Wall clock time and date at job start Tue Mar 31 2020 22:25:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08991 * 109.46670 * 2 1 4 4 C 1.53349 * 109.41565 * 240.09708 * 2 1 3 5 5 C 1.53194 * 109.14918 * 178.67647 * 4 2 1 6 6 N 1.46934 * 108.89214 * 54.57866 * 5 4 2 7 7 C 1.36935 * 120.62776 * 126.34278 * 6 5 4 8 8 H 1.08003 * 120.00334 * 331.82288 * 7 6 5 9 9 C 1.38816 * 120.00109 * 151.82327 * 7 6 5 10 10 N 1.31624 * 119.99356 * 343.07479 * 9 7 6 11 11 Si 1.86793 * 120.00395 * 163.07501 * 9 7 6 12 12 H 1.48500 * 109.47341 * 59.99642 * 11 9 7 13 13 H 1.48504 * 109.47235 * 180.02562 * 11 9 7 14 14 H 1.48504 * 109.46651 * 299.99824 * 11 9 7 15 15 C 1.46917 * 118.73910 * 306.32295 * 6 5 4 16 16 C 1.53042 * 109.45796 * 119.97381 * 2 1 3 17 17 H 1.08999 * 109.52559 * 301.34719 * 16 2 1 18 18 N 1.46498 * 109.50153 * 61.43341 * 16 2 1 19 19 C 1.34781 * 120.00195 * 204.83823 * 18 16 2 20 20 O 1.21545 * 119.99628 * 359.97438 * 19 18 16 21 21 C 1.47882 * 119.99778 * 179.97438 * 19 18 16 22 22 C 1.40573 * 119.70843 * 359.72635 * 21 19 18 23 23 C 1.35808 * 120.73399 * 179.73068 * 22 21 19 24 24 C 1.40551 * 119.98041 * 0.56081 * 23 22 21 25 25 C 1.40819 * 121.12699 * 179.71694 * 24 23 22 26 26 C 1.36561 * 118.20088 * 179.97438 * 25 24 23 27 27 C 1.39420 * 119.93274 * 0.02562 * 26 25 24 28 28 N 1.31016 * 121.71427 * 359.97438 * 27 26 25 29 29 C 1.33741 * 121.35384 * 0.04330 * 28 27 26 30 30 C 1.38408 * 119.70034 * 179.97438 * 21 19 18 31 31 H 1.09000 * 109.46817 * 300.02558 * 1 2 3 32 32 H 1.08991 * 109.47274 * 60.02564 * 1 2 3 33 33 H 1.08995 * 109.47589 * 180.02562 * 1 2 3 34 34 H 1.08996 * 109.68610 * 58.71674 * 4 2 1 35 35 H 1.09002 * 109.47692 * 298.51393 * 4 2 1 36 36 H 1.09003 * 109.58905 * 294.72177 * 5 4 2 37 37 H 1.09001 * 109.58865 * 174.43764 * 5 4 2 38 38 H 0.96997 * 119.99488 * 180.02562 * 10 9 7 39 39 H 1.09003 * 109.58812 * 173.39821 * 15 6 5 40 40 H 1.09007 * 109.58397 * 293.82038 * 15 6 5 41 41 H 0.97007 * 119.99694 * 24.83354 * 18 16 2 42 42 H 1.08005 * 119.63098 * 359.97438 * 22 21 19 43 43 H 1.07999 * 120.01051 * 180.23660 * 23 22 21 44 44 H 1.08001 * 120.90191 * 359.95949 * 25 24 23 45 45 H 1.08001 * 120.03416 * 180.02562 * 26 25 24 46 46 H 1.07999 * 119.13727 * 179.97438 * 27 26 25 47 47 H 1.08000 * 120.23663 * 0.02562 * 30 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0276 0.0000 4 6 2.0398 -0.7210 -1.2537 5 6 3.5713 -0.6886 -1.2643 6 7 4.0678 -1.2490 -0.0001 7 6 4.9763 -2.2735 -0.0002 8 1 5.0042 -2.9704 -0.8249 9 6 5.8614 -2.4166 1.0595 10 7 6.0659 -1.4128 1.8861 11 14 6.7622 -4.0332 1.3125 12 1 7.5860 -4.3338 0.1141 13 1 7.6415 -3.9287 2.5047 14 1 5.7747 -5.1228 1.5204 15 6 3.5714 -0.6889 1.2642 16 6 2.0398 -0.7209 1.2500 17 1 1.6572 -0.2215 2.1401 18 7 1.5801 -2.1118 1.2341 19 6 1.4546 -2.7934 2.3900 20 8 1.7234 -2.2542 3.4457 21 6 0.9900 -4.1973 2.3739 22 6 0.6754 -4.8130 1.1500 23 6 0.2521 -6.1028 1.1104 24 6 0.1133 -6.8333 2.3031 25 6 -0.3294 -8.1700 2.2907 26 6 -0.4421 -8.8236 3.4845 27 6 -0.1227 -8.1650 4.6711 28 7 0.2889 -6.9212 4.6792 29 6 0.4207 -6.2244 3.5452 30 6 0.8639 -4.8916 3.5646 31 1 -0.3633 0.5142 0.8898 32 1 -0.3633 0.5134 -0.8901 33 1 -0.3634 -1.0276 0.0005 34 1 1.6592 -0.2217 -2.1447 35 1 1.6979 -1.7560 -1.2421 36 1 3.9143 0.3410 -1.3673 37 1 3.9437 -1.2829 -2.0987 38 1 6.6846 -1.5126 2.6264 39 1 3.9417 -1.2849 2.0983 40 1 3.9143 0.3407 1.3673 41 1 1.3659 -2.5422 0.3915 42 1 0.7752 -4.2552 0.2304 43 1 0.0172 -6.5654 0.1632 44 1 -0.5733 -8.6649 1.3623 45 1 -0.7785 -9.8496 3.5094 46 1 -0.2169 -8.6940 5.6079 47 1 1.1030 -4.4116 4.5020 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000968440507.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:25:29 Heat of formation + Delta-G solvation = 39.874067 kcal Electronic energy + Delta-G solvation = -29891.955139 eV Core-core repulsion = 26039.916437 eV Total energy + Delta-G solvation = -3852.038702 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -40.95015 -39.63708 -37.79861 -36.54590 -34.15907 -33.58587 -32.88647 -31.11020 -30.79453 -30.06700 -29.04508 -27.33031 -24.96174 -24.01921 -23.91784 -22.44878 -21.99984 -21.11051 -20.89432 -18.76562 -18.45646 -17.53753 -16.95810 -16.64487 -16.10006 -15.18835 -14.96255 -14.61174 -14.55635 -14.28983 -14.12569 -13.83303 -13.79802 -13.69380 -13.50782 -13.27567 -13.18930 -12.97417 -12.58949 -11.99025 -11.87185 -11.74147 -11.65813 -11.56990 -11.36081 -11.09080 -10.90278 -10.70331 -10.66528 -10.52187 -10.23528 -9.92598 -9.71937 -9.64570 -9.52230 -9.39810 -8.89689 -8.44241 -8.42524 -8.29574 -6.63387 -5.75290 -3.18591 0.20327 0.56940 1.82308 2.53030 3.39605 3.46877 3.47805 3.50612 3.64797 4.13162 4.20133 4.42717 4.51919 4.56802 4.69641 4.82717 4.93145 5.08439 5.09638 5.20821 5.23033 5.33814 5.36588 5.43621 5.55764 5.65461 5.76212 5.78980 5.86303 5.91612 5.94444 6.00627 6.13624 6.19864 6.27125 6.28489 6.35455 6.39039 6.43423 6.53608 6.64503 6.67090 6.73927 6.87777 6.98748 7.37509 7.68512 7.77082 7.81954 8.06811 8.48452 8.74151 9.23207 9.87312 10.42925 11.32617 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010520 B = 0.004154 C = 0.003441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2661.003702 B = 6738.858747 C = 8135.111822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.094 4.094 3 H 0.078 0.922 4 C -0.129 4.129 5 C 0.142 3.858 6 N -0.587 5.587 7 C -0.256 4.256 8 H 0.063 0.937 9 C 0.010 3.990 10 N -0.897 5.897 11 Si 0.895 3.105 12 H -0.283 1.283 13 H -0.290 1.290 14 H -0.284 1.284 15 C 0.160 3.840 16 C 0.125 3.875 17 H 0.078 0.922 18 N -0.690 5.690 19 C 0.554 3.446 20 O -0.538 6.538 21 C -0.102 4.102 22 C -0.083 4.083 23 C -0.105 4.105 24 C -0.090 4.090 25 C -0.061 4.061 26 C -0.174 4.174 27 C 0.125 3.875 28 N -0.465 5.465 29 C 0.118 3.882 30 C -0.029 4.029 31 H 0.050 0.950 32 H 0.050 0.950 33 H 0.050 0.950 34 H 0.054 0.946 35 H 0.052 0.948 36 H 0.018 0.982 37 H 0.053 0.947 38 H 0.255 0.745 39 H 0.097 0.903 40 H 0.026 0.974 41 H 0.394 0.606 42 H 0.132 0.868 43 H 0.135 0.865 44 H 0.139 0.861 45 H 0.137 0.863 46 H 0.159 0.841 47 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.592 -9.495 -2.994 19.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.113 4.113 3 H 0.097 0.903 4 C -0.168 4.168 5 C 0.015 3.985 6 N -0.309 5.309 7 C -0.386 4.386 8 H 0.080 0.920 9 C -0.190 4.190 10 N -0.540 5.540 11 Si 0.725 3.275 12 H -0.209 1.209 13 H -0.216 1.216 14 H -0.211 1.211 15 C 0.033 3.967 16 C 0.020 3.980 17 H 0.096 0.904 18 N -0.340 5.340 19 C 0.340 3.660 20 O -0.416 6.416 21 C -0.107 4.107 22 C -0.101 4.101 23 C -0.123 4.123 24 C -0.092 4.092 25 C -0.087 4.087 26 C -0.194 4.194 27 C -0.049 4.049 28 N -0.173 5.173 29 C -0.003 4.003 30 C -0.049 4.049 31 H 0.070 0.930 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.073 0.927 35 H 0.071 0.929 36 H 0.036 0.964 37 H 0.071 0.929 38 H 0.065 0.935 39 H 0.115 0.885 40 H 0.044 0.956 41 H 0.230 0.770 42 H 0.149 0.851 43 H 0.152 0.848 44 H 0.157 0.843 45 H 0.155 0.845 46 H 0.176 0.824 47 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -16.004 -8.526 -1.370 18.185 hybrid contribution 0.334 -1.583 -1.079 1.944 sum -15.670 -10.109 -2.449 18.808 Atomic orbital electron populations 1.21851 0.95991 1.01334 1.01022 1.21372 0.94583 0.99953 0.95414 0.90319 1.22138 0.99306 0.99277 0.96099 1.20931 0.90656 0.96577 0.90304 1.43959 1.48265 1.39589 0.99110 1.19013 1.09876 1.03045 1.06630 0.91967 1.24993 0.97099 0.97070 0.99828 1.69981 1.37155 1.28934 1.17935 0.86484 0.79438 0.84206 0.77339 1.20939 1.21564 1.21098 1.21208 0.86586 0.97843 0.91021 1.21840 0.99033 0.80153 0.97008 0.90439 1.45734 1.66250 1.14081 1.07950 1.17999 0.78234 0.85256 0.84497 1.90763 1.50581 1.69498 1.30756 1.20099 1.01723 0.95283 0.93635 1.21016 0.96653 0.95203 0.97254 1.20831 1.00326 0.94229 0.96962 1.18936 1.00596 0.95062 0.94578 1.21492 0.95303 0.92857 0.99015 1.21923 1.02247 1.01636 0.93557 1.22978 0.93196 0.90415 0.98279 1.68020 1.12044 1.08094 1.29132 1.18769 0.98849 0.94393 0.88253 1.21250 0.93605 0.91042 0.98994 0.93039 0.93120 0.93108 0.92686 0.92900 0.96421 0.92852 0.93507 0.88472 0.95602 0.76983 0.85061 0.84763 0.84308 0.84523 0.82359 0.83193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.80 9.05 37.16 0.34 -1.47 16 2 C -0.09 -1.43 2.48 -90.42 -0.22 -1.66 16 3 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 4 C -0.13 -1.96 5.23 -26.45 -0.14 -2.10 16 5 C 0.14 2.76 6.50 -3.71 -0.02 2.74 16 6 N -0.59 -14.02 2.91 -172.31 -0.50 -14.52 16 7 C -0.26 -6.88 9.58 -15.06 -0.14 -7.03 16 8 H 0.06 1.64 7.89 -52.48 -0.41 1.23 16 9 C 0.01 0.27 4.92 -17.43 -0.09 0.18 16 10 N -0.90 -26.60 11.20 55.49 0.62 -25.98 16 11 Si 0.90 22.41 29.59 -169.99 -5.03 17.38 16 12 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 13 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 14 H -0.28 -7.15 7.11 56.52 0.40 -6.75 16 15 C 0.16 3.81 4.90 -3.71 -0.02 3.79 16 16 C 0.13 2.35 2.24 -67.81 -0.15 2.20 16 17 H 0.08 1.51 7.58 -51.93 -0.39 1.12 16 18 N -0.69 -12.22 4.20 -54.62 -0.23 -12.45 16 19 C 0.55 10.77 7.73 -12.31 -0.10 10.68 16 20 O -0.54 -12.35 15.96 5.33 0.09 -12.26 16 21 C -0.10 -1.71 5.87 -105.01 -0.62 -2.32 16 22 C -0.08 -1.11 9.44 -39.57 -0.37 -1.49 16 23 C -0.10 -1.22 9.74 -39.58 -0.39 -1.60 16 24 C -0.09 -1.14 5.75 -106.73 -0.61 -1.75 16 25 C -0.06 -0.58 9.88 -39.21 -0.39 -0.97 16 26 C -0.17 -1.50 10.03 -39.75 -0.40 -1.89 16 27 C 0.12 1.31 11.15 -17.46 -0.19 1.12 16 28 N -0.47 -6.73 10.34 -10.98 -0.11 -6.84 16 29 C 0.12 1.79 6.60 -84.87 -0.56 1.23 16 30 C -0.03 -0.49 9.56 -38.68 -0.37 -0.86 16 31 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.05 0.61 7.54 -51.93 -0.39 0.22 16 34 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.05 0.78 6.41 -51.93 -0.33 0.45 16 36 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 37 H 0.05 1.02 7.93 -51.93 -0.41 0.61 16 38 H 0.25 7.45 8.31 -40.82 -0.34 7.11 16 39 H 0.10 2.75 6.06 -51.93 -0.31 2.44 16 40 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.39 6.14 4.62 -40.82 -0.19 5.95 16 42 H 0.13 1.51 6.34 -52.48 -0.33 1.18 16 43 H 0.13 1.11 8.06 -52.49 -0.42 0.69 16 44 H 0.14 0.88 8.06 -52.49 -0.42 0.46 16 45 H 0.14 0.71 8.06 -52.49 -0.42 0.28 16 46 H 0.16 1.13 8.06 -52.49 -0.42 0.71 16 47 H 0.15 2.65 7.60 -52.49 -0.40 2.25 16 LS Contribution 377.53 15.07 5.69 5.69 Total: -1.00 -33.68 377.53 -10.47 -44.14 By element: Atomic # 1 Polarization: 12.59 SS G_CDS: -6.54 Total: 6.04 kcal Atomic # 6 Polarization: 3.25 SS G_CDS: -4.44 Total: -1.19 kcal Atomic # 7 Polarization: -59.58 SS G_CDS: -0.22 Total: -59.80 kcal Atomic # 8 Polarization: -12.35 SS G_CDS: 0.09 Total: -12.26 kcal Atomic # 14 Polarization: 22.41 SS G_CDS: -5.03 Total: 17.38 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -33.68 -10.47 -44.14 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968440507.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.018 kcal (2) G-P(sol) polarization free energy of solvation -33.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.144 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds