Wall clock time and date at job start Tue Mar 31 2020 22:24:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09006 * 109.46148 * 2 1 4 4 C 1.53073 * 109.45398 * 119.81410 * 2 1 3 5 5 C 1.53198 * 109.29489 * 181.23972 * 4 2 1 6 6 N 1.46922 * 108.89220 * 305.58040 * 5 4 2 7 7 C 1.36938 * 120.62657 * 233.55496 * 6 5 4 8 8 H 1.07993 * 120.00147 * 27.68222 * 7 6 5 9 9 C 1.38816 * 119.99905 * 207.68234 * 7 6 5 10 10 N 1.31620 * 119.99978 * 17.35011 * 9 7 6 11 11 Si 1.86803 * 120.00186 * 197.35375 * 9 7 6 12 12 H 1.48502 * 109.47014 * 59.99798 * 11 9 7 13 13 H 1.48494 * 109.47287 * 179.97438 * 11 9 7 14 14 H 1.48495 * 109.47070 * 300.00230 * 11 9 7 15 15 C 1.46926 * 118.74192 * 53.54358 * 6 5 4 16 16 C 1.53043 * 109.45907 * 240.02710 * 2 1 3 17 17 H 1.08998 * 109.52704 * 58.64973 * 16 2 1 18 18 N 1.46499 * 109.49783 * 298.56316 * 16 2 1 19 19 C 1.34778 * 119.99821 * 155.15806 * 18 16 2 20 20 O 1.21567 * 120.00162 * 0.02562 * 19 18 16 21 21 C 1.47757 * 120.00204 * 180.02562 * 19 18 16 22 22 C 1.40608 * 120.26632 * 0.02562 * 21 19 18 23 23 N 1.30795 * 121.53565 * 179.97438 * 22 21 19 24 24 C 1.33820 * 121.72334 * 0.02562 * 23 22 21 25 25 C 1.40530 * 120.81700 * 180.02562 * 24 23 22 26 26 C 1.36136 * 119.80868 * 179.97438 * 25 24 23 27 27 C 1.39331 * 121.09100 * 359.97438 * 26 25 24 28 28 C 1.36147 * 120.83451 * 0.02562 * 27 26 25 29 29 C 1.40539 * 119.61769 * 359.97438 * 28 27 26 30 30 C 1.39004 * 120.27295 * 179.73025 * 21 19 18 31 31 H 1.09005 * 109.47026 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.47384 * 299.97275 * 1 2 3 33 33 H 1.09003 * 109.47235 * 59.97345 * 1 2 3 34 34 H 1.09006 * 109.38523 * 61.37252 * 4 2 1 35 35 H 1.08994 * 109.62283 * 301.26362 * 4 2 1 36 36 H 1.09000 * 109.58634 * 185.72091 * 5 4 2 37 37 H 1.08999 * 109.58492 * 65.44498 * 5 4 2 38 38 H 0.97006 * 119.99919 * 180.02562 * 10 9 7 39 39 H 1.08997 * 109.58874 * 66.16922 * 15 6 5 40 40 H 1.08996 * 109.58552 * 186.60555 * 15 6 5 41 41 H 0.97001 * 120.00352 * 335.16743 * 18 16 2 42 42 H 1.08003 * 119.22766 * 359.97438 * 22 21 19 43 43 H 1.07993 * 120.09548 * 359.97438 * 25 24 23 44 44 H 1.08005 * 119.45225 * 179.97438 * 26 25 24 45 45 H 1.08003 * 119.58564 * 180.02562 * 27 26 25 46 46 H 1.08001 * 120.19015 * 179.97438 * 28 27 26 47 47 H 1.08001 * 121.01423 * 0.02562 * 30 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8931 1.0278 0.0000 4 6 2.0397 -0.7176 1.2523 5 6 3.5714 -0.6884 1.2643 6 7 4.0678 -1.2488 0.0001 7 6 4.9757 -2.2740 0.0003 8 1 5.0084 -2.9662 0.8285 9 6 5.8541 -2.4234 -1.0642 10 7 6.0603 -1.4217 -1.8928 11 14 6.7433 -4.0460 -1.3208 12 1 5.7479 -5.1295 -1.5223 13 1 7.6166 -3.9480 -2.5178 14 1 7.5717 -4.3507 -0.1267 15 6 3.5714 -0.6887 -1.2642 16 6 2.0398 -0.7209 -1.2500 17 1 1.6572 -0.2215 -2.1401 18 7 1.5801 -2.1118 -1.2340 19 6 1.4546 -2.7934 -2.3899 20 8 1.7233 -2.2542 -3.4458 21 6 0.9904 -4.1961 -2.3739 22 6 0.6776 -4.8252 -1.1560 23 7 0.2642 -6.0654 -1.1130 24 6 0.1186 -6.7975 -2.2236 25 6 -0.3275 -8.1283 -2.1553 26 6 -0.4688 -8.8542 -3.2983 27 6 -0.1783 -8.2999 -4.5432 28 6 0.2562 -7.0141 -4.6504 29 6 0.4136 -6.2353 -3.4912 30 6 0.8536 -4.9026 -3.5632 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5134 0.8902 33 1 -0.3634 0.5143 -0.8898 34 1 1.6957 -1.7519 1.2419 35 1 1.6593 -0.2160 2.1420 36 1 3.9417 -1.2842 2.0985 37 1 3.9164 0.3403 1.3685 38 1 6.6739 -1.5262 -2.6369 39 1 3.9143 0.3408 -1.3674 40 1 3.9416 -1.2848 -2.0983 41 1 1.3659 -2.5422 -0.3915 42 1 0.7811 -4.2714 -0.2345 43 1 -0.5576 -8.5739 -1.1989 44 1 -0.8116 -9.8767 -3.2391 45 1 -0.2994 -8.8978 -5.4345 46 1 0.4787 -6.5951 -5.6206 47 1 1.0827 -4.4427 -4.5132 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000968361542.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:24:49 Heat of formation + Delta-G solvation = 18.931945 kcal Electronic energy + Delta-G solvation = -29911.063977 eV Core-core repulsion = 26058.117156 eV Total energy + Delta-G solvation = -3852.946821 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -42.05513 -40.94292 -39.16329 -37.89594 -35.96024 -34.51743 -34.43674 -32.86770 -32.00958 -31.08877 -30.48847 -28.91379 -26.18095 -25.51965 -25.12727 -23.75184 -23.13019 -22.75953 -22.18200 -20.33268 -19.48406 -18.92807 -18.68485 -18.04275 -17.00669 -16.84345 -16.51552 -16.06247 -15.74944 -15.58489 -15.49533 -15.28979 -15.10692 -14.88156 -14.78564 -14.55369 -14.42859 -14.18547 -14.07689 -13.57103 -13.14450 -13.03010 -12.80304 -12.75062 -12.71535 -12.62800 -12.49299 -12.44366 -12.28075 -11.95758 -11.62080 -11.55603 -11.38685 -11.18986 -11.06333 -10.59335 -10.52092 -10.07630 -9.81707 -9.31995 -8.64696 -7.87569 -5.31069 -0.83787 -0.44913 0.81926 1.36639 1.40599 1.44946 1.52513 2.12966 2.32496 2.46334 3.03439 3.12888 3.28107 3.52280 3.58994 3.68712 3.69560 3.77396 3.87623 3.98026 4.00097 4.13740 4.19231 4.30831 4.39872 4.52503 4.66934 4.68400 4.72159 4.75952 4.85424 4.91658 4.93758 4.97225 5.03140 5.10139 5.18628 5.25437 5.27457 5.32577 5.39368 5.43437 5.47626 5.51820 5.59509 5.69771 5.72145 5.82918 6.38526 6.57111 6.70720 7.14136 7.23735 7.87893 8.37874 9.17147 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010523 B = 0.004175 C = 0.003459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2660.150514 B = 6705.245325 C = 8092.989005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.087 4.087 3 H 0.079 0.921 4 C -0.117 4.117 5 C 0.135 3.865 6 N -0.600 5.600 7 C -0.249 4.249 8 H 0.069 0.931 9 C -0.046 4.046 10 N -0.931 5.931 11 Si 0.948 3.052 12 H -0.289 1.289 13 H -0.299 1.299 14 H -0.269 1.269 15 C 0.170 3.830 16 C 0.136 3.864 17 H 0.068 0.932 18 N -0.680 5.680 19 C 0.558 3.442 20 O -0.583 6.583 21 C -0.203 4.203 22 C 0.161 3.839 23 N -0.489 5.489 24 C 0.116 3.884 25 C -0.116 4.116 26 C -0.078 4.078 27 C -0.112 4.112 28 C -0.097 4.097 29 C -0.127 4.127 30 C 0.002 3.998 31 H 0.055 0.945 32 H 0.077 0.923 33 H 0.050 0.950 34 H 0.061 0.939 35 H 0.093 0.907 36 H 0.057 0.943 37 H 0.014 0.986 38 H 0.245 0.755 39 H 0.000 1.000 40 H 0.049 0.951 41 H 0.405 0.595 42 H 0.176 0.824 43 H 0.148 0.852 44 H 0.169 0.831 45 H 0.166 0.834 46 H 0.150 0.850 47 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.262 -10.447 0.285 21.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.106 4.106 3 H 0.097 0.903 4 C -0.156 4.156 5 C 0.010 3.990 6 N -0.323 5.323 7 C -0.379 4.379 8 H 0.087 0.913 9 C -0.242 4.242 10 N -0.578 5.578 11 Si 0.778 3.222 12 H -0.216 1.216 13 H -0.225 1.225 14 H -0.194 1.194 15 C 0.043 3.957 16 C 0.030 3.970 17 H 0.086 0.914 18 N -0.330 5.330 19 C 0.346 3.654 20 O -0.465 6.465 21 C -0.208 4.208 22 C -0.013 4.013 23 N -0.197 5.197 24 C -0.005 4.005 25 C -0.134 4.134 26 C -0.097 4.097 27 C -0.130 4.130 28 C -0.116 4.116 29 C -0.129 4.129 30 C -0.025 4.025 31 H 0.074 0.926 32 H 0.096 0.904 33 H 0.069 0.931 34 H 0.080 0.920 35 H 0.111 0.889 36 H 0.075 0.925 37 H 0.032 0.968 38 H 0.054 0.946 39 H 0.018 0.982 40 H 0.067 0.933 41 H 0.243 0.757 42 H 0.193 0.807 43 H 0.166 0.834 44 H 0.187 0.813 45 H 0.183 0.817 46 H 0.168 0.832 47 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -18.176 -10.521 0.247 21.003 hybrid contribution 1.522 0.031 -0.916 1.777 sum -16.654 -10.490 -0.669 19.694 Atomic orbital electron populations 1.21774 0.93053 1.02138 1.02372 1.21282 0.96853 0.99269 0.93206 0.90262 1.21985 0.95572 1.00472 0.97581 1.21153 0.93727 0.95987 0.88105 1.44163 1.48050 1.39396 1.00706 1.19382 1.09363 1.03552 1.05643 0.91345 1.25616 0.98733 0.99471 1.00388 1.70153 1.38654 1.30638 1.18316 0.85622 0.78297 0.81095 0.77230 1.21563 1.22506 1.19433 1.20892 0.89969 0.95169 0.89651 1.21557 0.95326 0.81133 0.98948 0.91426 1.45621 1.65466 1.13756 1.08154 1.18237 0.77229 0.85809 0.84168 1.90723 1.52938 1.70664 1.32187 1.20965 1.07893 0.95531 0.96443 1.23187 0.90639 0.90654 0.96782 1.67966 1.14419 1.06599 1.30672 1.19503 0.97111 0.95861 0.87991 1.21085 1.00267 0.90892 1.01198 1.21459 0.95663 1.01397 0.91204 1.21414 0.97338 0.94752 0.99451 1.21387 0.98089 0.95001 0.97119 1.19044 1.03321 0.94431 0.96093 1.22119 0.89270 0.92418 0.98675 0.92607 0.90436 0.93082 0.92039 0.88855 0.92485 0.96761 0.94599 0.98218 0.93290 0.75693 0.80711 0.83410 0.81345 0.81657 0.83197 0.83174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.98 9.05 71.98 0.65 -2.33 16 2 C -0.09 -2.49 2.47 -10.76 -0.03 -2.52 16 3 H 0.08 2.30 8.14 -2.38 -0.02 2.28 16 4 C -0.12 -3.26 5.21 30.68 0.16 -3.10 16 5 C 0.14 5.14 6.51 86.37 0.56 5.70 16 6 N -0.60 -29.09 2.91 -699.09 -2.04 -31.13 16 7 C -0.25 -13.59 9.59 84.03 0.81 -12.79 16 8 H 0.07 3.61 7.89 -2.91 -0.02 3.59 16 9 C -0.05 -2.69 4.91 84.86 0.42 -2.27 16 10 N -0.93 -57.66 11.19 21.65 0.24 -57.42 16 11 Si 0.95 47.25 29.59 68.60 2.03 49.28 16 12 H -0.29 -14.39 7.11 99.48 0.71 -13.68 16 13 H -0.30 -15.15 7.11 99.48 0.71 -14.45 16 14 H -0.27 -12.66 7.11 99.48 0.71 -11.96 16 15 C 0.17 8.41 4.91 86.37 0.42 8.83 16 16 C 0.14 5.16 2.24 45.07 0.10 5.26 16 17 H 0.07 2.70 7.58 -2.39 -0.02 2.68 16 18 N -0.68 -24.14 4.21 -445.10 -1.87 -26.01 16 19 C 0.56 22.04 7.74 86.76 0.67 22.71 16 20 O -0.58 -27.39 16.05 -3.93 -0.06 -27.45 16 21 C -0.20 -6.91 5.89 -20.00 -0.12 -7.03 16 22 C 0.16 4.88 10.68 85.43 0.91 5.79 16 23 N -0.49 -14.76 10.30 -187.68 -1.93 -16.69 16 24 C 0.12 3.21 6.61 40.27 0.27 3.47 16 25 C -0.12 -2.35 9.97 22.34 0.22 -2.13 16 26 C -0.08 -1.08 9.94 22.04 0.22 -0.87 16 27 C -0.11 -1.57 9.96 22.05 0.22 -1.35 16 28 C -0.10 -1.90 9.77 22.34 0.22 -1.68 16 29 C -0.13 -3.44 5.74 -21.29 -0.12 -3.56 16 30 C 0.00 0.06 9.46 23.01 0.22 0.28 16 31 H 0.05 1.18 7.54 -2.38 -0.02 1.16 16 32 H 0.08 1.34 8.14 -2.39 -0.02 1.33 16 33 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 34 H 0.06 1.64 6.41 -2.38 -0.02 1.63 16 35 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 36 H 0.06 2.11 7.93 -2.39 -0.02 2.09 16 37 H 0.01 0.56 8.14 -2.39 -0.02 0.54 16 38 H 0.24 15.00 8.31 -92.70 -0.77 14.23 16 39 H 0.00 -0.01 8.14 -2.39 -0.02 -0.03 16 40 H 0.05 2.91 6.04 -2.39 -0.01 2.90 16 41 H 0.40 12.34 4.67 -92.71 -0.43 11.91 16 42 H 0.18 4.44 6.37 -2.91 -0.02 4.42 16 43 H 0.15 2.55 8.06 -2.91 -0.02 2.53 16 44 H 0.17 1.06 8.06 -2.91 -0.02 1.04 16 45 H 0.17 1.12 8.06 -2.91 -0.02 1.09 16 46 H 0.15 2.31 8.06 -2.91 -0.02 2.28 16 47 H 0.15 4.57 7.70 -2.91 -0.02 4.55 16 Total: -1.00 -76.45 377.74 2.72 -73.73 By element: Atomic # 1 Polarization: 22.69 SS G_CDS: 0.56 Total: 23.25 kcal Atomic # 6 Polarization: 6.64 SS G_CDS: 5.80 Total: 12.44 kcal Atomic # 7 Polarization: -125.64 SS G_CDS: -5.60 Total: -131.25 kcal Atomic # 8 Polarization: -27.39 SS G_CDS: -0.06 Total: -27.45 kcal Atomic # 14 Polarization: 47.25 SS G_CDS: 2.03 Total: 49.28 kcal Total: -76.45 2.72 -73.73 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968361542.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.661 kcal (2) G-P(sol) polarization free energy of solvation -76.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.729 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds