Wall clock time and date at job start Tue Mar 31 2020 22:25:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09006 * 109.45143 * 2 1 4 4 C 1.53040 * 109.46389 * 240.02564 * 2 1 3 5 5 C 1.53191 * 109.31237 * 178.61542 * 4 2 1 6 6 N 1.46923 * 108.77640 * 54.63633 * 5 4 2 7 7 C 1.36940 * 120.62803 * 126.41285 * 6 5 4 8 8 H 1.08004 * 119.99892 * 207.67781 * 7 6 5 9 9 C 1.38814 * 120.00265 * 27.67696 * 7 6 5 10 10 N 1.31612 * 119.99931 * 17.35595 * 9 7 6 11 11 Si 1.86801 * 120.00047 * 197.35790 * 9 7 6 12 12 H 1.48500 * 109.47240 * 89.99774 * 11 9 7 13 13 H 1.48499 * 109.46893 * 210.00051 * 11 9 7 14 14 H 1.48505 * 109.47028 * 329.99867 * 11 9 7 15 15 C 1.46921 * 118.74080 * 306.39388 * 6 5 4 16 16 C 1.53051 * 109.45849 * 119.95987 * 2 1 3 17 17 H 1.08999 * 109.52075 * 61.41720 * 16 2 1 18 18 N 1.46503 * 109.49476 * 301.34042 * 16 2 1 19 19 C 1.34779 * 119.99372 * 155.16193 * 18 16 2 20 20 O 1.21541 * 120.00469 * 0.02562 * 19 18 16 21 21 C 1.47888 * 119.99437 * 179.97438 * 19 18 16 22 22 C 1.40577 * 119.70569 * 0.02562 * 21 19 18 23 23 C 1.35817 * 120.73390 * 179.97438 * 22 21 19 24 24 C 1.40550 * 119.98085 * 359.97438 * 23 22 21 25 25 C 1.40822 * 121.13446 * 179.97438 * 24 23 22 26 26 C 1.36551 * 118.20261 * 180.02562 * 25 24 23 27 27 C 1.39421 * 119.93728 * 359.97438 * 26 25 24 28 28 N 1.31020 * 121.71154 * 0.02996 * 27 26 25 29 29 C 1.33743 * 121.35238 * 359.95135 * 28 27 26 30 30 C 1.38404 * 119.70652 * 179.72370 * 21 19 18 31 31 H 1.09002 * 109.47224 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47581 * 299.97056 * 1 2 3 33 33 H 1.09007 * 109.46947 * 59.97353 * 1 2 3 34 34 H 1.09000 * 109.49643 * 58.66763 * 4 2 1 35 35 H 1.08992 * 109.49909 * 298.56644 * 4 2 1 36 36 H 1.09003 * 109.58867 * 174.42665 * 5 4 2 37 37 H 1.09004 * 109.58818 * 294.70737 * 5 4 2 38 38 H 0.97000 * 120.00190 * 179.97438 * 10 9 7 39 39 H 1.09001 * 109.59092 * 173.39395 * 15 6 5 40 40 H 1.09001 * 109.58660 * 293.81586 * 15 6 5 41 41 H 0.96995 * 120.00290 * 335.16114 * 18 16 2 42 42 H 1.07995 * 119.63216 * 359.97438 * 22 21 19 43 43 H 1.07994 * 120.00930 * 179.97438 * 23 22 21 44 44 H 1.07999 * 120.89729 * 0.04872 * 25 24 23 45 45 H 1.07993 * 120.02990 * 179.97438 * 26 25 24 46 46 H 1.08001 * 119.14523 * 180.02562 * 27 26 25 47 47 H 1.08003 * 120.23000 * 0.02562 * 30 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8930 1.0278 0.0000 4 6 2.0399 -0.7209 -1.2499 5 6 3.5714 -0.6887 -1.2640 6 7 4.0678 -1.2488 0.0003 7 6 4.9764 -2.2733 0.0004 8 1 5.0095 -2.9657 0.8287 9 6 5.8549 -2.4221 -1.0640 10 7 6.0607 -1.4203 -1.8924 11 14 6.7451 -4.0443 -1.3207 12 1 5.9282 -4.9243 -2.1945 13 1 8.0597 -3.7911 -1.9632 14 1 6.9548 -4.7068 -0.0083 15 6 3.5713 -0.6885 1.2645 16 6 2.0398 -0.7207 1.2503 17 1 1.6977 -1.7555 1.2391 18 7 1.5254 -0.0485 2.4460 19 6 1.4000 -0.7311 3.6013 20 8 1.7140 -1.9042 3.6513 21 6 0.8812 -0.0524 4.8085 22 6 0.5203 1.3047 4.7439 23 6 0.0412 1.9485 5.8396 24 6 -0.0988 1.2570 7.0552 25 6 -0.5925 1.9006 8.2063 26 6 -0.7035 1.1718 9.3557 27 6 -0.3326 -0.1721 9.3659 28 7 0.1265 -0.7681 8.2932 29 6 0.2595 -0.1117 7.1356 30 6 0.7495 -0.7607 5.9903 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3634 0.5134 0.8902 33 1 -0.3633 0.5143 -0.8898 34 1 1.6574 -0.2210 -2.1398 35 1 1.6979 -1.7557 -1.2381 36 1 3.9418 -1.2847 -2.0981 37 1 3.9143 0.3406 -1.3697 38 1 6.6748 -1.5242 -2.6360 39 1 3.9415 -1.2843 2.0987 40 1 3.9142 0.3410 1.3675 41 1 1.2751 0.8878 2.4062 42 1 0.6253 1.8413 3.8126 43 1 -0.2321 2.9914 5.7768 44 1 -0.8760 2.9424 8.1806 45 1 -1.0782 1.6360 10.2559 46 1 -0.4260 -0.7366 10.2819 47 1 1.0243 -1.8043 6.0323 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000968440506.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:25:25 Heat of formation + Delta-G solvation = 37.773990 kcal Electronic energy + Delta-G solvation = -28741.419682 eV Core-core repulsion = 24889.289913 eV Total energy + Delta-G solvation = -3852.129768 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -41.18519 -39.81233 -37.87987 -36.80754 -34.53530 -33.80087 -33.08448 -31.21762 -30.96538 -30.31121 -28.89214 -27.33204 -25.14021 -24.19439 -23.99821 -22.64185 -22.10316 -21.07469 -20.68309 -19.58572 -18.38976 -17.75756 -17.19134 -16.74300 -16.25073 -15.62816 -15.03030 -14.80001 -14.72459 -14.43011 -14.35606 -14.11942 -13.80160 -13.73688 -13.46777 -13.39113 -13.36669 -13.17410 -12.46911 -12.15428 -12.05417 -11.94638 -11.86278 -11.62704 -11.49947 -11.03168 -10.88809 -10.79438 -10.65348 -10.25912 -10.13856 -9.99714 -9.86276 -9.83207 -9.63813 -9.51360 -9.14307 -8.81615 -8.60029 -8.37751 -6.65953 -5.76266 -3.18204 -0.03307 0.32757 1.59037 2.26484 3.20940 3.27860 3.42480 3.48860 3.51815 3.85825 3.96879 4.20742 4.35387 4.49399 4.52573 4.59127 4.65858 4.82496 4.86601 5.10466 5.14926 5.28117 5.38870 5.43451 5.47253 5.53183 5.56606 5.61890 5.71842 5.88753 5.94285 5.96565 6.00557 6.06115 6.16607 6.17342 6.22452 6.29005 6.41906 6.55737 6.63425 6.67048 6.73826 6.84066 7.00550 7.36591 7.56381 7.66228 7.69594 7.85988 8.36870 8.48642 9.24482 9.86615 10.42000 11.32469 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.018117 B = 0.002472 C = 0.002271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1545.125147 B =11324.296376 C =12325.881607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.091 4.091 3 H 0.067 0.933 4 C -0.133 4.133 5 C 0.167 3.833 6 N -0.587 5.587 7 C -0.249 4.249 8 H 0.067 0.933 9 C 0.002 3.998 10 N -0.904 5.904 11 Si 0.903 3.097 12 H -0.287 1.287 13 H -0.292 1.292 14 H -0.278 1.278 15 C 0.142 3.858 16 C 0.132 3.868 17 H 0.088 0.912 18 N -0.713 5.713 19 C 0.552 3.448 20 O -0.526 6.526 21 C -0.110 4.110 22 C -0.089 4.089 23 C -0.102 4.102 24 C -0.089 4.089 25 C -0.061 4.061 26 C -0.170 4.170 27 C 0.128 3.872 28 N -0.465 5.465 29 C 0.117 3.883 30 C -0.025 4.025 31 H 0.052 0.948 32 H 0.046 0.954 33 H 0.052 0.948 34 H 0.054 0.946 35 H 0.057 0.943 36 H 0.090 0.910 37 H 0.019 0.981 38 H 0.253 0.747 39 H 0.059 0.941 40 H 0.017 0.983 41 H 0.393 0.607 42 H 0.132 0.868 43 H 0.136 0.864 44 H 0.140 0.860 45 H 0.139 0.861 46 H 0.161 0.839 47 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.288 11.470 17.074 26.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.110 4.110 3 H 0.085 0.915 4 C -0.173 4.173 5 C 0.041 3.959 6 N -0.310 5.310 7 C -0.379 4.379 8 H 0.085 0.915 9 C -0.196 4.196 10 N -0.549 5.549 11 Si 0.733 3.267 12 H -0.214 1.214 13 H -0.218 1.218 14 H -0.203 1.203 15 C 0.014 3.986 16 C 0.027 3.973 17 H 0.106 0.894 18 N -0.364 5.364 19 C 0.338 3.662 20 O -0.403 6.403 21 C -0.115 4.115 22 C -0.107 4.107 23 C -0.121 4.121 24 C -0.091 4.091 25 C -0.087 4.087 26 C -0.190 4.190 27 C -0.046 4.046 28 N -0.172 5.172 29 C -0.003 4.003 30 C -0.045 4.045 31 H 0.071 0.929 32 H 0.065 0.935 33 H 0.071 0.929 34 H 0.073 0.927 35 H 0.076 0.924 36 H 0.108 0.892 37 H 0.037 0.963 38 H 0.063 0.937 39 H 0.077 0.923 40 H 0.035 0.965 41 H 0.228 0.772 42 H 0.150 0.850 43 H 0.153 0.847 44 H 0.158 0.842 45 H 0.156 0.844 46 H 0.178 0.822 47 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -16.630 9.704 16.843 25.582 hybrid contribution 0.098 0.725 -0.156 0.748 sum -16.532 10.429 16.687 25.701 Atomic orbital electron populations 1.21860 0.95995 1.01649 1.00685 1.21312 0.94552 0.99661 0.95483 0.91469 1.22247 1.00677 0.99584 0.94801 1.20849 0.87311 0.97345 0.90404 1.43994 1.48070 1.39794 0.99095 1.19245 1.09640 1.02806 1.06198 0.91502 1.25016 0.97229 0.97522 0.99876 1.70036 1.37871 1.28978 1.18011 0.86269 0.78687 0.83686 0.78069 1.21411 1.21809 1.20345 1.21192 0.89997 0.96686 0.90754 1.21824 0.96794 0.97018 0.81647 0.89375 1.46041 1.65671 1.14234 1.10411 1.18126 0.78572 0.86551 0.82982 1.90824 1.49328 1.15723 1.84434 1.20057 1.02480 0.94337 0.94648 1.21004 0.97178 0.93372 0.99153 1.20856 0.99845 1.00001 0.91395 1.18957 1.00318 0.94575 0.95295 1.21512 0.95285 1.00209 0.91718 1.21963 1.01774 0.95911 0.99389 1.23027 0.92641 0.92337 0.96556 1.68045 1.12482 1.38073 0.98649 1.18785 0.98698 0.90227 0.92626 1.21283 0.93242 1.00927 0.89007 0.92864 0.93462 0.92927 0.92691 0.92375 0.89215 0.96324 0.93685 0.92287 0.96480 0.77178 0.84986 0.84658 0.84196 0.84363 0.82189 0.83059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.84 9.02 37.16 0.34 -1.50 16 2 C -0.09 -1.43 2.27 -90.58 -0.21 -1.63 16 3 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 4 C -0.13 -2.45 5.36 -26.61 -0.14 -2.60 16 5 C 0.17 3.91 5.31 -3.71 -0.02 3.89 16 6 N -0.59 -14.93 2.99 -172.32 -0.52 -15.44 16 7 C -0.25 -7.05 9.59 -15.06 -0.14 -7.20 16 8 H 0.07 1.92 7.89 -52.48 -0.41 1.50 16 9 C 0.00 0.05 4.91 -17.43 -0.09 -0.03 16 10 N -0.90 -26.37 11.19 55.49 0.62 -25.75 16 11 Si 0.90 22.28 29.59 -169.99 -5.03 17.25 16 12 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 13 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 14 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 15 C 0.14 3.09 6.09 -3.72 -0.02 3.07 16 16 C 0.13 2.35 2.06 -67.81 -0.14 2.21 16 17 H 0.09 1.81 7.58 -51.93 -0.39 1.42 16 18 N -0.71 -10.17 4.32 -54.62 -0.24 -10.40 16 19 C 0.55 8.73 7.73 -12.31 -0.10 8.63 16 20 O -0.53 -10.62 15.96 5.33 0.09 -10.53 16 21 C -0.11 -1.41 5.87 -105.00 -0.62 -2.02 16 22 C -0.09 -0.84 9.44 -39.57 -0.37 -1.21 16 23 C -0.10 -0.84 9.74 -39.58 -0.39 -1.22 16 24 C -0.09 -0.86 5.75 -106.73 -0.61 -1.48 16 25 C -0.06 -0.42 9.88 -39.21 -0.39 -0.81 16 26 C -0.17 -1.07 10.03 -39.75 -0.40 -1.47 16 27 C 0.13 1.05 11.15 -17.46 -0.19 0.85 16 28 N -0.46 -5.52 10.34 -10.98 -0.11 -5.63 16 29 C 0.12 1.43 6.60 -84.87 -0.56 0.87 16 30 C -0.02 -0.34 9.56 -38.68 -0.37 -0.70 16 31 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.05 0.52 7.35 -51.93 -0.38 0.14 16 33 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 36 H 0.09 2.37 6.04 -51.93 -0.31 2.06 16 37 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 39 H 0.06 1.40 7.93 -51.93 -0.41 0.98 16 40 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 41 H 0.39 4.27 6.28 -40.82 -0.26 4.02 16 42 H 0.13 0.91 6.34 -52.49 -0.33 0.58 16 43 H 0.14 0.68 8.06 -52.49 -0.42 0.26 16 44 H 0.14 0.54 8.06 -52.49 -0.42 0.12 16 45 H 0.14 0.42 8.06 -52.49 -0.42 0.00 16 46 H 0.16 0.80 8.06 -52.49 -0.42 0.38 16 47 H 0.15 2.20 7.60 -52.48 -0.40 1.80 16 LS Contribution 380.62 15.07 5.74 5.74 Total: -1.00 -34.16 380.62 -10.56 -44.72 By element: Atomic # 1 Polarization: 9.11 SS G_CDS: -6.69 Total: 2.42 kcal Atomic # 6 Polarization: 2.06 SS G_CDS: -4.42 Total: -2.36 kcal Atomic # 7 Polarization: -56.99 SS G_CDS: -0.24 Total: -57.23 kcal Atomic # 8 Polarization: -10.62 SS G_CDS: 0.09 Total: -10.53 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.03 Total: 17.25 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -34.16 -10.56 -44.72 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968440506.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.496 kcal (2) G-P(sol) polarization free energy of solvation -34.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.722 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds