.6979 -1.7556 1.2382 35 1 1.6573 -0.2207 2.1398 36 1 3.9418 -1.2844 2.0983 37 1 3.9143 0.3410 1.3673 38 1 6.6742 -1.5258 -2.6370 39 1 3.9416 -1.2844 -2.0985 40 1 3.9142 0.3410 -1.3675 41 1 1.3661 -2.5422 -0.3918 42 1 0.7864 -4.2602 -0.2306 43 1 0.0201 -6.5637 -0.1610 44 1 -0.7828 -9.8260 -3.3188 45 1 -0.2670 -8.8599 -5.5210 46 1 0.5040 -6.5283 -5.6886 47 1 1.1010 -4.4150 -4.5040 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000968191756.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:25:04 Heat of formation + Delta-G solvation = 18.813783 kcal Electronic energy + Delta-G solvation = -29899.395034 eV Core-core repulsion = 26046.443089 eV Total energy + Delta-G solvation = -3852.951945 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -41.96506 -41.04018 -39.25658 -37.65461 -35.96150 -34.62313 -34.31496 -32.86513 -31.98203 -31.11997 -30.49939 -28.92054 -26.23406 -25.57856 -24.87195 -23.84417 -23.12543 -22.76096 -22.17499 -20.32610 -19.55064 -18.86704 -18.63113 -17.82016 -17.06390 -16.80432 -16.59798 -16.01373 -15.73786 -15.52853 -15.45190 -15.31137 -15.03267 -14.94902 -14.71785 -14.60184 -14.44178 -14.12547 -14.01035 -13.59380 -13.17044 -13.10215 -13.00211 -12.78310 -12.73489 -12.60892 -12.47525 -12.47240 -12.21206 -11.94609 -11.62185 -11.56101 -11.32236 -11.06978 -10.98476 -10.55924 -10.54028 -10.06027 -9.80392 -9.35004 -8.65139 -7.87557 -5.31223 -0.81287 -0.35872 0.85933 1.36190 1.40265 1.43179 1.47832 2.19019 2.39734 2.46694 3.07135 3.25724 3.28603 3.53157 3.65857 3.68332 3.73222 3.88557 3.95459 3.98788 4.00708 4.03941 4.13332 4.27516 4.49689 4.52172 4.67832 4.71789 4.74180 4.80269 4.86204 4.90774 4.95889 4.96680 5.00455 5.09777 5.17586 5.17970 5.24461 5.25449 5.28723 5.46537 5.47225 5.51942 5.60156 5.70695 5.71820 5.74838 6.38513 6.62499 6.85938 7.13885 7.28545 7.87558 8.37812 9.17520 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010532 B = 0.004157 C = 0.003445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2657.953466 B = 6734.687177 C = 8125.605823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.087 4.087 3 H 0.078 0.922 4 C -0.117 4.117 5 C 0.135 3.865 6 N -0.600 5.600 7 C -0.246 4.246 8 H 0.071 0.929 9 C -0.048 4.048 10 N -0.933 5.933 11 Si 0.947 3.053 12 H -0.261 1.261 13 H -0.304 1.304 14 H -0.290 1.290 15 C 0.170 3.830 16 C 0.136 3.864 17 H 0.065 0.935 18 N -0.680 5.680 19 C 0.550 3.450 20 O -0.588 6.588 21 C -0.144 4.144 22 C -0.072 4.072 23 C -0.100 4.100 24 C 0.123 3.877 25 N -0.504 5.504 26 C 0.139 3.861 27 C -0.169 4.169 28 C -0.058 4.058 29 C -0.129 4.129 30 C -0.038 4.038 31 H 0.056 0.944 32 H 0.077 0.923 33 H 0.049 0.951 34 H 0.062 0.938 35 H 0.093 0.907 36 H 0.058 0.942 37 H 0.014 0.986 38 H 0.244 0.756 39 H 0.048 0.952 40 H -0.002 1.002 41 H 0.406 0.594 42 H 0.150 0.850 43 H 0.159 0.841 44 H 0.197 0.803 45 H 0.179 0.821 46 H 0.161 0.839 47 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.241 -10.179 0.744 20.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.106 4.106 3 H 0.096 0.904 4 C -0.155 4.155 5 C 0.010 3.990 6 N -0.323 5.323 7 C -0.376 4.376 8 H 0.088 0.912 9 C -0.244 4.244 10 N -0.579 5.579 11 Si 0.776 3.224 12 H -0.185 1.185 13 H -0.232 1.232 14 H -0.218 1.218 15 C 0.043 3.957 16 C 0.030 3.970 17 H 0.083 0.917 18 N -0.330 5.330 19 C 0.338 3.662 20 O -0.470 6.470 21 C -0.147 4.147 22 C -0.092 4.092 23 C -0.118 4.118 24 C 0.002 3.998 25 N -0.213 5.213 26 C -0.033 4.033 27 C -0.188 4.188 28 C -0.083 4.083 29 C -0.131 4.131 30 C -0.058 4.058 31 H 0.075 0.925 32 H 0.096 0.904 33 H 0.068 0.932 34 H 0.081 0.919 35 H 0.111 0.889 36 H 0.076 0.924 37 H 0.032 0.968 38 H 0.053 0.947 39 H 0.066 0.934 40 H 0.016 0.984 41 H 0.244 0.756 42 H 0.168 0.832 43 H 0.177 0.823 44 H 0.214 0.786 45 H 0.197 0.803 46 H 0.178 0.822 47 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -18.105 -10.047 0.842 20.723 hybrid contribution 1.504 -0.072 -1.157 1.899 sum -16.602 -10.120 -0.315 19.445 Atomic orbital electron populations 1.21772 0.93034 1.02171 1.02328 1.21281 0.96881 0.99209 0.93266 0.90380 1.21973 0.95580 1.00461 0.97534 1.21164 0.93738 0.95970 0.88123 1.44183 1.48042 1.39426 1.00677 1.19458 1.09183 1.03446 1.05542 0.91163 1.25632 0.98799 0.99531 1.00407 1.70165 1.38710 1.30668 1.18399 0.85499 0.78170 0.81433 0.77274 1.18466 1.23159 1.21751 1.20882 0.90022 0.95077 0.89686 1.21534 0.95277 0.81381 0.98842 0.91705 1.45623 1.65456 1.13605 1.08330 1.18538 0.77226 0.86440 0.84028 1.90717 1.53048 1.70888 1.32338 1.20009 1.05238 0.93892 0.95532 1.21060 0.95987 0.95283 0.96862 1.20882 0.99774 0.93208 0.97954 1.19235 0.96382 0.91208 0.92952 1.68125 1.14495 1.05844 1.32814 1.23780 0.91340 1.00829 0.87371 1.22330 0.99949 0.95727 1.00791 1.21928 0.93980 0.94748 0.97675 1.18981 1.03442 0.94873 0.95773 1.21513 0.93404 0.92592 0.98270 0.92527 0.90405 0.93189 0.91941 0.88884 0.92355 0.96809 0.94657 0.93359 0.98377 0.75569 0.83248 0.82307 0.78607 0.80330 0.82171 0.84545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.98 9.05 71.98 0.65 -2.32 16 2 C -0.09 -2.51 2.48 -10.77 -0.03 -2.54 16 3 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 4 C -0.12 -3.22 5.20 30.67 0.16 -3.06 16 5 C 0.13 5.11 6.52 86.36 0.56 5.67 16 6 N -0.60 -29.08 2.91 -699.09 -2.04 -31.12 16 7 C -0.25 -13.37 9.58 84.04 0.81 -12.57 16 8 H 0.07 3.68 7.89 -2.91 -0.02 3.66 16 9 C -0.05 -2.79 4.91 84.86 0.42 -2.37 16 10 N -0.93 -57.99 11.19 21.65 0.24 -57.75 16 11 Si 0.95 47.09 29.59 68.60 2.03 49.12 16 12 H -0.26 -12.08 7.11 99.48 0.71 -11.37 16 13 H -0.30 -15.69 7.11 99.48 0.71 -14.99 16 14 H -0.29 -14.33 7.11 99.48 0.71 -13.62 16 15 C 0.17 8.48 4.91 86.36 0.42 8.90 16 16 C 0.14 5.19 2.24 45.07 0.10 5.29 16 17 H 0.06 2.63 7.58 -2.39 -0.02 2.62 16 18 N -0.68 -24.18 4.20 -445.11 -1.87 -26.05 16 19 C 0.55 21.80 7.73 86.76 0.67 22.47 16 20 O -0.59 -28.03 15.97 -3.92 -0.06 -28.10 16 21 C -0.14 -4.78 5.87 -20.10 -0.12 -4.90 16 22 C -0.07 -1.94 9.44 22.26 0.21 -1.73 16 23 C -0.10 -2.53 9.95 22.29 0.22 -2.31 16 24 C 0.12 3.32 6.61 40.35 0.27 3.59 16 25 N -0.50 -12.06 10.33 -188.45 -1.95 -14.01 16 26 C 0.14 2.26 11.14 85.06 0.95 3.21 16 27 C -0.17 -2.37 10.03 22.14 0.22 -2.15 16 28 C -0.06 -1.12 9.89 22.53 0.22 -0.90 16 29 C -0.13 -3.44 5.74 -21.29 -0.12 -3.56 16 30 C -0.04 -1.18 9.35 22.82 0.21 -0.97 16 31 H 0.06 1.19 7.54 -2.38 -0.02 1.18 16 32 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 33 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 34 H 0.06 1.64 6.40 -2.39 -0.02 1.63 16 35 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 36 H 0.06 2.14 7.93 -2.39 -0.02 2.12 16 37 H 0.01 0.54 8.14 -2.39 -0.02 0.52 16 38 H 0.24 14.97 8.31 -92.71 -0.77 14.20 16 39 H 0.05 2.90 6.03 -2.39 -0.01 2.88 16 40 H 0.00 -0.09 8.14 -2.39 -0.02 -0.11 16 41 H 0.41 12.26 4.62 -92.71 -0.43 11.83 16 42 H 0.15 3.35 6.35 -2.91 -0.02 3.33 16 43 H 0.16 3.26 8.06 -2.91 -0.02 3.24 16 44 H 0.20 1.56 8.06 -2.91 -0.02 1.53 16 45 H 0.18 1.04 8.06 -2.91 -0.02 1.01 16 46 H 0.16 2.37 8.06 -2.91 -0.02 2.34 16 47 H 0.14 4.31 7.62 -2.91 -0.02 4.29 16 Total: -1.00 -77.96 377.50 2.75 -75.21 By element: Atomic # 1 Polarization: 22.38 SS G_CDS: 0.56 Total: 22.94 kcal Atomic # 6 Polarization: 3.92 SS G_CDS: 5.83 Total: 9.75 kcal Atomic # 7 Polarization: -123.32 SS G_CDS: -5.61 Total: -128.93 kcal Atomic # 8 Polarization: -28.03 SS G_CDS: -0.06 Total: -28.10 kcal Atomic # 14 Polarization: 47.09 SS G_CDS: 2.03 Total: 49.12 kcal Total: -77.96 2.75 -75.21 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968191756.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.026 kcal (2) G-P(sol) polarization free energy of solvation -77.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.212 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds