Wall clock time and date at job start Tue Mar 31 2020 22:24:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09006 * 109.46148 * 2 1 4 4 C 1.53073 * 109.45398 * 119.81410 * 2 1 3 5 5 C 1.53198 * 109.29489 * 181.23972 * 4 2 1 6 6 N 1.46922 * 108.89220 * 305.58040 * 5 4 2 7 7 C 1.36938 * 120.62657 * 233.55496 * 6 5 4 8 8 H 1.07993 * 120.00147 * 27.68222 * 7 6 5 9 9 C 1.38816 * 119.99905 * 207.68234 * 7 6 5 10 10 N 1.31620 * 119.99978 * 17.35011 * 9 7 6 11 11 Si 1.86803 * 120.00186 * 197.35375 * 9 7 6 12 12 H 1.48502 * 109.47014 * 59.99798 * 11 9 7 13 13 H 1.48494 * 109.47287 * 179.97438 * 11 9 7 14 14 H 1.48495 * 109.47070 * 300.00230 * 11 9 7 15 15 C 1.46926 * 118.74192 * 53.54358 * 6 5 4 16 16 C 1.53043 * 109.45907 * 240.02710 * 2 1 3 17 17 H 1.08998 * 109.52704 * 58.64973 * 16 2 1 18 18 N 1.46499 * 109.49783 * 298.56316 * 16 2 1 19 19 C 1.34778 * 119.99821 * 155.15806 * 18 16 2 20 20 O 1.21567 * 120.00162 * 0.02562 * 19 18 16 21 21 C 1.47757 * 120.00204 * 180.02562 * 19 18 16 22 22 C 1.40608 * 120.26632 * 0.02562 * 21 19 18 23 23 N 1.30795 * 121.53565 * 179.97438 * 22 21 19 24 24 C 1.33820 * 121.72334 * 0.02562 * 23 22 21 25 25 C 1.40530 * 120.81700 * 180.02562 * 24 23 22 26 26 C 1.36136 * 119.80868 * 179.97438 * 25 24 23 27 27 C 1.39331 * 121.09100 * 359.97438 * 26 25 24 28 28 C 1.36147 * 120.83451 * 0.02562 * 27 26 25 29 29 C 1.40539 * 119.61769 * 359.97438 * 28 27 26 30 30 C 1.39004 * 120.27295 * 179.73025 * 21 19 18 31 31 H 1.09005 * 109.47026 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.47384 * 299.97275 * 1 2 3 33 33 H 1.09003 * 109.47235 * 59.97345 * 1 2 3 34 34 H 1.09006 * 109.38523 * 61.37252 * 4 2 1 35 35 H 1.08994 * 109.62283 * 301.26362 * 4 2 1 36 36 H 1.09000 * 109.58634 * 185.72091 * 5 4 2 37 37 H 1.08999 * 109.58492 * 65.44498 * 5 4 2 38 38 H 0.97006 * 119.99919 * 180.02562 * 10 9 7 39 39 H 1.08997 * 109.58874 * 66.16922 * 15 6 5 40 40 H 1.08996 * 109.58552 * 186.60555 * 15 6 5 41 41 H 0.97001 * 120.00352 * 335.16743 * 18 16 2 42 42 H 1.08003 * 119.22766 * 359.97438 * 22 21 19 43 43 H 1.07993 * 120.09548 * 359.97438 * 25 24 23 44 44 H 1.08005 * 119.45225 * 179.97438 * 26 25 24 45 45 H 1.08003 * 119.58564 * 180.02562 * 27 26 25 46 46 H 1.08001 * 120.19015 * 179.97438 * 28 27 26 47 47 H 1.08001 * 121.01423 * 0.02562 * 30 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8931 1.0278 0.0000 4 6 2.0397 -0.7176 1.2523 5 6 3.5714 -0.6884 1.2643 6 7 4.0678 -1.2488 0.0001 7 6 4.9757 -2.2740 0.0003 8 1 5.0084 -2.9662 0.8285 9 6 5.8541 -2.4234 -1.0642 10 7 6.0603 -1.4217 -1.8928 11 14 6.7433 -4.0460 -1.3208 12 1 5.7479 -5.1295 -1.5223 13 1 7.6166 -3.9480 -2.5178 14 1 7.5717 -4.3507 -0.1267 15 6 3.5714 -0.6887 -1.2642 16 6 2.0398 -0.7209 -1.2500 17 1 1.6572 -0.2215 -2.1401 18 7 1.5801 -2.1118 -1.2340 19 6 1.4546 -2.7934 -2.3899 20 8 1.7233 -2.2542 -3.4458 21 6 0.9904 -4.1961 -2.3739 22 6 0.6776 -4.8252 -1.1560 23 7 0.2642 -6.0654 -1.1130 24 6 0.1186 -6.7975 -2.2236 25 6 -0.3275 -8.1283 -2.1553 26 6 -0.4688 -8.8542 -3.2983 27 6 -0.1783 -8.2999 -4.5432 28 6 0.2562 -7.0141 -4.6504 29 6 0.4136 -6.2353 -3.4912 30 6 0.8536 -4.9026 -3.5632 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5134 0.8902 33 1 -0.3634 0.5143 -0.8898 34 1 1.6957 -1.7519 1.2419 35 1 1.6593 -0.2160 2.1420 36 1 3.9417 -1.2842 2.0985 37 1 3.9164 0.3403 1.3685 38 1 6.6739 -1.5262 -2.6369 39 1 3.9143 0.3408 -1.3674 40 1 3.9416 -1.2848 -2.0983 41 1 1.3659 -2.5422 -0.3915 42 1 0.7811 -4.2714 -0.2345 43 1 -0.5576 -8.5739 -1.1989 44 1 -0.8116 -9.8767 -3.2391 45 1 -0.2994 -8.8978 -5.4345 46 1 0.4787 -6.5951 -5.6206 47 1 1.0827 -4.4427 -4.5132 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000968361542.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:24:50 Heat of formation + Delta-G solvation = 38.577434 kcal Electronic energy + Delta-G solvation = -29910.212085 eV Core-core repulsion = 26058.117156 eV Total energy + Delta-G solvation = -3852.094928 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -40.96911 -39.55018 -37.72681 -36.84131 -34.18139 -33.46588 -32.93473 -31.12653 -30.80026 -30.15913 -29.01856 -27.33149 -24.81526 -24.12474 -23.94970 -22.26622 -22.16506 -21.12535 -20.91261 -18.76282 -18.35099 -17.84174 -17.12672 -16.63748 -15.88310 -15.13397 -15.01075 -14.69390 -14.60897 -14.36396 -14.08278 -13.93963 -13.75712 -13.61933 -13.51405 -13.28077 -13.07819 -12.93722 -12.59108 -11.98993 -11.90435 -11.87594 -11.63905 -11.59359 -11.39709 -11.11665 -10.91726 -10.71513 -10.55696 -10.51388 -10.24460 -9.98920 -9.89820 -9.68601 -9.51015 -9.28689 -8.91011 -8.47466 -8.44988 -8.33547 -6.65196 -5.76702 -3.19161 0.18656 0.55648 1.80545 2.57820 3.38750 3.44696 3.45564 3.46582 3.62235 4.09156 4.13927 4.46303 4.50829 4.62827 4.76220 4.76772 4.95970 4.99384 5.11867 5.21292 5.22132 5.30757 5.33483 5.42077 5.55025 5.64567 5.76835 5.80932 5.86463 5.91688 5.94432 5.99543 6.13781 6.16310 6.23426 6.27498 6.34679 6.37914 6.43286 6.52515 6.62995 6.65370 6.74306 6.86333 6.96833 7.34756 7.66390 7.77918 7.81068 8.01260 8.46826 8.67553 9.22004 9.86219 10.41500 11.31176 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010523 B = 0.004175 C = 0.003459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2660.150514 B = 6705.245325 C = 8092.989005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.094 4.094 3 H 0.079 0.921 4 C -0.129 4.129 5 C 0.142 3.858 6 N -0.587 5.587 7 C -0.255 4.255 8 H 0.064 0.936 9 C 0.009 3.991 10 N -0.897 5.897 11 Si 0.895 3.105 12 H -0.285 1.285 13 H -0.290 1.290 14 H -0.283 1.283 15 C 0.160 3.840 16 C 0.126 3.874 17 H 0.078 0.922 18 N -0.689 5.689 19 C 0.561 3.439 20 O -0.540 6.540 21 C -0.178 4.178 22 C 0.167 3.833 23 N -0.478 5.478 24 C 0.138 3.862 25 C -0.097 4.097 26 C -0.097 4.097 27 C -0.125 4.125 28 C -0.085 4.085 29 C -0.112 4.112 30 C 0.006 3.994 31 H 0.050 0.950 32 H 0.050 0.950 33 H 0.050 0.950 34 H 0.053 0.947 35 H 0.055 0.945 36 H 0.054 0.946 37 H 0.018 0.982 38 H 0.254 0.746 39 H 0.026 0.974 40 H 0.097 0.903 41 H 0.394 0.606 42 H 0.161 0.839 43 H 0.136 0.864 44 H 0.129 0.871 45 H 0.128 0.872 46 H 0.133 0.867 47 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.737 -7.858 -0.844 17.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.113 4.113 3 H 0.097 0.903 4 C -0.169 4.169 5 C 0.015 3.985 6 N -0.310 5.310 7 C -0.384 4.384 8 H 0.081 0.919 9 C -0.190 4.190 10 N -0.541 5.541 11 Si 0.725 3.275 12 H -0.212 1.212 13 H -0.216 1.216 14 H -0.209 1.209 15 C 0.033 3.967 16 C 0.020 3.980 17 H 0.096 0.904 18 N -0.339 5.339 19 C 0.347 3.653 20 O -0.419 6.419 21 C -0.183 4.183 22 C -0.007 4.007 23 N -0.186 5.186 24 C 0.017 3.983 25 C -0.116 4.116 26 C -0.117 4.117 27 C -0.143 4.143 28 C -0.103 4.103 29 C -0.114 4.114 30 C -0.021 4.021 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.072 0.928 35 H 0.074 0.926 36 H 0.072 0.928 37 H 0.036 0.964 38 H 0.064 0.936 39 H 0.044 0.956 40 H 0.116 0.884 41 H 0.230 0.770 42 H 0.178 0.822 43 H 0.154 0.846 44 H 0.147 0.853 45 H 0.146 0.854 46 H 0.151 0.849 47 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -15.619 -7.919 -0.947 17.538 hybrid contribution 0.785 -0.637 -0.513 1.134 sum -14.835 -8.556 -1.460 17.187 Atomic orbital electron populations 1.21857 0.95954 1.01367 1.01043 1.21325 0.94611 0.99983 0.95409 0.90305 1.22094 0.99269 0.99373 0.96137 1.20931 0.90664 0.96590 0.90277 1.43972 1.48273 1.39566 0.99145 1.19040 1.10078 1.03111 1.06194 0.91876 1.24973 0.97142 0.97079 0.99855 1.69990 1.37437 1.28946 1.17710 0.86488 0.79386 0.84259 0.77374 1.21186 1.21597 1.20878 1.21213 0.86556 0.97864 0.91049 1.21852 0.99059 0.80002 0.97066 0.90403 1.45740 1.66158 1.14190 1.07862 1.17788 0.78108 0.84867 0.84565 1.90759 1.50921 1.69480 1.30728 1.21127 1.05385 0.96739 0.95098 1.23063 0.90353 0.90379 0.96871 1.67942 1.14067 1.06646 1.29911 1.19013 0.96586 0.94594 0.88083 1.20816 0.99472 0.91850 0.99463 1.20943 0.98483 1.00059 0.92171 1.20909 0.99964 0.95471 0.97935 1.21082 0.97703 0.94193 0.97352 1.18843 1.02818 0.94854 0.94872 1.21966 0.89593 0.91477 0.99060 0.93084 0.93069 0.93060 0.92840 0.92616 0.92789 0.96406 0.93555 0.95576 0.88441 0.77000 0.82194 0.84613 0.85277 0.85428 0.84930 0.82950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.79 9.05 37.15 0.34 -1.45 16 2 C -0.09 -1.42 2.47 -90.56 -0.22 -1.64 16 3 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 4 C -0.13 -1.97 5.21 -26.59 -0.14 -2.11 16 5 C 0.14 2.76 6.51 -3.71 -0.02 2.73 16 6 N -0.59 -13.94 2.91 -172.32 -0.50 -14.44 16 7 C -0.25 -6.83 9.59 -15.06 -0.14 -6.97 16 8 H 0.06 1.67 7.89 -52.49 -0.41 1.25 16 9 C 0.01 0.25 4.91 -17.43 -0.09 0.16 16 10 N -0.90 -26.37 11.19 55.49 0.62 -25.74 16 11 Si 0.90 22.32 29.59 -169.99 -5.03 17.29 16 12 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 13 H -0.29 -7.33 7.11 56.52 0.40 -6.92 16 14 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 15 C 0.16 3.75 4.91 -3.71 -0.02 3.73 16 16 C 0.13 2.32 2.24 -67.81 -0.15 2.17 16 17 H 0.08 1.48 7.58 -51.93 -0.39 1.09 16 18 N -0.69 -12.00 4.21 -54.66 -0.23 -12.23 16 19 C 0.56 10.55 7.74 -12.37 -0.10 10.46 16 20 O -0.54 -11.87 16.05 5.31 0.09 -11.78 16 21 C -0.18 -2.92 5.89 -104.83 -0.62 -3.54 16 22 C 0.17 2.51 10.68 -17.10 -0.18 2.32 16 23 N -0.48 -7.30 10.30 -10.67 -0.11 -7.41 16 24 C 0.14 1.97 6.61 -84.79 -0.56 1.41 16 25 C -0.10 -1.11 9.97 -39.47 -0.39 -1.50 16 26 C -0.10 -0.88 9.94 -39.93 -0.40 -1.28 16 27 C -0.12 -1.13 9.96 -39.93 -0.40 -1.53 16 28 C -0.08 -0.91 9.77 -39.47 -0.39 -1.30 16 29 C -0.11 -1.54 5.74 -106.82 -0.61 -2.15 16 30 C 0.01 0.09 9.46 -38.43 -0.36 -0.28 16 31 H 0.05 0.61 7.54 -51.93 -0.39 0.22 16 32 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 33 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 34 H 0.05 0.79 6.41 -51.93 -0.33 0.46 16 35 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 36 H 0.05 1.04 7.93 -51.93 -0.41 0.63 16 37 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 38 H 0.25 7.35 8.31 -40.82 -0.34 7.01 16 39 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.10 2.71 6.04 -51.93 -0.31 2.40 16 41 H 0.39 6.10 4.67 -40.82 -0.19 5.91 16 42 H 0.16 2.06 6.37 -52.48 -0.33 1.72 16 43 H 0.14 1.34 8.06 -52.49 -0.42 0.92 16 44 H 0.13 0.79 8.06 -52.48 -0.42 0.37 16 45 H 0.13 0.80 8.06 -52.48 -0.42 0.37 16 46 H 0.13 1.15 8.06 -52.49 -0.42 0.72 16 47 H 0.15 2.17 7.70 -52.49 -0.40 1.76 16 LS Contribution 377.74 15.07 5.69 5.69 Total: -1.00 -32.68 377.74 -10.48 -43.16 By element: Atomic # 1 Polarization: 12.77 SS G_CDS: -6.55 Total: 6.22 kcal Atomic # 6 Polarization: 3.70 SS G_CDS: -4.46 Total: -0.76 kcal Atomic # 7 Polarization: -59.60 SS G_CDS: -0.22 Total: -59.83 kcal Atomic # 8 Polarization: -11.87 SS G_CDS: 0.09 Total: -11.78 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.03 Total: 17.29 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -32.68 -10.48 -43.16 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968361542.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.737 kcal (2) G-P(sol) polarization free energy of solvation -32.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.160 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds